Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS19645 and QEN71_RS19650 are separated by 66 nucleotides QEN71_RS19650 and QEN71_RS19655 are separated by 34 nucleotides
QEN71_RS19645: QEN71_RS19645 - C4-dicarboxylate transporter DctA, at 4,376,216 to 4,377,571
_RS19645
QEN71_RS19650: QEN71_RS19650 - hypothetical protein, at 4,377,638 to 4,378,552
_RS19650
QEN71_RS19655: QEN71_RS19655 - amidohydrolase family protein, at 4,378,587 to 4,379,438
_RS19655
Position (kb) 4377
4378
4379 Strain fitness (log2 ratio) -2
-1
0
1 at 4376.640 kb on + strand, within QEN71_RS19645 at 4376.641 kb on - strand, within QEN71_RS19645 at 4376.768 kb on - strand, within QEN71_RS19645 at 4376.853 kb on + strand, within QEN71_RS19645 at 4377.178 kb on - strand, within QEN71_RS19645 at 4377.178 kb on - strand, within QEN71_RS19645 at 4377.298 kb on - strand, within QEN71_RS19645 at 4377.660 kb on - strand at 4377.847 kb on - strand, within QEN71_RS19650 at 4377.917 kb on + strand, within QEN71_RS19650 at 4377.917 kb on + strand, within QEN71_RS19650 at 4377.921 kb on + strand, within QEN71_RS19650 at 4377.922 kb on - strand, within QEN71_RS19650 at 4377.936 kb on + strand, within QEN71_RS19650 at 4378.158 kb on + strand, within QEN71_RS19650 at 4378.272 kb on + strand, within QEN71_RS19650 at 4378.272 kb on + strand, within QEN71_RS19650 at 4378.272 kb on + strand, within QEN71_RS19650 at 4378.273 kb on - strand, within QEN71_RS19650 at 4378.273 kb on - strand, within QEN71_RS19650 at 4378.273 kb on - strand, within QEN71_RS19650 at 4378.276 kb on + strand, within QEN71_RS19650 at 4378.276 kb on + strand, within QEN71_RS19650 at 4378.277 kb on - strand, within QEN71_RS19650 at 4378.356 kb on + strand, within QEN71_RS19650 at 4378.356 kb on + strand, within QEN71_RS19650 at 4378.357 kb on - strand, within QEN71_RS19650 at 4378.555 kb on - strand at 4378.888 kb on + strand, within QEN71_RS19655 at 4378.889 kb on - strand, within QEN71_RS19655 at 4379.013 kb on + strand, within QEN71_RS19655 at 4379.013 kb on + strand, within QEN71_RS19655 at 4379.014 kb on - strand, within QEN71_RS19655 at 4379.014 kb on - strand, within QEN71_RS19655 at 4379.014 kb on - strand, within QEN71_RS19655 at 4379.032 kb on + strand, within QEN71_RS19655 at 4379.032 kb on + strand, within QEN71_RS19655 at 4379.172 kb on + strand, within QEN71_RS19655 at 4379.172 kb on + strand, within QEN71_RS19655 at 4379.233 kb on + strand, within QEN71_RS19655 at 4379.234 kb on - strand, within QEN71_RS19655 at 4379.237 kb on + strand, within QEN71_RS19655 at 4379.237 kb on + strand, within QEN71_RS19655 at 4379.237 kb on + strand, within QEN71_RS19655 at 4379.238 kb on - strand, within QEN71_RS19655 at 4379.512 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 4,376,640 + QEN71_RS19645 0.31 +0.6 4,376,641 - QEN71_RS19645 0.31 -0.8 4,376,768 - QEN71_RS19645 0.41 -1.1 4,376,853 + QEN71_RS19645 0.47 +1.4 4,377,178 - QEN71_RS19645 0.71 -1.5 4,377,178 - QEN71_RS19645 0.71 -0.1 4,377,298 - QEN71_RS19645 0.80 -0.4 4,377,660 - -1.0 4,377,847 - QEN71_RS19650 0.23 -0.5 4,377,917 + QEN71_RS19650 0.30 +0.8 4,377,917 + QEN71_RS19650 0.30 +0.1 4,377,921 + QEN71_RS19650 0.31 -0.4 4,377,922 - QEN71_RS19650 0.31 +0.7 4,377,936 + QEN71_RS19650 0.33 -0.4 4,378,158 + QEN71_RS19650 0.57 -1.0 4,378,272 + QEN71_RS19650 0.69 -0.8 4,378,272 + QEN71_RS19650 0.69 -1.1 4,378,272 + QEN71_RS19650 0.69 -1.4 4,378,273 - QEN71_RS19650 0.69 +0.0 4,378,273 - QEN71_RS19650 0.69 -1.8 4,378,273 - QEN71_RS19650 0.69 -0.2 4,378,276 + QEN71_RS19650 0.70 -0.5 4,378,276 + QEN71_RS19650 0.70 -1.4 4,378,277 - QEN71_RS19650 0.70 -0.1 4,378,356 + QEN71_RS19650 0.78 -1.6 4,378,356 + QEN71_RS19650 0.78 -0.5 4,378,357 - QEN71_RS19650 0.79 +0.4 4,378,555 - -2.7 4,378,888 + QEN71_RS19655 0.35 -1.9 4,378,889 - QEN71_RS19655 0.35 +0.6 4,379,013 + QEN71_RS19655 0.50 -0.8 4,379,013 + QEN71_RS19655 0.50 -0.2 4,379,014 - QEN71_RS19655 0.50 +0.3 4,379,014 - QEN71_RS19655 0.50 -1.9 4,379,014 - QEN71_RS19655 0.50 -0.4 4,379,032 + QEN71_RS19655 0.52 -1.1 4,379,032 + QEN71_RS19655 0.52 +0.5 4,379,172 + QEN71_RS19655 0.69 +0.1 4,379,172 + QEN71_RS19655 0.69 -0.8 4,379,233 + QEN71_RS19655 0.76 +1.0 4,379,234 - QEN71_RS19655 0.76 +0.2 4,379,237 + QEN71_RS19655 0.76 +0.6 4,379,237 + QEN71_RS19655 0.76 -1.5 4,379,237 + QEN71_RS19655 0.76 +0.8 4,379,238 - QEN71_RS19655 0.76 +0.2 4,379,512 - +0.9
Or see this region's nucleotide sequence