Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS07735 and QEN71_RS07740 are separated by 21 nucleotides QEN71_RS07740 and QEN71_RS07745 are separated by 61 nucleotides QEN71_RS07745 and QEN71_RS07750 are separated by 33 nucleotides QEN71_RS07750 and QEN71_RS07755 are separated by 6 nucleotides
QEN71_RS07735: QEN71_RS07735 - ABC transporter permease subunit, at 1,715,036 to 1,715,788
_RS07735
QEN71_RS07740: QEN71_RS07740 - ATP-binding cassette domain-containing protein, at 1,715,810 to 1,716,601
_RS07740
QEN71_RS07745: QEN71_RS07745 - histidine ammonia-lyase, at 1,716,663 to 1,718,270
_RS07745
QEN71_RS07750: QEN71_RS07750 - histidine utilization repressor, at 1,718,304 to 1,719,059
_RS07750
QEN71_RS07755: QEN71_RS07755 - histidine utilization repressor, at 1,719,066 to 1,719,815
_RS07755
Position (kb) 1716
1717
1718
1719 Strain fitness (log2 ratio) -1
0
1
2
3 at 1716.828 kb on - strand, within QEN71_RS07745 at 1717.015 kb on + strand, within QEN71_RS07745 at 1717.015 kb on + strand, within QEN71_RS07745 at 1717.016 kb on - strand, within QEN71_RS07745 at 1717.016 kb on - strand, within QEN71_RS07745 at 1717.047 kb on + strand, within QEN71_RS07745 at 1717.047 kb on + strand, within QEN71_RS07745 at 1717.047 kb on + strand, within QEN71_RS07745 at 1717.047 kb on + strand, within QEN71_RS07745 at 1717.047 kb on + strand, within QEN71_RS07745 at 1717.049 kb on + strand, within QEN71_RS07745 at 1717.050 kb on - strand, within QEN71_RS07745 at 1717.050 kb on - strand, within QEN71_RS07745 at 1717.083 kb on + strand, within QEN71_RS07745 at 1717.094 kb on + strand, within QEN71_RS07745 at 1717.094 kb on + strand, within QEN71_RS07745 at 1717.806 kb on + strand, within QEN71_RS07745 at 1717.806 kb on + strand, within QEN71_RS07745 at 1718.269 kb on - strand at 1718.311 kb on + strand at 1718.386 kb on - strand, within QEN71_RS07750 at 1718.404 kb on - strand, within QEN71_RS07750 at 1718.568 kb on + strand, within QEN71_RS07750 at 1718.568 kb on + strand, within QEN71_RS07750 at 1718.568 kb on + strand, within QEN71_RS07750 at 1718.568 kb on + strand, within QEN71_RS07750 at 1718.569 kb on - strand, within QEN71_RS07750 at 1718.569 kb on - strand, within QEN71_RS07750 at 1718.587 kb on - strand, within QEN71_RS07750 at 1718.775 kb on + strand, within QEN71_RS07750 at 1718.788 kb on - strand, within QEN71_RS07750 at 1718.853 kb on + strand, within QEN71_RS07750 at 1718.853 kb on + strand, within QEN71_RS07750 at 1718.854 kb on - strand, within QEN71_RS07750 at 1718.854 kb on - strand, within QEN71_RS07750 at 1718.898 kb on + strand, within QEN71_RS07750 at 1718.898 kb on + strand, within QEN71_RS07750 at 1719.063 kb on + strand at 1719.068 kb on - strand at 1719.086 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 1,716,828 - QEN71_RS07745 0.10 +0.0 1,717,015 + QEN71_RS07745 0.22 -1.6 1,717,015 + QEN71_RS07745 0.22 +1.2 1,717,016 - QEN71_RS07745 0.22 -0.5 1,717,016 - QEN71_RS07745 0.22 -1.3 1,717,047 + QEN71_RS07745 0.24 -0.3 1,717,047 + QEN71_RS07745 0.24 -0.1 1,717,047 + QEN71_RS07745 0.24 +0.3 1,717,047 + QEN71_RS07745 0.24 -0.3 1,717,047 + QEN71_RS07745 0.24 +0.7 1,717,049 + QEN71_RS07745 0.24 -0.6 1,717,050 - QEN71_RS07745 0.24 -0.0 1,717,050 - QEN71_RS07745 0.24 -0.8 1,717,083 + QEN71_RS07745 0.26 -0.3 1,717,094 + QEN71_RS07745 0.27 +2.0 1,717,094 + QEN71_RS07745 0.27 -0.6 1,717,806 + QEN71_RS07745 0.71 -0.6 1,717,806 + QEN71_RS07745 0.71 -0.2 1,718,269 - -1.2 1,718,311 + +1.8 1,718,386 - QEN71_RS07750 0.11 +1.7 1,718,404 - QEN71_RS07750 0.13 -0.2 1,718,568 + QEN71_RS07750 0.35 -0.6 1,718,568 + QEN71_RS07750 0.35 -0.1 1,718,568 + QEN71_RS07750 0.35 -1.3 1,718,568 + QEN71_RS07750 0.35 -0.3 1,718,569 - QEN71_RS07750 0.35 -0.7 1,718,569 - QEN71_RS07750 0.35 +0.4 1,718,587 - QEN71_RS07750 0.37 +1.3 1,718,775 + QEN71_RS07750 0.62 -0.3 1,718,788 - QEN71_RS07750 0.64 -0.8 1,718,853 + QEN71_RS07750 0.73 +2.9 1,718,853 + QEN71_RS07750 0.73 -0.4 1,718,854 - QEN71_RS07750 0.73 -0.6 1,718,854 - QEN71_RS07750 0.73 +2.0 1,718,898 + QEN71_RS07750 0.79 +0.4 1,718,898 + QEN71_RS07750 0.79 +0.0 1,719,063 + +0.2 1,719,068 - +2.8 1,719,086 + +1.4
Or see this region's nucleotide sequence