Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS18415

Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
4,100,326	+		QEN71_RS18410	0.45	-0.4
4,100,327	-		QEN71_RS18410	0.45	+1.1
4,100,327	-		QEN71_RS18410	0.45	+0.1
4,100,327	-		QEN71_RS18410	0.45	-0.8
4,100,327	-		QEN71_RS18410	0.45	+0.6
4,100,483	+		QEN71_RS18410	0.56	+0.5
4,100,483	+		QEN71_RS18410	0.56	-0.6
4,100,483	+		QEN71_RS18410	0.56	+0.4
4,100,484	-		QEN71_RS18410	0.56	+0.3
4,100,484	-		QEN71_RS18410	0.56	+0.4
4,100,484	-		QEN71_RS18410	0.56	-0.6
4,100,500	+		QEN71_RS18410	0.58	-0.7
4,100,500	+		QEN71_RS18410	0.58	+0.1
4,100,500	+		QEN71_RS18410	0.58	-0.1
4,100,500	+		QEN71_RS18410	0.58	-0.1
4,100,500	+		QEN71_RS18410	0.58	+0.2
4,100,501	-		QEN71_RS18410	0.58	-0.0
4,100,501	-		QEN71_RS18410	0.58	+0.1
4,100,510	+		QEN71_RS18410	0.58	-0.3
4,100,670	-		QEN71_RS18410	0.71	-0.2
4,100,670	-		QEN71_RS18410	0.71	+0.2
4,100,929	+				-0.6
4,100,929	+				+0.9
4,100,930	-				-1.4
4,100,930	-				-0.5
4,100,930	-				-2.1
4,100,930	-				+0.2
4,100,930	-				-0.4
4,101,081	+				+0.1
4,101,081	+				-0.5
4,101,081	+				+1.3
4,101,133	-				+0.8
4,101,162	+				-0.2
4,101,163	-				+0.3
4,101,163	-				+0.2
4,101,165	+				-1.2
4,101,165	+				+0.4
4,101,165	+				-0.7
4,101,166	-				-1.1
4,101,166	-				-1.0
4,101,166	-				+0.1
4,101,166	-				+2.0
4,101,186	+				+1.1
4,101,186	+				-0.2
4,101,186	+				+0.8
4,101,186	+				+1.9
4,101,186	+				+0.8
4,101,186	+				-0.4
4,101,186	+				+1.2
4,101,186	+				-2.1
4,101,187	-				-0.1
4,101,187	-				+0.8
4,101,187	-				-0.3
4,101,187	-				+0.8
4,101,187	-				-1.0
4,101,187	-				-0.3
4,101,187	-				-0.4
4,101,187	-				+0.6
4,101,187	-				+1.5
4,101,187	-				+0.4
4,101,187	-				-1.2
4,101,187	-				-0.1
4,101,187	-				-0.7
4,101,190	+				-0.4
4,101,190	+				-0.0
4,101,190	+				-0.5
4,101,190	+				-2.4
4,101,190	+				+0.3
4,101,190	+				+1.2
4,101,190	+				+0.8
4,101,191	-				-0.2
4,101,198	+				-0.5
4,101,199	-				-0.8
4,101,255	+				-0.2
4,101,255	+				+0.4
4,101,256	-				-1.5
4,101,256	-				-0.6
4,101,256	-				+0.1
4,101,276	+				-0.9
4,101,276	+				-2.4
4,101,277	-				+1.1
4,101,277	-				-0.3
4,101,277	-				-1.0
4,101,278	+				-0.4
4,101,301	+				-0.0
4,101,301	+				-0.1
4,101,301	+				-1.0
4,101,302	-				+0.6
4,101,433	-				+0.1
4,101,449	+				+1.3
4,101,475	-				+0.1
4,101,504	+				+0.3
4,101,504	+				-0.3
4,101,504	+				+0.2
4,101,505	-				-0.0
4,101,505	-				-0.1
4,101,551	+				-0.5
4,101,552	-				-0.4
4,101,552	-				+0.9
4,101,648	+		QEN71_RS18415	0.11	-1.0
4,101,648	+		QEN71_RS18415	0.11	-0.0
4,101,649	-		QEN71_RS18415	0.11	+0.4
4,101,843	+		QEN71_RS18415	0.17	+0.1
