Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS22235

Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
4,936,396	+		QEN71_RS22230	0.70	-0.9
4,936,396	+		QEN71_RS22230	0.70	+0.8
4,936,396	+		QEN71_RS22230	0.70	+0.7
4,936,396	+		QEN71_RS22230	0.70	-1.6
4,936,397	-		QEN71_RS22230	0.70	+0.1
4,936,397	-		QEN71_RS22230	0.70	+0.1
4,936,494	+		QEN71_RS22230	0.81	-0.1
4,936,494	+		QEN71_RS22230	0.81	-1.2
4,936,495	-		QEN71_RS22230	0.81	-0.1
4,936,495	-		QEN71_RS22230	0.81	+0.8
4,936,510	+		QEN71_RS22230	0.83	-0.2
4,936,510	+		QEN71_RS22230	0.83	-1.2
4,936,510	+		QEN71_RS22230	0.83	-0.4
4,936,510	+		QEN71_RS22230	0.83	-1.1
4,936,510	+		QEN71_RS22230	0.83	+0.3
4,936,510	+		QEN71_RS22230	0.83	-1.2
4,936,510	+		QEN71_RS22230	0.83	-3.1
4,936,510	+		QEN71_RS22230	0.83	+0.7
4,936,511	-		QEN71_RS22230	0.83	-0.3
4,936,511	-		QEN71_RS22230	0.83	+0.1
4,936,511	-		QEN71_RS22230	0.83	+0.6
4,936,511	-		QEN71_RS22230	0.83	-0.6
4,936,511	-		QEN71_RS22230	0.83	-0.1
4,937,214	+				-0.4
4,937,214	+				+0.2
4,937,219	+				-0.4
4,937,219	+				+0.4
4,937,288	+				-0.3
4,937,315	+				-2.3
4,937,315	+				-1.2
4,937,315	+				-1.8
4,937,315	+				+0.1
4,937,316	-				+0.9
4,937,332	+				+0.0
4,937,332	+				-1.1
4,937,332	+				+1.7
4,937,332	+				+0.9
4,937,333	-				-0.6
4,937,333	-				-0.5
4,937,333	-				-2.1
4,937,333	-				-0.4
4,937,333	-				-0.5
4,937,333	-				-0.7
4,937,333	-				+0.5
4,937,333	-				-0.1
4,937,385	+				-1.3
4,937,385	+				-2.1
4,937,385	+				-0.9
4,937,386	-				-0.8
4,937,386	-				-2.4
4,937,386	-				-1.8
4,937,398	+		QEN71_RS22235	0.11	-1.4
4,937,398	+		QEN71_RS22235	0.11	-0.7
4,937,398	+		QEN71_RS22235	0.11	-0.6
4,937,399	-		QEN71_RS22235	0.11	+1.9
4,937,399	-		QEN71_RS22235	0.11	-1.4
4,937,443	+		QEN71_RS22235	0.17	+0.5
4,937,443	+		QEN71_RS22235	0.17	-1.1
4,937,443	+		QEN71_RS22235	0.17	+0.7
4,937,444	-		QEN71_RS22235	0.17	-0.5
4,937,444	-		QEN71_RS22235	0.17	-0.2
4,937,444	-		QEN71_RS22235	0.17	+0.4
4,937,444	-		QEN71_RS22235	0.17	-0.5
4,937,444	-		QEN71_RS22235	0.17	+2.1
4,937,452	+		QEN71_RS22235	0.18	-0.4
4,937,452	+		QEN71_RS22235	0.18	-1.0
4,937,452	+		QEN71_RS22235	0.18	+0.4
4,937,452	+		QEN71_RS22235	0.18	-0.1
4,937,452	+		QEN71_RS22235	0.18	-1.0
4,937,452	+		QEN71_RS22235	0.18	+0.6
4,937,452	+		QEN71_RS22235	0.18	+0.2
4,937,452	+		QEN71_RS22235	0.18	-1.5
4,937,452	+		QEN71_RS22235	0.18	+0.4
4,937,453	-		QEN71_RS22235	0.18	-0.5
