Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS10885

Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
2,417,233	+		QEN71_RS10880	0.45	-1.1
2,417,233	+		QEN71_RS10880	0.45	-0.4
2,417,234	-		QEN71_RS10880	0.46	-0.1
2,417,236	+		QEN71_RS10880	0.46	-0.3
2,417,236	+		QEN71_RS10880	0.46	+0.2
2,417,237	-		QEN71_RS10880	0.46	+0.6
2,417,237	-		QEN71_RS10880	0.46	-1.7
2,417,237	-		QEN71_RS10880	0.46	+0.2
2,417,237	-		QEN71_RS10880	0.46	-1.1
2,417,250	-		QEN71_RS10880	0.47	-2.0
2,417,250	-		QEN71_RS10880	0.47	+2.4
2,417,332	+		QEN71_RS10880	0.55	-1.3
2,417,332	+		QEN71_RS10880	0.55	-2.6
2,417,332	+		QEN71_RS10880	0.55	-0.4
2,417,333	-		QEN71_RS10880	0.55	+0.2
2,417,419	+		QEN71_RS10880	0.63	-1.1
2,417,420	-		QEN71_RS10880	0.63	-0.6
2,417,420	-		QEN71_RS10880	0.63	-0.9
2,417,617	+		QEN71_RS10880	0.82	+0.9
2,417,617	+		QEN71_RS10880	0.82	-1.0
2,417,618	-		QEN71_RS10880	0.82	+1.3
2,417,618	-		QEN71_RS10880	0.82	-0.1
2,417,618	-		QEN71_RS10880	0.82	+0.7
2,417,794	+				-1.4
2,417,794	+				+0.5
2,417,794	+				+0.3
2,417,794	+				+0.1
2,417,794	+				+0.6
2,417,794	+				+1.6
2,417,795	-				-0.5
2,417,795	-				-0.3
2,417,795	-				-0.1
2,417,818	+				-0.3
2,417,818	+				+1.7
2,417,818	+				+0.3
2,417,818	+				-1.3
2,417,818	+				+0.3
2,417,818	+				-0.1
2,417,819	-				+0.7
2,417,819	-				+0.8
2,417,850	+				-0.9
2,417,850	+				-0.3
2,417,851	-				+0.4
2,417,851	-				+0.2
2,417,851	-				-0.2
2,417,851	-				-1.3
2,417,867	-				-2.7
2,417,982	+				-1.2
2,417,982	+				-2.9
2,417,982	+				-0.4
2,417,983	-				+0.3
2,417,983	-				+0.4
2,417,987	+				-2.9
2,417,987	+				-0.1
2,418,031	+				-2.4
2,418,032	-				+1.1
2,418,093	+				-0.9
2,418,131	-				-0.6
2,418,419	+				+0.5
2,418,420	-				+0.6
2,418,420	-				-0.1
2,418,420	-				-0.4
2,418,420	-				+0.2
2,418,420	-				+0.2
2,418,420	-				+0.5
2,418,420	-				+0.8
2,418,420	-				-0.4
2,418,626	+		QEN71_RS10885	0.11	+0.7
2,418,626	+		QEN71_RS10885	0.11	+0.4
2,418,626	+		QEN71_RS10885	0.11	-1.0
2,418,626	+		QEN71_RS10885	0.11	-0.3
2,418,627	-		QEN71_RS10885	0.11	-0.2
2,418,627	-		QEN71_RS10885	0.11	-0.2
2,418,627	-		QEN71_RS10885	0.11	+0.9
2,418,980	+		QEN71_RS10885	0.19	+1.4
2,418,980	+		QEN71_RS10885	0.19	+0.1
2,418,980	+		QEN71_RS10885	0.19	+1.2
2,418,980	+		QEN71_RS10885	0.19	+0.7
2,418,980	+		QEN71_RS10885	0.19	-1.3
2,418,981	-		QEN71_RS10885	0.19	-1.5