4,101,844	-		QEN71_RS18415	0.17	+0.0
4,101,844	-		QEN71_RS18415	0.17	-0.4
4,101,844	-		QEN71_RS18415	0.17	-0.8
4,102,134	+		QEN71_RS18415	0.27	+0.9
4,102,134	+		QEN71_RS18415	0.27	-0.0
4,102,134	+		QEN71_RS18415	0.27	+0.4
4,102,134	+		QEN71_RS18415	0.27	-0.2
4,102,134	+		QEN71_RS18415	0.27	-2.7
4,102,134	+		QEN71_RS18415	0.27	-0.7
4,102,134	+		QEN71_RS18415	0.27	+0.4
4,102,134	+		QEN71_RS18415	0.27	+0.4
4,102,188	+		QEN71_RS18415	0.28	-1.8
4,102,188	+		QEN71_RS18415	0.28	-0.6
4,102,189	-		QEN71_RS18415	0.28	-0.6
4,102,189	-		QEN71_RS18415	0.28	+0.1
4,102,221	+		QEN71_RS18415	0.29	+0.8
4,102,233	+		QEN71_RS18415	0.30	-0.8
4,102,233	+		QEN71_RS18415	0.30	+0.0
4,102,234	-		QEN71_RS18415	0.30	-0.2
4,102,234	-		QEN71_RS18415	0.30	-0.7
4,102,234	-		QEN71_RS18415	0.30	+0.2
4,102,288	-		QEN71_RS18415	0.32	-0.4
4,102,288	-		QEN71_RS18415	0.32	-1.2
4,102,317	+		QEN71_RS18415	0.33	+0.2
4,102,317	+		QEN71_RS18415	0.33	-0.2
4,102,318	-		QEN71_RS18415	0.33	+0.4
4,102,318	-		QEN71_RS18415	0.33	+0.3
4,102,318	-		QEN71_RS18415	0.33	+0.4
4,102,318	-		QEN71_RS18415	0.33	+0.8
4,102,341	+		QEN71_RS18415	0.33	+0.0
4,102,405	-		QEN71_RS18415	0.35	+1.3
4,102,405	-		QEN71_RS18415	0.35	-1.1
4,102,425	+		QEN71_RS18415	0.36	+0.3
4,102,434	+		QEN71_RS18415	0.36	-0.6
4,102,722	+		QEN71_RS18415	0.46	+0.1
4,102,723	-		QEN71_RS18415	0.46	-0.4
4,102,723	-		QEN71_RS18415	0.46	-0.6
4,102,723	-		QEN71_RS18415	0.46	+1.1
4,102,723	-		QEN71_RS18415	0.46	-0.2
4,102,723	-		QEN71_RS18415	0.46	+0.3
4,102,724	+		QEN71_RS18415	0.46	+0.3
4,102,724	+		QEN71_RS18415	0.46	-0.9
4,102,724	+		QEN71_RS18415	0.46	+2.4
4,102,725	-		QEN71_RS18415	0.46	+1.1
4,102,725	-		QEN71_RS18415	0.46	+0.5
4,102,725	-		QEN71_RS18415	0.46	-1.0
4,102,725	-		QEN71_RS18415	0.46	-0.7
4,102,725	-		QEN71_RS18415	0.46	-2.9
4,102,725	-		QEN71_RS18415	0.46	+0.1
4,102,765	-		QEN71_RS18415	0.47	-1.4
4,102,824	+		QEN71_RS18415	0.49	-0.0
4,102,902	+		QEN71_RS18415	0.52	-0.1
4,102,903	-		QEN71_RS18415	0.52	-0.5
4,102,927	-		QEN71_RS18415	0.52	-0.4
4,102,977	+		QEN71_RS18415	0.54	+0.2
4,102,977	+		QEN71_RS18415	0.54	+0.4
4,102,978	-		QEN71_RS18415	0.54	-0.4
4,102,978	-		QEN71_RS18415	0.54	+2.0
4,102,978	-		QEN71_RS18415	0.54	+1.4
4,102,978	-		QEN71_RS18415	0.54	+0.1
4,103,118	+		QEN71_RS18415	0.59	-0.5
4,103,119	-		QEN71_RS18415	0.59	-0.0
4,103,119	-		QEN71_RS18415	0.59	+0.0
4,103,171	+		QEN71_RS18415	0.60	+0.1
4,103,171	+		QEN71_RS18415	0.60	-1.0
4,103,172	-		QEN71_RS18415	0.60	+0.4
4,103,172	-		QEN71_RS18415	0.60	+1.4
4,103,211	-		QEN71_RS18415	0.62	+1.1
4,103,313	+		QEN71_RS18415	0.65	+0.5
