Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS31485 and QEN71_RS31490 are separated by 5 nucleotides QEN71_RS31490 and QEN71_RS31495 overlap by 1 nucleotides QEN71_RS31495 and QEN71_RS31500 are separated by 51 nucleotides
QEN71_RS31485: QEN71_RS31485 - ABC transporter substrate-binding protein, at 413,968 to 415,467
_RS31485
QEN71_RS31490: QEN71_RS31490 - ABC transporter permease, at 415,473 to 416,417
_RS31490
QEN71_RS31495: QEN71_RS31495 - ABC transporter permease, at 416,417 to 417,301
_RS31495
QEN71_RS31500: QEN71_RS31500 - gamma-glutamyltransferase family protein, at 417,353 to 418,990
_RS31500
Position (kb) 416
417
418 Strain fitness (log2 ratio) -2
-1
0
1
2 at 415.636 kb on - strand, within QEN71_RS31490 at 415.666 kb on - strand, within QEN71_RS31490 at 415.972 kb on - strand, within QEN71_RS31490 at 415.972 kb on - strand, within QEN71_RS31490 at 416.106 kb on + strand, within QEN71_RS31490 at 416.382 kb on + strand at 416.382 kb on + strand at 416.382 kb on + strand at 416.382 kb on + strand at 416.382 kb on + strand at 416.382 kb on + strand at 416.382 kb on + strand at 416.383 kb on - strand at 416.383 kb on - strand at 416.383 kb on - strand at 416.383 kb on - strand at 416.383 kb on - strand at 416.383 kb on - strand at 416.383 kb on - strand at 416.383 kb on - strand at 416.383 kb on - strand at 416.384 kb on + strand at 416.385 kb on - strand at 416.423 kb on - strand at 416.423 kb on - strand at 416.429 kb on - strand at 416.429 kb on - strand at 416.975 kb on + strand, within QEN71_RS31495 at 416.975 kb on + strand, within QEN71_RS31495 at 416.975 kb on + strand, within QEN71_RS31495 at 416.975 kb on + strand, within QEN71_RS31495 at 416.976 kb on - strand, within QEN71_RS31495 at 416.976 kb on - strand, within QEN71_RS31495 at 417.029 kb on + strand, within QEN71_RS31495 at 417.517 kb on + strand, within QEN71_RS31500 at 417.518 kb on - strand, within QEN71_RS31500 at 417.995 kb on + strand, within QEN71_RS31500 at 417.995 kb on + strand, within QEN71_RS31500 at 417.995 kb on + strand, within QEN71_RS31500 at 417.996 kb on - strand, within QEN71_RS31500 at 418.076 kb on + strand, within QEN71_RS31500 at 418.076 kb on + strand, within QEN71_RS31500 at 418.077 kb on - strand, within QEN71_RS31500 at 418.112 kb on + strand, within QEN71_RS31500 at 418.122 kb on - strand, within QEN71_RS31500 at 418.277 kb on + strand, within QEN71_RS31500 at 418.278 kb on - strand, within QEN71_RS31500 at 418.278 kb on - strand, within QEN71_RS31500 at 418.283 kb on + strand, within QEN71_RS31500 at 418.283 kb on + strand, within QEN71_RS31500
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 415,636 - QEN71_RS31490 0.17 +0.0 415,666 - QEN71_RS31490 0.20 -0.8 415,972 - QEN71_RS31490 0.53 +0.1 415,972 - QEN71_RS31490 0.53 -1.6 416,106 + QEN71_RS31490 0.67 +0.1 416,382 + -1.3 416,382 + -0.3 416,382 + +1.3 416,382 + -0.6 416,382 + -0.1 416,382 + -0.0 416,382 + -0.1 416,383 - -0.3 416,383 - -0.3 416,383 - -1.5 416,383 - -0.7 416,383 - +0.0 416,383 - +0.3 416,383 - -0.7 416,383 - -2.3 416,383 - +1.7 416,384 + +0.3 416,385 - -0.5 416,423 - +1.2 416,423 - -0.0 416,429 - -0.5 416,429 - -1.6 416,975 + QEN71_RS31495 0.63 -0.2 416,975 + QEN71_RS31495 0.63 +0.0 416,975 + QEN71_RS31495 0.63 -0.4 416,975 + QEN71_RS31495 0.63 -0.9 416,976 - QEN71_RS31495 0.63 +0.8 416,976 - QEN71_RS31495 0.63 -0.8 417,029 + QEN71_RS31495 0.69 +0.0 417,517 + QEN71_RS31500 0.10 -1.1 417,518 - QEN71_RS31500 0.10 +0.1 417,995 + QEN71_RS31500 0.39 -0.1 417,995 + QEN71_RS31500 0.39 +0.0 417,995 + QEN71_RS31500 0.39 -0.2 417,996 - QEN71_RS31500 0.39 -1.6 418,076 + QEN71_RS31500 0.44 +0.0 418,076 + QEN71_RS31500 0.44 +2.7 418,077 - QEN71_RS31500 0.44 +0.1 418,112 + QEN71_RS31500 0.46 -0.2 418,122 - QEN71_RS31500 0.47 -0.3 418,277 + QEN71_RS31500 0.56 +1.2 418,278 - QEN71_RS31500 0.56 +1.1 418,278 - QEN71_RS31500 0.56 +0.6 418,283 + QEN71_RS31500 0.57 -0.2 418,283 + QEN71_RS31500 0.57 -0.5
Or see this region's nucleotide sequence