Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS32605 and QEN71_RS32610 are separated by 62 nucleotides QEN71_RS32610 and QEN71_RS32615 are separated by 137 nucleotides QEN71_RS32615 and QEN71_RS32620 are separated by 12 nucleotides
QEN71_RS32605: QEN71_RS32605 - TIGR00366 family protein, at 650,589 to 651,911
_RS32605
QEN71_RS32610: QEN71_RS32610 - histone deacetylase family protein, at 651,974 to 653,008
_RS32610
QEN71_RS32615: QEN71_RS32615 - hypothetical protein, at 653,146 to 653,430
_RS32615
QEN71_RS32620: QEN71_RS32620 - CDP-alcohol phosphatidyltransferase family protein, at 653,443 to 654,051
_RS32620
Position (kb) 651
652
653
654 Strain fitness (log2 ratio) -2
-1
0
1 at 651.019 kb on - strand, within QEN71_RS32605 at 651.019 kb on - strand, within QEN71_RS32605 at 651.227 kb on - strand, within QEN71_RS32605 at 651.357 kb on + strand, within QEN71_RS32605 at 651.462 kb on + strand, within QEN71_RS32605 at 651.462 kb on + strand, within QEN71_RS32605 at 651.463 kb on - strand, within QEN71_RS32605 at 651.900 kb on + strand at 651.901 kb on - strand at 651.901 kb on - strand at 651.948 kb on - strand at 651.948 kb on - strand at 651.948 kb on - strand at 651.951 kb on + strand at 651.965 kb on + strand at 651.966 kb on - strand at 651.986 kb on + strand at 651.986 kb on + strand at 651.986 kb on + strand at 651.987 kb on - strand at 651.988 kb on + strand at 651.988 kb on + strand at 651.989 kb on - strand at 651.989 kb on - strand at 652.131 kb on - strand, within QEN71_RS32610 at 652.145 kb on + strand, within QEN71_RS32610 at 652.146 kb on - strand, within QEN71_RS32610 at 652.146 kb on - strand, within QEN71_RS32610 at 652.382 kb on - strand, within QEN71_RS32610 at 652.463 kb on + strand, within QEN71_RS32610 at 652.464 kb on - strand, within QEN71_RS32610 at 652.476 kb on - strand, within QEN71_RS32610 at 652.482 kb on - strand, within QEN71_RS32610 at 652.482 kb on - strand, within QEN71_RS32610 at 652.624 kb on - strand, within QEN71_RS32610 at 652.641 kb on + strand, within QEN71_RS32610 at 652.825 kb on + strand, within QEN71_RS32610 at 652.940 kb on + strand at 652.940 kb on + strand at 652.940 kb on + strand at 652.940 kb on + strand at 652.941 kb on - strand at 652.942 kb on + strand at 652.943 kb on - strand at 652.977 kb on + strand at 652.978 kb on - strand at 652.978 kb on - strand at 652.978 kb on - strand at 652.978 kb on - strand at 652.978 kb on - strand at 652.979 kb on - strand at 653.026 kb on + strand at 653.281 kb on - strand, within QEN71_RS32615 at 653.355 kb on - strand, within QEN71_RS32615 at 653.355 kb on - strand, within QEN71_RS32615 at 653.416 kb on + strand at 653.416 kb on + strand at 653.416 kb on + strand at 653.416 kb on + strand at 653.416 kb on + strand at 653.417 kb on - strand at 653.417 kb on - strand at 653.417 kb on - strand at 653.417 kb on - strand at 653.436 kb on + strand at 653.496 kb on - strand