Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS31480 and QEN71_RS31485 are separated by 43 nucleotides QEN71_RS31485 and QEN71_RS31490 are separated by 5 nucleotides QEN71_RS31490 and QEN71_RS31495 overlap by 1 nucleotides
QEN71_RS31480: QEN71_RS31480 - ATP-binding cassette domain-containing protein, at 412,845 to 413,924
_RS31480
QEN71_RS31485: QEN71_RS31485 - ABC transporter substrate-binding protein, at 413,968 to 415,467
_RS31485
QEN71_RS31490: QEN71_RS31490 - ABC transporter permease, at 415,473 to 416,417
_RS31490
QEN71_RS31495: QEN71_RS31495 - ABC transporter permease, at 416,417 to 417,301
_RS31495
Position (kb) 413
414
415
416 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 413.064 kb on + strand, within QEN71_RS31480 at 413.064 kb on + strand, within QEN71_RS31480 at 413.064 kb on + strand, within QEN71_RS31480 at 413.064 kb on + strand, within QEN71_RS31480 at 413.064 kb on + strand, within QEN71_RS31480 at 413.065 kb on - strand, within QEN71_RS31480 at 413.065 kb on - strand, within QEN71_RS31480 at 413.065 kb on - strand, within QEN71_RS31480 at 413.065 kb on - strand, within QEN71_RS31480 at 413.065 kb on - strand, within QEN71_RS31480 at 413.532 kb on + strand, within QEN71_RS31480 at 413.533 kb on - strand, within QEN71_RS31480 at 413.579 kb on + strand, within QEN71_RS31480 at 413.595 kb on + strand, within QEN71_RS31480 at 413.596 kb on - strand, within QEN71_RS31480 at 413.886 kb on + strand at 413.887 kb on - strand at 414.107 kb on + strand at 414.503 kb on - strand, within QEN71_RS31485 at 414.503 kb on - strand, within QEN71_RS31485 at 414.577 kb on + strand, within QEN71_RS31485 at 414.577 kb on + strand, within QEN71_RS31485 at 414.578 kb on - strand, within QEN71_RS31485 at 414.745 kb on + strand, within QEN71_RS31485 at 414.746 kb on - strand, within QEN71_RS31485 at 414.746 kb on - strand, within QEN71_RS31485 at 414.746 kb on - strand, within QEN71_RS31485 at 414.746 kb on - strand, within QEN71_RS31485 at 414.746 kb on - strand, within QEN71_RS31485 at 414.746 kb on - strand, within QEN71_RS31485 at 414.746 kb on - strand, within QEN71_RS31485 at 414.746 kb on - strand, within QEN71_RS31485 at 414.746 kb on - strand, within QEN71_RS31485 at 414.748 kb on + strand, within QEN71_RS31485 at 414.748 kb on + strand, within QEN71_RS31485 at 414.748 kb on + strand, within QEN71_RS31485 at 414.749 kb on - strand, within QEN71_RS31485 at 414.749 kb on - strand, within QEN71_RS31485 at 414.749 kb on - strand, within QEN71_RS31485 at 414.877 kb on + strand, within QEN71_RS31485 at 414.877 kb on + strand, within QEN71_RS31485 at 414.877 kb on + strand, within QEN71_RS31485 at 414.916 kb on + strand, within QEN71_RS31485 at 414.919 kb on + strand, within QEN71_RS31485 at 414.919 kb on + strand, within QEN71_RS31485 at 414.919 kb on + strand, within QEN71_RS31485 at 414.920 kb on - strand, within QEN71_RS31485 at 414.920 kb on - strand, within QEN71_RS31485 at 415.015 kb on + strand, within QEN71_RS31485 at 415.156 kb on + strand, within QEN71_RS31485 at 415.156 kb on + strand, within QEN71_RS31485 at 415.157 kb on - strand, within QEN71_RS31485 at 415.157 kb on - strand, within QEN71_RS31485 at 415.157 kb on - strand, within QEN71_RS31485 at 415.157 kb on - strand, within QEN71_RS31485 at 415.207 kb on + strand, within QEN71_RS31485 at 415.207 kb on + strand, within QEN71_RS31485 at 415.208 kb on - strand, within QEN71_RS31485 at 415.240 kb on + strand, within QEN71_RS31485 at 415.315 kb on + strand, within QEN71_RS31485 at 415.315 