4,937,453	-		QEN71_RS22235	0.18	-0.4
4,937,453	-		QEN71_RS22235	0.18	-0.7
4,937,453	-		QEN71_RS22235	0.18	-1.5
4,937,453	-		QEN71_RS22235	0.18	+1.1
4,937,453	-		QEN71_RS22235	0.18	-1.2
4,937,453	-		QEN71_RS22235	0.18	+1.8
4,937,453	-		QEN71_RS22235	0.18	-0.9
4,937,453	-		QEN71_RS22235	0.18	+1.5
4,937,453	-		QEN71_RS22235	0.18	+2.3
4,937,453	-		QEN71_RS22235	0.18	+1.4
4,937,453	-		QEN71_RS22235	0.18	-1.2
4,937,453	-		QEN71_RS22235	0.18	-0.4
4,937,453	-		QEN71_RS22235	0.18	-0.9
4,937,453	-		QEN71_RS22235	0.18	+1.4
4,937,453	-		QEN71_RS22235	0.18	+0.4
4,937,453	-		QEN71_RS22235	0.18	+0.8
4,937,456	+		QEN71_RS22235	0.19	-0.4
4,937,456	+		QEN71_RS22235	0.19	+0.0
4,937,456	+		QEN71_RS22235	0.19	-1.1
4,937,456	+		QEN71_RS22235	0.19	+1.3
4,937,456	+		QEN71_RS22235	0.19	-0.3
4,937,456	+		QEN71_RS22235	0.19	-2.2
4,937,456	+		QEN71_RS22235	0.19	+1.6
4,937,456	+		QEN71_RS22235	0.19	-1.5
4,937,456	+		QEN71_RS22235	0.19	+1.3
4,937,456	+		QEN71_RS22235	0.19	+0.5
4,937,456	+		QEN71_RS22235	0.19	-1.3
4,937,456	+		QEN71_RS22235	0.19	-0.6
4,937,457	-		QEN71_RS22235	0.19	+0.3
4,937,457	-		QEN71_RS22235	0.19	-0.5
4,937,457	-		QEN71_RS22235	0.19	-0.3
4,937,457	-		QEN71_RS22235	0.19	+0.7
4,937,457	-		QEN71_RS22235	0.19	-2.1
4,937,457	-		QEN71_RS22235	0.19	+0.1
4,937,457	-		QEN71_RS22235	0.19	+0.4
4,937,457	-		QEN71_RS22235	0.19	-1.6
4,937,479	+		QEN71_RS22235	0.22	-0.1
4,937,479	+		QEN71_RS22235	0.22	-2.7
4,937,479	+		QEN71_RS22235	0.22	-0.5
4,937,479	+		QEN71_RS22235	0.22	+0.5
4,937,480	-		QEN71_RS22235	0.22	-0.6
4,937,480	-		QEN71_RS22235	0.22	+1.5
4,937,480	-		QEN71_RS22235	0.22	-0.6
4,937,483	+		QEN71_RS22235	0.22	-0.3
4,937,483	+		QEN71_RS22235	0.22	+0.0
4,937,483	+		QEN71_RS22235	0.22	-1.5
4,937,483	+		QEN71_RS22235	0.22	-1.8
4,937,484	-		QEN71_RS22235	0.22	-0.1
4,937,484	-		QEN71_RS22235	0.22	-1.1
4,937,523	+		QEN71_RS22235	0.27	+0.5
4,937,523	+		QEN71_RS22235	0.27	-0.7
4,937,523	+		QEN71_RS22235	0.27	+0.2
4,937,523	+		QEN71_RS22235	0.27	+0.9
4,937,523	+		QEN71_RS22235	0.27	+0.2
4,937,524	-		QEN71_RS22235	0.28	-2.6
4,937,524	-		QEN71_RS22235	0.28	-1.9
4,937,524	-		QEN71_RS22235	0.28	-1.0
4,937,524	-		QEN71_RS22235	0.28	-0.1
4,937,608	+		QEN71_RS22235	0.38	-0.4
4,937,608	+		QEN71_RS22235	0.38	+1.1
4,937,608	+		QEN71_RS22235	0.38	-0.1
4,937,608	+		QEN71_RS22235	0.38	+0.9
4,937,608	+		QEN71_RS22235	0.38	-0.7
4,937,608	+		QEN71_RS22235	0.38	+0.1