at 653.519 kb on - strand, within QEN71_RS32620 at 653.519 kb on - strand, within QEN71_RS32620 at 653.519 kb on - strand, within QEN71_RS32620 at 653.519 kb on - strand, within QEN71_RS32620 at 653.519 kb on - strand, within QEN71_RS32620 at 653.519 kb on - strand, within QEN71_RS32620 at 653.522 kb on + strand, within QEN71_RS32620 at 653.551 kb on + strand, within QEN71_RS32620 at 653.629 kb on - strand, within QEN71_RS32620 at 653.685 kb on + strand, within QEN71_RS32620 at 653.745 kb on - strand, within QEN71_RS32620 at 653.746 kb on + strand, within QEN71_RS32620 at 653.951 kb on + strand, within QEN71_RS32620 at 653.951 kb on + strand, within QEN71_RS32620 at 653.952 kb on - strand, within QEN71_RS32620 at 653.952 kb on - strand, within QEN71_RS32620 at 653.952 kb on - strand, within QEN71_RS32620
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 651,019 - QEN71_RS32605 0.33 +0.4 651,019 - QEN71_RS32605 0.33 -0.1 651,227 - QEN71_RS32605 0.48 -0.8 651,357 + QEN71_RS32605 0.58 -0.8 651,462 + QEN71_RS32605 0.66 -2.7 651,462 + QEN71_RS32605 0.66 -0.5 651,463 - QEN71_RS32605 0.66 +0.2 651,900 + -0.5 651,901 - +0.8 651,901 - +0.1 651,948 - -1.0 651,948 - -0.3 651,948 - +0.2 651,951 + -0.8 651,965 + -1.3 651,966 - -1.3 651,986 + -2.1 651,986 + -0.6 651,986 + +0.2 651,987 - -0.5 651,988 + +0.9 651,988 + -0.0 651,989 - -0.8 651,989 - -1.3 652,131 - QEN71_RS32610 0.15 +0.3 652,145 + QEN71_RS32610 0.17 +0.0 652,146 - QEN71_RS32610 0.17 -0.2 652,146 - QEN71_RS32610 0.17 +0.8 652,382 - QEN71_RS32610 0.39 -0.6 652,463 + QEN71_RS32610 0.47 -1.3 652,464 - QEN71_RS32610 0.47 -0.9 652,476 - QEN71_RS32610 0.49 -0.8 652,482 - QEN71_RS32610 0.49 -0.1 652,482 - QEN71_RS32610 0.49 +0.8 652,624 - QEN71_RS32610 0.63 +0.4 652,641 + QEN71_RS32610 0.64 +1.3 652,825 + QEN71_RS32610 0.82 -0.8 652,940 + -0.7 652,940 + +0.4 652,940 + +1.4 652,940 + -2.0 652,941 - -0.2 652,942 + +0.4 652,943 - +0.5 652,977 + -1.1 652,978 - +0.5 652,978 - -0.1 652,978 - +0.4 652,978 - -0.9 652,978 - -1.6 652,979 - -0.7 653,026 + +0.1 653,281 - QEN71_RS32615 0.47 -0.2 653,355 - QEN71_RS32615 0.73 +0.0 653,355 - QEN71_RS32615 0.73 +0.3 653,416 + +0.4 653,416 + +1.2 653,416 + +1.0 653,416 + -1.4 653,416 + -1.2 653,417 - -0.8 653,417 - -1.1 653,417 - -0.8 653,417 - -0.5 653,436 + -0.5 653,496 - +0.1 653,519 - QEN71_RS32620 0.12 -0.8 653,519 - QEN71_RS32620 0.12 +0.3 653,519 - QEN71_RS32620 0.12 -0.1 653,519 - QEN71_RS32620 0.12 -1.3 653,519 - QEN71_RS32620 0.12 +1.3 653,519 - QEN71_RS32620 0.12 -0.5 653,522 + QEN71_RS32620 0.13 -0.3 653,551 + QEN71_RS32620 0.18 +1.1 653,629 - QEN71_RS32620 0.31 -0.1 653,685 + QEN71_RS32620 0.40 -1.3 653,745 - QEN71_RS32620 0.50 -0.6 653,746 + QEN71_RS32620 0.50 +0.8 653,951 + QEN71_RS32620 0.83 -0.7 653,951 + QEN71_RS32620 0.83 +0.6 653,952 - QEN71_RS32620 0.84 +0.5 653,952 - QEN71_RS32620 0.84 -0.1 653,952 - QEN71_RS32620 0.84 -0.5
Or see this region's nucleotide sequence