kb on + strand, within QEN71_RS31485 at 415.361 kb on - strand at 415.367 kb on - strand at 415.636 kb on - strand, within QEN71_RS31490 at 415.666 kb on - strand, within QEN71_RS31490 at 415.972 kb on - strand, within QEN71_RS31490 at 415.972 kb on - strand, within QEN71_RS31490 at 416.106 kb on + strand, within QEN71_RS31490 at 416.382 kb on + strand at 416.382 kb on + strand at 416.382 kb on + strand at 416.382 kb on + strand at 416.382 kb on + strand at 416.382 kb on + strand at 416.382 kb on + strand at 416.383 kb on - strand at 416.383 kb on - strand at 416.383 kb on - strand at 416.383 kb on - strand at 416.383 kb on - strand at 416.383 kb on - strand at 416.383 kb on - strand at 416.383 kb on - strand at 416.383 kb on - strand at 416.384 kb on + strand at 416.385 kb on - strand at 416.423 kb on - strand at 416.423 kb on - strand at 416.429 kb on - strand at 416.429 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 413,064 + QEN71_RS31480 0.20 -0.9 413,064 + QEN71_RS31480 0.20 -0.2 413,064 + QEN71_RS31480 0.20 -0.9 413,064 + QEN71_RS31480 0.20 -2.0 413,064 + QEN71_RS31480 0.20 -0.3 413,065 - QEN71_RS31480 0.20 +0.9 413,065 - QEN71_RS31480 0.20 -0.4 413,065 - QEN71_RS31480 0.20 -1.5 413,065 - QEN71_RS31480 0.20 -0.3 413,065 - QEN71_RS31480 0.20 -0.7 413,532 + QEN71_RS31480 0.64 -1.4 413,533 - QEN71_RS31480 0.64 -2.2 413,579 + QEN71_RS31480 0.68 +0.5 413,595 + QEN71_RS31480 0.69 +0.8 413,596 - QEN71_RS31480 0.70 -2.4 413,886 + +0.2 413,887 - +0.5 414,107 + -0.2 414,503 - QEN71_RS31485 0.36 +0.3 414,503 - QEN71_RS31485 0.36 -2.5 414,577 + QEN71_RS31485 0.41 -3.1 414,577 + QEN71_RS31485 0.41 -0.2 414,578 - QEN71_RS31485 0.41 -0.6 414,745 + QEN71_RS31485 0.52 -0.6 414,746 - QEN71_RS31485 0.52 +0.1 414,746 - QEN71_RS31485 0.52 -0.2 414,746 - QEN71_RS31485 0.52 +0.8 414,746 - QEN71_RS31485 0.52 +0.2 414,746 - QEN71_RS31485 0.52 -2.3 414,746 - QEN71_RS31485 0.52 +2.0 414,746 - QEN71_RS31485 0.52 -0.8 414,746 - QEN71_RS31485 0.52 +0.2 414,746 - QEN71_RS31485 0.52 -0.1 414,748 + QEN71_RS31485 0.52 -0.8 414,748 + QEN71_RS31485 0.52 +0.7 414,748 + QEN71_RS31485 0.52 -0.7 414,749 - QEN71_RS31485 0.52 -1.1 414,749 - QEN71_RS31485 0.52 -1.7 414,749 - QEN71_RS31485 0.52 +0.9 414,877 + QEN71_RS31485 0.61 +1.4 414,877 + QEN71_RS31485 0.61 -1.6 414,877 + QEN71_RS31485 0.61 +1.2 414,916 + QEN71_RS31485 0.63 +0.9 414,919 + QEN71_RS31485 0.63 +0.3 414,919 + QEN71_RS31485 0.63 -1.2 414,919 + QEN71_RS31485 0.63 +0.8 414,920 - QEN71_RS31485 0.63 -1.2 414,920 - QEN71_RS31485 0.63 +0.2 415,015 + QEN71_RS31485 0.70 -0.8 415,156 + QEN71_RS31485 0.79 -0.7 415,156 + QEN71_RS31485 0.79 -2.5 415,157 - QEN71_RS31485 0.79 -1.1 415,157 - QEN71_RS31485 0.79 -1.1 415,157 - QEN71_RS31485 0.79 +1.2 415,157 - QEN71_RS31485 0.79 +0.3 415,207 + QEN71_RS31485 0.83 +0.6 415,207 + QEN71_RS31485 0.83 +0.1 415,208 - QEN71_RS31485 0.83 -0.8 415,240 + QEN71_RS31485 0.85 -0.8 415,315 + QEN71_RS31485 0.90 -1.2 415,315 + QEN71_RS31485 0.90 +0.8 415,361 - +0.2 415,367 - +0.2 415,636 - QEN71_RS31490 0.17 +0.0 415,666 - QEN71_RS31490 0.20 -0.8 415,972 - QEN71_RS31490 0.53 +0.1 415,972 - QEN71_RS31490 0.53 -1.6 416,106 + QEN71_RS31490 0.67 +0.1 416,382 + -1.3 416,382 + -0.3 416,382 + +1.3 416,382 + -0.6 416,382 + -0.1 416,382 + -0.0 416,382 + -0.1 416,383 - -0.3 416,383 - -0.3 416,383 - -1.5 416,383 - -0.7 416,383 - +0.0 416,383 - +0.3 416,383 - -0.7 416,383 - -2.3 416,383 - +1.7 416,384 + +0.3 416,385 - -0.5 416,423 - +1.2 416,423 - -0.0 416,429 - -0.5 416,429 - -1.6
Or see this region's nucleotide sequence