Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS38365

Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
1,990,906	-				-0.5
1,990,927	+				+0.5
1,991,020	+				+0.5
1,991,020	+				-0.1
1,991,021	-				-0.6
1,991,021	-				-2.5
1,991,033	+				-0.5
1,991,033	+				+0.8
1,991,033	+				-1.1
1,991,033	+				+1.0
1,991,033	+				+0.3
1,991,033	+				+0.1
1,991,033	+				-0.7
1,991,034	-				-0.5
1,991,034	-				-0.0
1,991,034	-				-1.3
1,991,034	-				-0.5
1,991,034	-				-0.5
1,991,034	-				-0.1
1,991,034	-				+0.5
1,991,192	+		QEN71_RS38360	0.23	-0.2
1,991,192	+		QEN71_RS38360	0.23	+0.2
1,991,192	+		QEN71_RS38360	0.23	-0.7
1,991,192	+		QEN71_RS38360	0.23	-0.5
1,991,192	+		QEN71_RS38360	0.23	-0.3
1,991,193	-		QEN71_RS38360	0.23	-1.0
1,991,193	-		QEN71_RS38360	0.23	+0.4
1,991,193	-		QEN71_RS38360	0.23	+0.5
1,991,193	-		QEN71_RS38360	0.23	-0.3
1,991,195	+		QEN71_RS38360	0.23	-1.8
1,991,195	+		QEN71_RS38360	0.23	-0.9
1,991,195	+		QEN71_RS38360	0.23	-1.5
1,991,195	+		QEN71_RS38360	0.23	-0.2
1,991,196	-		QEN71_RS38360	0.23	-1.2
1,991,196	-		QEN71_RS38360	0.23	-0.8
1,991,196	-		QEN71_RS38360	0.23	-0.4
1,991,196	-		QEN71_RS38360	0.23	-1.3
1,991,196	-		QEN71_RS38360	0.23	-3.0
1,991,196	-		QEN71_RS38360	0.23	-1.3
1,991,196	-		QEN71_RS38360	0.23	-0.8
1,991,539	+		QEN71_RS38360	0.72	-0.2
1,991,539	+		QEN71_RS38360	0.72	+0.4
1,991,540	-		QEN71_RS38360	0.72	+0.3
1,991,540	-		QEN71_RS38360	0.72	-1.2
1,991,540	-		QEN71_RS38360	0.72	+0.4
1,991,540	-		QEN71_RS38360	0.72	-0.3
1,991,540	-		QEN71_RS38360	0.72	-0.7
1,991,540	-		QEN71_RS38360	0.72	-1.3
1,991,540	-		QEN71_RS38360	0.72	+0.6
1,991,706	-				-0.2
1,991,706	-				+0.2
1,991,737	+				-0.4
1,991,737	+				-2.3
1,991,737	+				-0.8
1,991,737	+				-1.1
1,991,737	+				-1.4
1,991,737	+				-0.9
1,991,737	+				-0.9
1,991,737	+				-1.0
1,991,737	+				-1.8
1,991,737	+				-0.4
1,991,737	+				+0.7
1,991,737	+				+0.0
1,991,737	+				-0.8
1,991,737	+				-2.1
1,991,737	+				-0.2
1,991,737	+				-1.2
1,991,737	+				-0.3
1,991,738	-				-1.0
1,991,738	-				+0.8
1,991,738	-				-1.2
1,991,738	-				+0.0
1,991,738	-				-0.7
1,991,738	-				-1.2
1,991,738	-				+0.6
1,991,738	-				+0.1
1,991,738	-				-0.0
1,991,738	-				+0.5
1,991,738	-				-1.5
1,991,738	-				-1.0
1,991,743	+				+0.6
1,991,743	+				-1.5
1,991,743	+				-0.8
1,991,743	+				+0.4
1,991,743	+				-0.2
1,991,743	+				-1.1
1,991,743	+				-0.6
1,991,743	+				-1.7
1,991,743	+				+0.2
1,991,743	+				+0.3
1,991,743	+				-0.9
1,991,743	+				-2.9
1,991,743	+				-1.5
1,991,743	+				-0.4
1,991,744	-				+0.6
1,991,744	-				+0.9
1,991,744	-				-0.7
1,991,744	-				-1.9
1,991,744	-				+0.9
1,991,744	-				-1.4
1,991,744	-				-0.5
1,991,744	-				+0.1
1,991,744	-				-0.5
1,991,744	-				+0.5
1,991,744	-				+0.8
1,991,744	-				-0.4
1,991,765	-				-2.5
1,991,778	+				+1.4
1,991,779	-				-0.7
1,991,779	-				-1.0
1,991,883	+				-0.0
1,991,883	+				+0.5
1,991,883	+				+0.2
1,991,883	+				+1.2
1,991,883	+				+0.7
1,991,893	+				+0.4
1,991,893	+				-1.0
1,991,893	+				+0.3
1,991,893	+				+0.5
1,991,893	+				+0.9
1,991,893	+				-0.5
1,991,894	-				-0.5
1,991,894	-				+1.3
1,991,894	-				+0.1
1,991,894	-				-0.4
