Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS30380 and QEN71_RS30385 are separated by 124 nucleotides QEN71_RS30385 and QEN71_RS30390 are separated by 560 nucleotides QEN71_RS30390 and QEN71_RS30395 are separated by 14 nucleotides
QEN71_RS30380: QEN71_RS30380 - FUSC family protein, at 162,826 to 163,878
_RS30380
QEN71_RS30385: QEN71_RS30385 - hypothetical protein, at 164,003 to 164,203
_RS30385
QEN71_RS30390: QEN71_RS30390 - rubredoxin, at 164,764 to 165,186
_RS30390
QEN71_RS30395: QEN71_RS30395 - hypothetical protein, at 165,201 to 165,548
_RS30395
Position (kb) 164
165 Strain fitness (log2 ratio) -2
-1
0
1
2 at 163.685 kb on + strand, within QEN71_RS30380 at 163.685 kb on + strand, within QEN71_RS30380 at 163.685 kb on + strand, within QEN71_RS30380 at 163.686 kb on - strand, within QEN71_RS30380 at 163.686 kb on - strand, within QEN71_RS30380 at 163.686 kb on - strand, within QEN71_RS30380 at 163.686 kb on - strand, within QEN71_RS30380 at 163.686 kb on - strand, within QEN71_RS30380 at 163.902 kb on + strand at 163.902 kb on + strand at 163.902 kb on + strand at 163.903 kb on - strand at 163.925 kb on + strand at 163.926 kb on - strand at 163.934 kb on + strand at 163.934 kb on + strand at 164.069 kb on + strand, within QEN71_RS30385 at 164.069 kb on + strand, within QEN71_RS30385 at 164.069 kb on + strand, within QEN71_RS30385 at 164.070 kb on - strand, within QEN71_RS30385 at 164.070 kb on - strand, within QEN71_RS30385 at 164.096 kb on + strand, within QEN71_RS30385 at 164.097 kb on - strand, within QEN71_RS30385 at 164.097 kb on - strand, within QEN71_RS30385 at 164.097 kb on - strand, within QEN71_RS30385 at 164.097 kb on - strand, within QEN71_RS30385 at 164.097 kb on - strand, within QEN71_RS30385 at 164.138 kb on - strand, within QEN71_RS30385 at 164.138 kb on - strand, within QEN71_RS30385 at 164.202 kb on - strand at 164.368 kb on + strand at 164.368 kb on + strand at 164.368 kb on + strand at 164.368 kb on + strand at 164.368 kb on + strand at 164.368 kb on + strand at 164.368 kb on + strand at 164.369 kb on - strand at 164.369 kb on - strand at 164.369 kb on - strand at 164.369 kb on - strand at 164.369 kb on - strand at 164.369 kb on - strand at 164.385 kb on + strand at 164.386 kb on - strand at 164.506 kb on + strand at 164.507 kb on - strand at 164.687 kb on + strand at 164.687 kb on + strand at 164.687 kb on + strand at 164.688 kb on - strand at 164.688 kb on - strand at 164.767 kb on + strand at 164.767 kb on + strand at 164.767 kb on + strand at 164.767 kb on + strand at 164.768 kb on - strand at 164.768 kb on - strand at 164.768 kb on - strand at 164.768 kb on - strand at 164.768 kb on - strand at 164.768 kb on - strand at 164.768 kb on - strand at 164.768 kb on - strand at 164.768 kb on - strand at 164.786 kb on + strand at 164.787 kb on - strand at 164.893 kb on + strand, within QEN71_RS30390 at 164.893 kb on + strand, within QEN71_RS30390 at 164.894 kb on - strand, within QEN71_RS30390 at 164.894 kb on - strand, within QEN71_RS30390 at 164.894 kb on - strand, within QEN71_RS30390 at 164.894 kb on - strand, within QEN71_RS30390 at 164.894 kb on - strand, within QEN71_RS30390 at 165.059 kb on - strand, within QEN71_RS30390 at 165.202 kb on + strand at 165.202 kb on + strand at 165.203 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 163,685 + QEN71_RS30380 0.82 +0.1 163,685 + QEN71_RS30380 0.82 +0.4 163,685 + QEN71_RS30380 0.82 -1.8 163,686 - QEN71_RS30380 0.82 +0.2 163,686 - QEN71_RS30380 0.82 -0.3 163,686 - QEN71_RS30380 0.82 -0.1 163,686 - QEN71_RS30380 0.82 -0.4 163,686 - QEN71_RS30380 0.82 +0.1 163,902 + +2.0 163,902 + -0.2 163,902 + -0.3 163,903 - -0.3 163,925 + -0.7 163,926 - -0.6 163,934 + -2.1 163,934 + +2.7 164,069 + QEN71_RS30385 0.33 +0.7 164,069 + QEN71_RS30385 0.33 -0.6 164,069 + QEN71_RS30385 0.33 -0.2 164,070 - QEN71_RS30385 0.33 -0.6 164,070 - QEN71_RS30385 0.33 +0.3 164,096 + QEN71_RS30385 0.46 +0.2 164,097 - QEN71_RS30385 0.47 +0.2 164,097 - QEN71_RS30385 0.47 +0.0 164,097 - QEN71_RS30385 0.47 -1.3 164,097 - QEN71_RS30385 0.47 +0.4 164,097 - QEN71_RS30385 0.47 +1.1 164,138 - QEN71_RS30385 0.67 +0.3 164,138 - QEN71_RS30385 0.67 +0.5 164,202 - -0.3 164,368 + -0.6 164,368 + -0.1 164,368 + -0.5 164,368 + +0.7 164,368 + -2.3 164,368 + -0.5 164,368 + +1.2 164,369 - -1.1 164,369 - -0.6 164,369 - -0.2 164,369 - +0.2 164,369 - -0.3 164,369 - +0.2 164,385 + -2.5 164,386 - -0.3 164,506 + +1.0 164,507 - -1.1 164,687 + -0.2 164,687 + -0.4 164,687 + +0.9 164,688 - -1.7 164,688 - -1.1 164,767 + -2.3 164,767 + +0.1 164,767 + +0.3 164,767 + -0.4 164,768 - -0.6 164,768 - +0.5 164,768 - -1.0 164,768 - +1.6 164,768 - +0.0 164,768 - -0.3 164,768 - -0.1 164,768 - -0.6 164,768 - +0.8 164,786 + +0.6 164,787 - +0.0 164,893 + QEN71_RS30390 0.30 -1.2 164,893 + QEN71_RS30390 0.30 -1.1 164,894 - QEN71_RS30390 0.31 +1.0 164,894 - QEN71_RS30390 0.31 -0.9 164,894 - QEN71_RS30390 0.31 +0.4 164,894 - QEN71_RS30390 0.31 +0.0 164,894 - QEN71_RS30390 0.31 +0.4 165,059 - QEN71_RS30390 0.70 -0.5 165,202 + -0.0 165,202 + +0.6 165,203 - +0.1
Or see this region's nucleotide sequence