Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS05675 and QEN71_RS05680 are separated by 84 nucleotides QEN71_RS05680 and QEN71_RS05685 are separated by 170 nucleotides QEN71_RS05685 and QEN71_RS05690 are separated by 175 nucleotides
QEN71_RS05675: QEN71_RS05675 - nitrogen regulation protein NR(I), at 1,254,708 to 1,256,222
_RS05675
QEN71_RS05680: QEN71_RS05680 - exodeoxyribonuclease III, at 1,256,307 to 1,257,083
_RS05680
QEN71_RS05685: QEN71_RS05685 - tRNA-Met, at 1,257,254 to 1,257,330
_RS05685
QEN71_RS05690: QEN71_RS05690 - amidohydrolase family protein, at 1,257,506 to 1,258,795
_RS05690
Position (kb) 1256
1257
1258 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1255.427 kb on + strand, within QEN71_RS05675 at 1255.427 kb on + strand, within QEN71_RS05675 at 1255.428 kb on - strand, within QEN71_RS05675 at 1255.482 kb on + strand, within QEN71_RS05675 at 1255.482 kb on + strand, within QEN71_RS05675 at 1255.482 kb on + strand, within QEN71_RS05675 at 1255.483 kb on - strand, within QEN71_RS05675 at 1255.483 kb on - strand, within QEN71_RS05675 at 1255.499 kb on + strand, within QEN71_RS05675 at 1255.499 kb on + strand, within QEN71_RS05675 at 1255.499 kb on + strand, within QEN71_RS05675 at 1255.499 kb on + strand, within QEN71_RS05675 at 1255.499 kb on + strand, within QEN71_RS05675 at 1255.500 kb on - strand, within QEN71_RS05675 at 1255.500 kb on - strand, within QEN71_RS05675 at 1255.500 kb on - strand, within QEN71_RS05675 at 1255.500 kb on - strand, within QEN71_RS05675 at 1255.590 kb on + strand, within QEN71_RS05675 at 1255.590 kb on + strand, within QEN71_RS05675 at 1255.590 kb on + strand, within QEN71_RS05675 at 1255.590 kb on + strand, within QEN71_RS05675 at 1255.590 kb on + strand, within QEN71_RS05675 at 1255.590 kb on + strand, within QEN71_RS05675 at 1255.737 kb on + strand, within QEN71_RS05675 at 1255.737 kb on + strand, within QEN71_RS05675 at 1255.737 kb on + strand, within QEN71_RS05675 at 1255.737 kb on + strand, within QEN71_RS05675 at 1255.738 kb on - strand, within QEN71_RS05675 at 1255.738 kb on - strand, within QEN71_RS05675 at 1255.738 kb on - strand, within QEN71_RS05675 at 1255.738 kb on - strand, within QEN71_RS05675 at 1255.738 kb on - strand, within QEN71_RS05675 at 1255.738 kb on - strand, within QEN71_RS05675 at 1255.738 kb on - strand, within QEN71_RS05675 at 1256.181 kb on - strand at 1256.187 kb on - strand at 1256.220 kb on + strand at 1256.220 kb on + strand at 1256.220 kb on + strand at 1256.221 kb on - strand at 1256.221 kb on - strand at 1256.295 kb on + strand at 1256.295 kb on + strand at 1256.296 kb on - strand at 1256.296 kb on - strand at 1256.296 kb on - strand at 1256.298 kb on + strand at 1256.298 kb on + strand at 1256.299 kb on - strand at 1256.308 kb on + strand at 1256.308 kb on + strand at 1256.308 kb on + strand at 1256.309 kb on - strand at 1256.309 kb on - strand at 1256.635 kb on + strand, within QEN71_RS05680 at 1256.635 kb on + strand, within QEN71_RS05680 at 1256.636 kb on - strand, within QEN71_RS05680 at 1256.719 kb on + strand, within QEN71_RS05680 at 1256.719 kb on + strand, within QEN71_RS05680 at 1256.719 kb on + strand, within QEN71_RS05680 at 1256.720 kb on - strand, within QEN71_RS05680 at 1256.720 kb on - strand, within QEN71_RS05680 at 1256.761 kb on + strand, within QEN71_RS05680 at 1256.762 kb on - strand, within QEN71_RS05680 at 1256.762 kb on - strand, within QEN71_RS05680 at 1256.835 kb on - strand, within QEN71_RS05680 at 1256.899 kb on + strand, within QEN71_RS05680 at 1256.899 kb on + strand, within QEN71_RS05680 at 1256.899 kb on + strand, within QEN71_RS05680 at 1256.899 kb on + strand, within QEN71_RS05680 at 1256.899 kb on + strand, within QEN71_RS05680 at 1256.900 kb on - strand, within QEN71_RS05680 at 1256.900 kb on - strand, within QEN71_RS05680 at 1257.011 kb on + strand at 1257.011 kb on + strand at 1257.011 kb on + strand at 1257.075 kb on + strand at 1257.123 kb on + strand at 1257.124 kb on - strand at 1257.124 kb on - strand at 1257.163 kb on + strand at 1257.163 kb on + strand at 1257.209 kb on + strand at 1257.210 kb on - strand at 1257.210 kb on - strand at 1257.210 kb on - strand at 1257.210 kb on - strand at 1257.210 kb on - strand at 1257.210 kb on - strand at 1257.210 kb on - strand at 1257.210 kb on - strand at 1257.210 kb on - strand at 1257.210 kb on - strand at 1257.210 kb on - strand at 1257.210 kb on - strand at 1257.210 kb on - strand at 1257.210 kb on - strand at 1257.210 kb on - strand at 1257.212 kb on - strand at 1257.212 kb on - strand at 1257.212 kb on - strand at 1257.212 kb on - strand at 1257.212 kb on - strand at 1257.294 kb on - strand, within QEN71_RS05685 at 1257.397 kb on + strand at 1257.397 kb on + strand at 1257.397 kb on + strand at 1257.397 kb on + strand at 1257.397 kb on + strand at 1257.397 kb on + strand at 1257.397 kb on + strand at 1257.397 kb on + strand at 1257.398 kb on - strand at 1257.398 kb on - strand at 1257.398 kb on - strand at 1257.406 kb on + strand at 1257.436 kb on + strand at 1257.436 kb on + strand at 1257.436 kb on + strand at 1257.437 kb on - strand at 1257.437 kb on - strand at 1257.437 kb on - strand at 1257.437 kb on - strand at 1257.444 kb on + strand at 1257.476 kb on - strand at 1257.476 kb on - strand at 1257.491 kb on + strand at 1257.491 kb on + strand at 1257.491 kb on + strand at 1257.491 kb on + strand at 1257.492 kb on - strand at 1257.492 kb on - strand at 1257.492 kb on - strand at 1257.492 kb on - strand at 1257.492 kb on - strand at 1257.492 kb on - strand at 1257.492 kb on - strand at 1257.492 kb on - strand at 1257.492 kb on - strand at 1257.531 kb on + strand at 1257.531 kb on + strand at 1257.531 kb on + strand at 1257.532 kb on - strand at 1257.532 kb on - strand at 1257.532 kb on - strand at 1257.691 kb on + strand, within QEN71_RS05690 at 1257.691 kb on + strand, within QEN71_RS05690 at 1257.692 kb on - strand, within QEN71_RS05690 at 1257.710 kb on + strand, within QEN71_RS05690 at 1257.710 kb on + strand, within QEN71_RS05690 at 1257.711 kb on - strand, within QEN71_RS05690 at 1257.711 kb on - strand, within QEN71_RS05690 at 1257.711 kb on - strand, within QEN71_RS05690 at 1257.762 kb on + strand, within QEN71_RS05690 at 1257.821 kb on + strand, within QEN71_RS05690 at 1257.938 kb on + strand, within QEN71_RS05690 at 1257.938 kb on + strand, within QEN71_RS05690 at 1257.938 kb on + strand, within QEN71_RS05690 at 1257.938 kb on + strand, within QEN71_RS05690 at 1257.938 kb on + strand, within