1,992,009	-		QEN71_RS38365	0.13	+0.5
1,992,009	-		QEN71_RS38365	0.13	+0.1
1,992,054	+		QEN71_RS38365	0.16	-1.2
1,992,054	+		QEN71_RS38365	0.16	-1.0
1,992,055	-		QEN71_RS38365	0.16	-0.2
1,992,055	-		QEN71_RS38365	0.16	-0.5
1,992,055	-		QEN71_RS38365	0.16	-3.8
1,992,065	+		QEN71_RS38365	0.17	-0.5
1,992,065	+		QEN71_RS38365	0.17	-1.5
1,992,066	-		QEN71_RS38365	0.17	-0.2
1,992,149	+		QEN71_RS38365	0.23	-0.5
1,992,149	+		QEN71_RS38365	0.23	-0.2
1,992,150	-		QEN71_RS38365	0.23	-1.2
1,992,150	-		QEN71_RS38365	0.23	-0.6
1,992,167	+		QEN71_RS38365	0.24	-2.1
1,992,167	+		QEN71_RS38365	0.24	+0.5
1,992,167	+		QEN71_RS38365	0.24	-1.0
1,992,167	+		QEN71_RS38365	0.24	-1.4
1,992,167	+		QEN71_RS38365	0.24	+0.1
1,992,167	+		QEN71_RS38365	0.24	-1.3
1,992,167	+		QEN71_RS38365	0.24	-0.6
1,992,167	+		QEN71_RS38365	0.24	-0.5
1,992,167	+		QEN71_RS38365	0.24	-1.7
1,992,167	+		QEN71_RS38365	0.24	+0.8
1,992,167	+		QEN71_RS38365	0.24	-0.1
1,992,167	+		QEN71_RS38365	0.24	+0.2
1,992,167	+		QEN71_RS38365	0.24	-2.0
1,992,168	-		QEN71_RS38365	0.24	+0.1
1,992,168	-		QEN71_RS38365	0.24	-1.0
1,992,168	-		QEN71_RS38365	0.24	+0.3
1,992,168	-		QEN71_RS38365	0.24	-1.1
1,992,168	-		QEN71_RS38365	0.24	-0.2
1,992,168	-		QEN71_RS38365	0.24	+0.1
1,992,168	-		QEN71_RS38365	0.24	-0.1
1,992,168	-		QEN71_RS38365	0.24	+0.0
1,992,168	-		QEN71_RS38365	0.24	-0.4
1,992,168	-		QEN71_RS38365	0.24	+0.1
1,992,168	-		QEN71_RS38365	0.24	-0.0
1,992,265	-		QEN71_RS38365	0.32	+1.5
1,992,265	-		QEN71_RS38365	0.32	-1.1
1,992,265	-		QEN71_RS38365	0.32	+0.1
1,992,365	+		QEN71_RS38365	0.39	+1.8
1,992,365	+		QEN71_RS38365	0.39	+2.3
1,992,366	-		QEN71_RS38365	0.39	-0.8
1,992,366	-		QEN71_RS38365	0.39	-2.2
1,992,527	+		QEN71_RS38365	0.51	+0.1
1,992,527	+		QEN71_RS38365	0.51	+0.0
1,992,527	+		QEN71_RS38365	0.51	-0.4
1,992,624	+		QEN71_RS38365	0.58	+0.8
1,992,624	+		QEN71_RS38365	0.58	+0.3
1,992,624	+		QEN71_RS38365	0.58	-0.8
1,992,624	+		QEN71_RS38365	0.58	+0.3
1,992,624	+		QEN71_RS38365	0.58	-0.4
1,992,625	-		QEN71_RS38365	0.58	-0.5
1,992,625	-		QEN71_RS38365	0.58	-1.7
1,992,625	-		QEN71_RS38365	0.58	-0.2
1,992,625	-		QEN71_RS38365	0.58	-2.8
1,992,625	-		QEN71_RS38365	0.58	-0.9
1,992,625	-		QEN71_RS38365	0.58	-1.4
1,992,625	-		QEN71_RS38365	0.58	+0.2
1,992,810	+		QEN71_RS38365	0.72	+0.0
1,992,810	+		QEN71_RS38365	0.72	-1.0
1,992,811	-		QEN71_RS38365	0.72	-3.0
1,992,811	-		QEN71_RS38365	0.72	+1.5
1,992,987	-		QEN71_RS38365	0.85	-0.1
1,992,987	-		QEN71_RS38365	0.85	-0.5
1,992,987	-		QEN71_RS38365	0.85	-0.8
1,992,987	-		QEN71_RS38365	0.85	-0.6
1,992,987	-		QEN71_RS38365	0.85	-0.4
1,993,088	+				-0.5
1,993,089	-				+0.4
1,993,089	-				-0.1
1,993,170	+				+0.6
1,993,171	-				-0.1
1,993,289	+		QEN71_RS38370	0.37	-2.5
1,993,289	+		QEN71_RS38370	0.37	-1.3
1,993,289	+		QEN71_RS38370	0.37	-1.0
1,993,289	+		QEN71_RS38370	0.37	-1.0
1,993,289	+		QEN71_RS38370	0.37	-0.5
1,993,289	+		QEN71_RS38370	0.37	+0.2
1,993,290	-		QEN71_RS38370	0.38	-0.5
1,993,322	+		QEN71_RS38370	0.50	-2.8
1,993,322	+		QEN71_RS38370	0.50	-2.8
1,993,322	+		QEN71_RS38370	0.50	-3.3
1,993,461	-				+0.1
1,993,501	+				-0.6
1,993,501	+				-0.5
1,993,512	+				-0.5
1,993,547	+				-0.2