2,419,131	-		QEN71_RS10885	0.22	+0.3
2,419,408	+		QEN71_RS10885	0.28	-0.7
2,419,517	+		QEN71_RS10885	0.31	-0.4
2,419,517	+		QEN71_RS10885	0.31	+0.3
2,419,541	+		QEN71_RS10885	0.31	-0.3
2,419,541	+		QEN71_RS10885	0.31	-0.4
2,419,541	+		QEN71_RS10885	0.31	+2.7
2,419,541	+		QEN71_RS10885	0.31	+0.0
2,419,541	+		QEN71_RS10885	0.31	+0.1
2,419,541	+		QEN71_RS10885	0.31	+0.6
2,419,541	+		QEN71_RS10885	0.31	-1.2
2,419,542	-		QEN71_RS10885	0.31	+1.9
2,419,575	-		QEN71_RS10885	0.32	+0.6
2,419,604	+		QEN71_RS10885	0.33	+0.2
2,419,604	+		QEN71_RS10885	0.33	-0.4
2,419,605	-		QEN71_RS10885	0.33	+0.9
2,419,605	-		QEN71_RS10885	0.33	-1.3
2,419,659	+		QEN71_RS10885	0.34	+0.6
2,419,659	+		QEN71_RS10885	0.34	-0.3
2,419,659	+		QEN71_RS10885	0.34	+1.0
2,419,659	+		QEN71_RS10885	0.34	-0.9
2,419,660	-		QEN71_RS10885	0.34	-1.6
2,419,660	-		QEN71_RS10885	0.34	-0.5
2,419,660	-		QEN71_RS10885	0.34	+1.3
2,419,660	-		QEN71_RS10885	0.34	+0.6
2,419,662	-		QEN71_RS10885	0.34	-2.4
2,419,662	-		QEN71_RS10885	0.34	-0.8
2,419,704	-		QEN71_RS10885	0.35	-2.4
2,420,135	+		QEN71_RS10885	0.45	+0.2
2,420,136	-		QEN71_RS10885	0.45	-0.1
2,420,136	-		QEN71_RS10885	0.45	-0.9
2,420,182	+		QEN71_RS10885	0.46	-0.0
2,420,399	+		QEN71_RS10885	0.50	+1.2
2,420,399	+		QEN71_RS10885	0.50	+0.2
2,420,427	+		QEN71_RS10885	0.51	-1.4
2,420,427	+		QEN71_RS10885	0.51	-1.0
2,420,427	+		QEN71_RS10885	0.51	-0.2
2,420,427	+		QEN71_RS10885	0.51	+1.0
2,420,427	+		QEN71_RS10885	0.51	-0.7
2,420,427	+		QEN71_RS10885	0.51	+1.3
2,420,428	-		QEN71_RS10885	0.51	+0.4
2,420,428	-		QEN71_RS10885	0.51	-2.1
2,420,428	-		QEN71_RS10885	0.51	+1.8
2,420,510	+		QEN71_RS10885	0.53	-0.1
2,420,511	-		QEN71_RS10885	0.53	-0.2
2,420,513	-		QEN71_RS10885	0.53	-0.4
2,420,864	+		QEN71_RS10885	0.61	-1.0
2,420,865	-		QEN71_RS10885	0.61	+0.2
2,421,095	+		QEN71_RS10885	0.66	-0.2
2,421,147	-		QEN71_RS10885	0.67	+1.2
2,421,147	-		QEN71_RS10885	0.67	-1.1
2,421,347	+		QEN71_RS10885	0.72	-0.8
2,421,429	-		QEN71_RS10885	0.73	-3.1
2,421,429	-		QEN71_RS10885	0.73	-0.9
2,421,430	+		QEN71_RS10885	0.73	-0.4
2,421,430	+		QEN71_RS10885	0.73	-0.6
2,421,430	+		QEN71_RS10885	0.73	+1.3
2,421,430	+		QEN71_RS10885	0.73	+0.1
2,421,431	-		QEN71_RS10885	0.73	-1.3
2,421,431	-		QEN71_RS10885	0.73	-0.5
2,421,431	-		QEN71_RS10885	0.73	-0.4
2,421,431	-		QEN71_RS10885	0.73	-0.1
2,421,558	+		QEN71_RS10885	0.76	-0.4