QEN71_RS05690 at 1257.938 kb on + strand, within QEN71_RS05690 at 1257.938 kb on + strand, within QEN71_RS05690 at 1257.938 kb on + strand, within QEN71_RS05690 at 1257.938 kb on + strand, within QEN71_RS05690 at 1257.938 kb on + strand, within QEN71_RS05690 at 1257.939 kb on - strand, within QEN71_RS05690 at 1257.939 kb on - strand, within QEN71_RS05690 at 1257.939 kb on - strand, within QEN71_RS05690 at 1257.939 kb on - strand, within QEN71_RS05690 at 1257.939 kb on - strand, within QEN71_RS05690 at 1257.939 kb on - strand, within QEN71_RS05690 at 1257.939 kb on - strand, within QEN71_RS05690 at 1257.939 kb on - strand, within QEN71_RS05690 at 1257.939 kb on - strand, within QEN71_RS05690 at 1257.939 kb on - strand, within QEN71_RS05690 at 1257.940 kb on + strand, within QEN71_RS05690 at 1257.940 kb on + strand, within QEN71_RS05690 at 1257.940 kb on + strand, within QEN71_RS05690 at 1257.940 kb on + strand, within QEN71_RS05690 at 1257.940 kb on + strand, within QEN71_RS05690 at 1257.940 kb on + strand, within QEN71_RS05690 at 1257.941 kb on - strand, within QEN71_RS05690 at 1257.941 kb on - strand, within QEN71_RS05690 at 1257.941 kb on - strand, within QEN71_RS05690 at 1257.941 kb on - strand, within QEN71_RS05690 at 1257.941 kb on - strand, within QEN71_RS05690 at 1257.941 kb on - strand, within QEN71_RS05690 at 1257.941 kb on - strand, within QEN71_RS05690
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 1,255,427 + QEN71_RS05675 0.47 -0.4 1,255,427 + QEN71_RS05675 0.47 -2.4 1,255,428 - QEN71_RS05675 0.48 -1.9 1,255,482 + QEN71_RS05675 0.51 -1.1 1,255,482 + QEN71_RS05675 0.51 -0.3 1,255,482 + QEN71_RS05675 0.51 +0.6 1,255,483 - QEN71_RS05675 0.51 +1.2 1,255,483 - QEN71_RS05675 0.51 -0.2 1,255,499 + QEN71_RS05675 0.52 +0.1 1,255,499 + QEN71_RS05675 0.52 +0.3 1,255,499 + QEN71_RS05675 0.52 +1.2 1,255,499 + QEN71_RS05675 0.52 -0.8 1,255,499 + QEN71_RS05675 0.52 -0.6 1,255,500 - QEN71_RS05675 0.52 +1.2 1,255,500 - QEN71_RS05675 0.52 -3.0 1,255,500 - QEN71_RS05675 0.52 +0.6 1,255,500 - QEN71_RS05675 0.52 +1.7 1,255,590 + QEN71_RS05675 0.58 -2.6 1,255,590 + QEN71_RS05675 0.58 +1.2 1,255,590 + QEN71_RS05675 0.58 -0.3 1,255,590 + QEN71_RS05675 0.58 +0.0 1,255,590 + QEN71_RS05675 0.58 -0.4 1,255,590 + QEN71_RS05675 0.58 -0.2 1,255,737 + QEN71_RS05675 0.68 +0.5 1,255,737 + QEN71_RS05675 0.68 +0.6 1,255,737 + QEN71_RS05675 0.68 -0.9 1,255,737 + QEN71_RS05675 0.68 +0.5 1,255,738 - QEN71_RS05675 0.68 -0.3 1,255,738 - QEN71_RS05675 0.68 -0.8 1,255,738 - QEN71_RS05675 0.68 -0.2 1,255,738 - QEN71_RS05675 0.68 -1.8 1,255,738 - QEN71_RS05675 0.68 -2.6 1,255,738 - QEN71_RS05675 0.68 -0.0 1,255,738 - QEN71_RS05675 0.68 +0.4 1,256,181 - +0.2 1,256,187 - -0.0 1,256,220 + +1.0 1,256,220 + -0.2 1,256,220 + -0.4 1,256,221 - -0.6 1,256,221 - -0.6 1,256,295 + -0.6 1,256,295 + +0.5 1,256,296 - +0.1 1,256,296 - -0.9 1,256,296 - -0.8 1,256,298 + -0.2 1,256,298 + -0.3 1,256,299 - +0.5 1,256,308 + -0.5 1,256,308 + +1.1 1,256,308 + +0.6 1,256,309 - -0.8 1,256,309 - +0.4 1,256,635 + QEN71_RS05680 0.42 +0.1 1,256,635 + QEN71_RS05680 0.42 -1.8 1,256,636 - QEN71_RS05680 0.42 -1.7 1,256,719 + QEN71_RS05680 0.53 -1.6 1,256,719 + QEN71_RS05680 0.53 +0.5 1,256,719 + QEN71_RS05680 0.53 -0.4 1,256,720 - QEN71_RS05680 0.53 -0.8 1,256,720 - QEN71_RS05680 0.53 -0.9 1,256,761 + QEN71_RS05680 0.58 +2.0 1,256,762 - QEN71_RS05680 0.59 -1.0 1,256,762 - QEN71_RS05680 0.59 -0.8 1,256,835 - QEN71_RS05680 0.68 -0.0 1,256,899 + QEN71_RS05680 0.76 -2.4 1,256,899 + QEN71_RS05680 0.76 +0.7 1,256,899 + QEN71_RS05680 0.76 -0.7 1,256,899 + QEN71_RS05680 0.76 -0.4 1,256,899 + QEN71_RS05680 0.76 -0.9 1,256,900 - QEN71_RS05680 0.76 -0.4 1,256,900 - QEN71_RS05680 0.76 -1.1 1,257,011 + -0.4 1,257,011 + -0.4 1,257,011 + -1.5 1,257,075 + -0.4 1,257,123 + +2.1 1,257,124 - +0.7 1,257,124 - +1.3 1,257,163 + -2.2 1,257,163 + +1.3 1,257,209 + -1.6 1,257,210 - -0.6 1,257,210 - +1.8 1,257,210 - +0.1 1,257,210 - -0.9 1,257,210 - +0.2 1,257,210 - -0.9 1,257,210 - -0.8 1,257,210 - +0.1 1,257,210 - -0.6 1,257,210 - -1.0 1,257,210 - -1.7 1,257,210 - -0.0 1,257,210 - +0.6 1,257,210 - +0.7 1,257,210 - +0.5 1,257,212 - +1.1 1,257,212 - -0.3 1,257,212 - +0.1 1,257,212 - +0.7 1,257,212 - +0.9 1,257,294 - QEN71_RS05685 0.52 +0.0 1,257,397 + +0.1 1,257,397 + -0.7 1,257,397 + +0.9 1,257,397 + -1.0 1,257,397 + +0.2 1,257,397 + -0.4 1,257,397 + -0.2 1,257,397 + -0.2 1,257,398 - +0.5 1,257,398 - +0.4 1,257,398 - +2.0 1,257,406 + +0.9 1,257,436 + +0.4 1,257,436 + -0.4 1,257,436 + -0.5 1,257,437 - +0.4 1,257,437 - +0.4 1,257,437 - -0.0 1,257,437 - -1.0 1,257,444 + -0.8 1,257,476 - -0.8 1,257,476 - -2.3 1,257,491 + -0.4 1,257,491 + +2.0 1,257,491 + +0.3 1,257,491 + +0.6 1,257,492 - -1.0 1,257,492 - -0.0 1,257,492 - -0.5 1,257,492 - +2.2 1,257,492 - -0.3 1,257,492 - +1.5 1,257,492 - +0.1 1,257,492 - -1.6 1,257,492 - +0.8 1,257,531 + -2.5 1,257,531 + +0.4 1,257,531 + -1.0 1,257,532 - +0.7 1,257,532 - +0.2 1,257,532 - -0.4 1,257,691 + QEN71_RS05690 0.14 -0.6 1,257,691 + QEN71_RS05690 0.14 +1.5 1,257,692 - QEN71_RS05690 0.14 +0.3 1,257,710 + QEN71_RS05690 0.16 -0.4 1,257,710 + QEN71_RS05690 0.16 -0.9 1,257,711 - QEN71_RS05690 0.16 -1.5 1,257,711 - QEN71_RS05690 0.16 -0.9 1,257,711 - QEN71_RS05690 0.16 +0.4 1,257,762 + QEN71_RS05690 0.20 +1.7 1,257,821 + QEN71_RS05690 0.24 -1.7 1,257,938 + QEN71_RS05690 0.33 +0.7 1,257,938 + QEN71_RS05690 0.33 +0.1 1,257,938 + QEN71_RS05690 0.33 -1.4 1,257,938 + QEN71_RS05690 0.33 -0.0 1,257,938 + QEN71_RS05690 0.33 -1.6 1,257,938 + QEN71_RS05690 0.33 +1.2 1,257,938 + QEN71_RS05690 0.33 +0.2 1,257,938 + QEN71_RS05690 0.33 +0.5 1,257,938 + QEN71_RS05690 0.33 -0.2 1,257,938 + QEN71_RS05690 0.33 +0.8 1,257,939 - QEN71_RS05690 0.34 +0.7 1,257,939 - QEN71_RS05690 0.34 -0.9 1,257,939 - QEN71_RS05690 0.34 +0.2 1,257,939 - QEN71_RS05690 0.34 +3.5 1,257,939 - QEN71_RS05690 0.34 -1.3 1,257,939 - QEN71_RS05690 0.34 +0.3 1,257,939 - QEN71_RS05690 0.34 +0.7 1,257,939 - QEN71_RS05690 0.34 +0.4 1,257,939 - QEN71_RS05690 0.34 +0.6 1,257,939 - QEN71_RS05690 0.34 -0.6 1,257,940 + QEN71_RS05690 0.34 -0.0 1,257,940 + QEN71_RS05690 0.34 -0.8 1,257,940 + QEN71_RS05690 0.34 -0.3 1,257,940 + QEN71_RS05690 0.34 +1.4 1,257,940 + QEN71_RS05690 0.34 +0.1 1,257,940 + QEN71_RS05690 0.34 +0.4 1,257,941 - QEN71_RS05690 0.34 -0.4 1,257,941 - QEN71_RS05690 0.34 +0.5 1,257,941 - QEN71_RS05690 0.34 +0.1 1,257,941 - QEN71_RS05690 0.34 +0.1 1,257,941 - QEN71_RS05690 0.34 -0.9 1,257,941 - QEN71_RS05690 0.34 +0.3 1,257,941 - QEN71_RS05690 0.34 -0.0
Or see this region's nucleotide sequence