4,103,314	-		QEN71_RS18415	0.65	-0.1
4,103,314	-		QEN71_RS18415	0.65	-0.8
4,103,314	-		QEN71_RS18415	0.65	+0.5
4,103,334	+		QEN71_RS18415	0.66	+1.0
4,103,334	+		QEN71_RS18415	0.66	-0.9
4,103,368	-		QEN71_RS18415	0.67	-1.4
4,103,412	+		QEN71_RS18415	0.68	-3.0
4,103,413	-		QEN71_RS18415	0.68	+0.3
4,103,506	+		QEN71_RS18415	0.71	+0.4
4,103,506	+		QEN71_RS18415	0.71	-0.8
4,103,507	-		QEN71_RS18415	0.71	+0.7
4,103,507	-		QEN71_RS18415	0.71	+0.2
4,103,507	-		QEN71_RS18415	0.71	-0.7
4,103,609	+		QEN71_RS18415	0.75	+0.4
4,103,664	+		QEN71_RS18415	0.76	-0.1
4,103,664	+		QEN71_RS18415	0.76	+2.1
4,103,665	-		QEN71_RS18415	0.76	-0.9
4,103,665	-		QEN71_RS18415	0.76	+0.1
4,103,665	-		QEN71_RS18415	0.76	-1.3
4,103,665	-		QEN71_RS18415	0.76	-1.5
4,103,880	+		QEN71_RS18415	0.83	-0.3
4,103,880	+		QEN71_RS18415	0.83	-0.4
4,103,880	+		QEN71_RS18415	0.83	-0.2
4,103,881	-		QEN71_RS18415	0.83	+0.3
4,103,908	-		QEN71_RS18415	0.84	+1.0
4,104,011	+		QEN71_RS18415	0.88	+0.3
4,104,024	+		QEN71_RS18415	0.88	-1.2
4,104,024	+		QEN71_RS18415	0.88	+0.6
4,104,024	+		QEN71_RS18415	0.88	+0.8
4,104,025	-		QEN71_RS18415	0.88	+0.4
4,104,025	-		QEN71_RS18415	0.88	-0.9
4,104,025	-		QEN71_RS18415	0.88	-1.1
4,104,025	-		QEN71_RS18415	0.88	-0.1
4,104,025	-		QEN71_RS18415	0.88	+0.1
4,104,297	+				-0.1
4,104,297	+				-0.8
4,104,297	+				+0.8
4,104,298	-				-0.2
4,104,592	+		QEN71_RS18420	0.20	-0.2
4,104,593	-		QEN71_RS18420	0.21	-1.6
4,104,593	-		QEN71_RS18420	0.21	-0.8
4,104,593	-		QEN71_RS18420	0.21	-1.6
4,104,641	-		QEN71_RS18420	0.26	+1.3
4,104,649	+		QEN71_RS18420	0.27	-0.5
4,104,761	-		QEN71_RS18420	0.38	+1.5
4,104,812	-		QEN71_RS18420	0.44	-0.6
4,104,871	+		QEN71_RS18420	0.50	+0.1
4,104,872	-		QEN71_RS18420	0.50	+0.1
4,104,872	-		QEN71_RS18420	0.50	-2.0
4,104,872	-		QEN71_RS18420	0.50	-0.4
4,104,872	-		QEN71_RS18420	0.50	-0.4
4,105,039	+		QEN71_RS18420	0.68	+1.2
4,105,040	-		QEN71_RS18420	0.68	-0.6
4,105,075	+		QEN71_RS18420	0.72	+0.4
4,105,075	+		QEN71_RS18420	0.72	-0.3
4,105,075	+		QEN71_RS18420	0.72	+0.1
4,105,075	+		QEN71_RS18420	0.72	-0.8
4,105,075	+		QEN71_RS18420	0.72	+1.6
4,105,075	+		QEN71_RS18420	0.72	-1.2
4,105,076	-		QEN71_RS18420	0.72	-0.2
4,105,076	-		QEN71_RS18420	0.72	-2.4
4,105,076	-		QEN71_RS18420	0.72	-3.0
4,105,076	-		QEN71_RS18420	0.72	-1.6
4,105,076	-		QEN71_RS18420	0.72	-1.7
4,105,076	-		QEN71_RS18420	0.72	-1.4
4,105,076	-		QEN71_RS18420	0.72	-0.6
4,105,076	-		QEN71_RS18420	0.72	-0.9
4,105,076	-		QEN71_RS18420	0.72	+0.9
4,105,076	-		QEN71_RS18420	0.72	-0.0
4,105,108	+		QEN71_RS18420	0.75	+0.7
4,105,226	-		QEN71_RS18420	0.88	-1.4
4,105,377	+				-1.7
4,105,378	-				-1.9