2,421,558	+		QEN71_RS10885	0.76	+0.6
2,421,558	+		QEN71_RS10885	0.76	-0.9
2,421,559	-		QEN71_RS10885	0.76	-3.6
2,421,559	-		QEN71_RS10885	0.76	+0.0
2,421,559	-		QEN71_RS10885	0.76	-0.0
2,421,559	-		QEN71_RS10885	0.76	-1.0
2,421,559	-		QEN71_RS10885	0.76	-0.5
2,421,632	+		QEN71_RS10885	0.78	-0.9
2,421,633	-		QEN71_RS10885	0.78	-3.7
2,421,633	-		QEN71_RS10885	0.78	+0.9
2,421,633	-		QEN71_RS10885	0.78	-0.5
2,421,787	+		QEN71_RS10885	0.81	-0.6
2,421,787	+		QEN71_RS10885	0.81	+0.0
2,421,788	-		QEN71_RS10885	0.81	-0.4
2,422,011	-		QEN71_RS10885	0.86	-0.1
2,422,176	+				+0.6
2,422,177	-				-2.3
2,422,177	-				+0.4
2,422,211	+				-0.3
2,422,211	+				+0.5
2,422,212	-				-0.9
2,422,286	+				+0.3
2,422,286	+				+0.6
2,422,286	+				+0.1
2,422,286	+				-0.8
2,422,287	-				-0.6
2,422,287	-				+0.9
2,422,512	-				+0.9
2,422,619	+				-0.7
2,422,622	+				-1.6
2,422,714	+				+0.2
2,422,715	-				-0.5
2,422,775	-				+0.2
2,422,819	+				-0.9
2,422,819	+				+0.1
2,422,820	-				+1.8
2,422,820	-				+0.5
2,422,820	-				+0.5
2,422,820	-				-0.1
2,422,820	-				+0.4
2,422,820	-				-1.6
2,422,820	-				-0.4
2,422,849	+				-0.3
2,422,990	+		QEN71_RS10890	0.19	+2.0
2,422,990	+		QEN71_RS10890	0.19	-0.2
2,422,991	-		QEN71_RS10890	0.19	-0.3
2,423,092	+		QEN71_RS10890	0.25	-0.4
2,423,093	-		QEN71_RS10890	0.25	-1.9
2,423,143	+		QEN71_RS10890	0.29	+0.1
2,423,144	-		QEN71_RS10890	0.29	+0.1
2,423,152	+		QEN71_RS10890	0.29	+0.6
2,423,153	-		QEN71_RS10890	0.29	+0.2
2,423,153	-		QEN71_RS10890	0.29	-2.4
2,423,153	-		QEN71_RS10890	0.29	-0.3
2,423,155	+		QEN71_RS10890	0.29	-2.0
2,423,155	+		QEN71_RS10890	0.29	-0.3
2,423,155	+		QEN71_RS10890	0.29	+0.7
2,423,155	+		QEN71_RS10890	0.29	-3.6
2,423,155	+		QEN71_RS10890	0.29	-0.0
2,423,165	+		QEN71_RS10890	0.30	+0.2
2,423,165	+		QEN71_RS10890	0.30	+0.6
2,423,166	-		QEN71_RS10890	0.30	-0.2
2,423,166	-		QEN71_RS10890	0.30	+0.3
2,423,176	+		QEN71_RS10890	0.31	-0.6
2,423,176	+		QEN71_RS10890	0.31	-0.2
2,423,177	-		QEN71_RS10890	0.31	+0.6
2,423,177	-		QEN71_RS10890	0.31	-1.5
2,423,467	+		QEN71_RS10890	0.49	-0.0
2,423,468	-		QEN71_RS10890	0.49	-0.5
2,423,596	+		QEN71_RS10890	0.58	-0.1
2,423,597	-		QEN71_RS10890	0.58	-1.1
2,423,620	+		QEN71_RS10890	0.59	-0.2
2,423,620	+		QEN71_RS10890	0.59	+0.0
2,423,620	+		QEN71_RS10890	0.59	-0.3
2,423,621	-		QEN71_RS10890	0.59	+1.8
2,423,621	-		QEN71_RS10890	0.59	-0.2