4,937,608	+		QEN71_RS22235	0.38	-1.5
4,937,609	-		QEN71_RS22235	0.38	-0.9
4,937,609	-		QEN71_RS22235	0.38	-0.1
4,937,609	-		QEN71_RS22235	0.38	-1.8
4,937,609	-		QEN71_RS22235	0.38	-0.5
4,937,609	-		QEN71_RS22235	0.38	-0.5
4,937,636	+		QEN71_RS22235	0.42	+0.7
4,937,636	+		QEN71_RS22235	0.42	-0.2
4,937,651	-		QEN71_RS22235	0.44	+0.6
4,937,657	+		QEN71_RS22235	0.45	+0.8
4,937,662	+		QEN71_RS22235	0.45	-1.2
4,937,662	+		QEN71_RS22235	0.45	-0.4
4,937,662	+		QEN71_RS22235	0.45	+0.4
4,937,662	+		QEN71_RS22235	0.45	+1.1
4,937,662	+		QEN71_RS22235	0.45	+0.4
4,937,662	+		QEN71_RS22235	0.45	+0.4
4,937,663	-		QEN71_RS22235	0.45	-0.4
4,937,663	-		QEN71_RS22235	0.45	-0.1
4,937,663	-		QEN71_RS22235	0.45	+0.0
4,937,663	-		QEN71_RS22235	0.45	+1.7
4,937,663	-		QEN71_RS22235	0.45	+0.2
4,937,663	-		QEN71_RS22235	0.45	+0.5
4,937,663	-		QEN71_RS22235	0.45	+0.5
4,937,708	-		QEN71_RS22235	0.51	-0.6
4,937,729	+		QEN71_RS22235	0.54	+0.5
4,937,729	+		QEN71_RS22235	0.54	-0.1
4,937,730	-		QEN71_RS22235	0.54	-0.1
4,937,744	-		QEN71_RS22235	0.56	-1.2
4,937,800	+		QEN71_RS22235	0.63	-2.3
4,937,800	+		QEN71_RS22235	0.63	+0.0
4,937,800	+		QEN71_RS22235	0.63	+0.5
4,937,800	+		QEN71_RS22235	0.63	+0.6
4,937,800	+		QEN71_RS22235	0.63	-1.1
4,937,800	+		QEN71_RS22235	0.63	+1.7
4,937,801	-		QEN71_RS22235	0.63	-0.2
4,937,801	-		QEN71_RS22235	0.63	-1.1
4,938,095	-				-0.4
4,938,114	+				-0.1
4,938,115	-				-0.1
4,938,115	-				+0.4
4,938,115	-				-1.8
4,938,481	+		QEN71_RS22240	0.35	-1.1
4,938,482	-		QEN71_RS22240	0.36	-1.4
4,938,482	-		QEN71_RS22240	0.36	-2.4
4,938,482	-		QEN71_RS22240	0.36	-1.0
4,938,498	-		QEN71_RS22240	0.37	-0.3
4,938,498	-		QEN71_RS22240	0.37	-2.9
4,938,670	+		QEN71_RS22240	0.53	-0.7
4,938,670	+		QEN71_RS22240	0.53	-1.8
4,938,670	+		QEN71_RS22240	0.53	+0.5
4,938,670	+		QEN71_RS22240	0.53	-0.9
4,938,670	+		QEN71_RS22240	0.53	+0.7
4,938,671	-		QEN71_RS22240	0.53	-0.0
4,938,671	-		QEN71_RS22240	0.53	-0.6
4,938,671	-		QEN71_RS22240	0.53	-0.1
4,938,868	+		QEN71_RS22240	0.71	-1.9
4,938,869	-		QEN71_RS22240	0.71	-1.1
4,938,891	-		QEN71_RS22240	0.73	-0.9
4,938,891	-		QEN71_RS22240	0.73	-1.0
4,938,922	+		QEN71_RS22240	0.76	-2.9
4,938,922	+		QEN71_RS22240	0.76	-3.1
4,938,922	+		QEN71_RS22240	0.76	+0.9
4,938,922	+		QEN71_RS22240	0.76	+0.1
4,938,923	-		QEN71_RS22240	0.76	-1.5
4,938,923	-		QEN71_RS22240	0.76	-0.2
4,938,923	-		QEN71_RS22240	0.76	+0.5
4,938,923	-		QEN71_RS22240	0.76	-0.5