Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS05625 and QEN71_RS05630 are separated by 79 nucleotides QEN71_RS05630 and QEN71_RS05635 are separated by 555 nucleotides
QEN71_RS05625: QEN71_RS05625 - ATP-dependent RNA helicase HrpA, at 1,240,645 to 1,244,952
_RS05625
QEN71_RS05630: QEN71_RS05630 - YadA-like family protein, at 1,245,032 to 1,246,336
_RS05630
QEN71_RS05635: QEN71_RS05635 - beta-propeller fold lactonase family protein, at 1,246,892 to 1,247,905
_RS05635
Position (kb) 1245
1246
1247 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1
2
3 at 1244.104 kb on + strand, within QEN71_RS05625 at 1244.105 kb on - strand, within QEN71_RS05625 at 1244.106 kb on - strand, within QEN71_RS05625 at 1244.314 kb on + strand, within QEN71_RS05625 at 1244.314 kb on + strand, within QEN71_RS05625 at 1244.314 kb on + strand, within QEN71_RS05625 at 1244.314 kb on + strand, within QEN71_RS05625 at 1244.314 kb on + strand, within QEN71_RS05625 at 1244.314 kb on + strand, within QEN71_RS05625 at 1244.315 kb on - strand, within QEN71_RS05625 at 1244.315 kb on - strand, within QEN71_RS05625 at 1244.406 kb on + strand, within QEN71_RS05625 at 1244.548 kb on + strand at 1244.548 kb on + strand at 1244.599 kb on + strand at 1244.599 kb on + strand at 1244.600 kb on - strand at 1244.656 kb on - strand at 1244.690 kb on - strand at 1244.785 kb on + strand at 1244.785 kb on + strand at 1244.786 kb on - strand at 1244.786 kb on - strand at 1244.923 kb on + strand at 1244.923 kb on + strand at 1244.923 kb on + strand at 1244.923 kb on + strand at 1244.923 kb on + strand at 1244.923 kb on + strand at 1244.924 kb on - strand at 1244.924 kb on - strand at 1244.924 kb on - strand at 1244.924 kb on - strand at 1244.924 kb on - strand at 1244.924 kb on - strand at 1244.924 kb on - strand at 1245.102 kb on + strand at 1245.102 kb on + strand at 1245.102 kb on + strand at 1245.102 kb on + strand at 1245.102 kb on + strand at 1245.103 kb on - strand at 1245.103 kb on - strand at 1245.103 kb on - strand at 1245.103 kb on - strand at 1245.165 kb on + strand, within QEN71_RS05630 at 1245.165 kb on + strand, within QEN71_RS05630 at 1245.165 kb on + strand, within QEN71_RS05630 at 1245.165 kb on + strand, within QEN71_RS05630 at 1245.165 kb on + strand, within QEN71_RS05630 at 1245.166 kb on - strand, within QEN71_RS05630 at 1245.166 kb on - strand, within QEN71_RS05630 at 1245.255 kb on + strand, within QEN71_RS05630 at 1245.255 kb on + strand, within QEN71_RS05630 at 1245.255 kb on + strand, within QEN71_RS05630 at 1245.255 kb on + strand, within QEN71_RS05630 at 1245.255 kb on + strand, within QEN71_RS05630 at 1245.255 kb on + strand, within QEN71_RS05630 at 1245.255 kb on + strand, within QEN71_RS05630 at 1245.255 kb on + strand, within QEN71_RS05630 at 1245.255 kb on + strand, within QEN71_RS05630 at 1245.255 kb on + strand, within QEN71_RS05630 at 1245.255 kb on + strand, within QEN71_RS05630 at 1245.256 kb on - strand, within QEN71_RS05630 at 1245.256 kb on - strand, within QEN71_RS05630 at 1245.256 kb on - strand, within QEN71_RS05630 at 1245.256 kb on - strand, within QEN71_RS05630 at 1245.256 kb on - strand, within QEN71_RS05630 at 1245.256 kb on - strand, within QEN71_RS05630 at 1245.256 kb on - strand, within QEN71_RS05630 at 1245.256 kb on - strand, within QEN71_RS05630 at 1245.256 kb on - strand, within QEN71_RS05630 at 1245.256 kb on - strand, within QEN71_RS05630 at 1245.256 kb on - strand, within QEN71_RS05630 at 1245.256 kb on - strand, within QEN71_RS05630 at 1245.294 kb on + strand, within QEN71_RS05630 at 1245.294 kb on + strand, within QEN71_RS05630 at 1245.294 kb on + strand, within QEN71_RS05630 at 1245.294 kb on + strand, within QEN71_RS05630 at 1245.295 kb on - strand, within QEN71_RS05630 at 1245.415 kb on + strand, within QEN71_RS05630 at 1245.415 kb on + strand, within QEN71_RS05630 at 1245.415 kb on + strand, within QEN71_RS05630 at 1245.416 kb on - strand, within QEN71_RS05630 at 1245.756 kb on + strand, within QEN71_RS05630 at 1245.756 kb on + strand, within QEN71_RS05630 at 1245.756 kb on + strand, within QEN71_RS05630 at 1245.756 kb on + strand, within QEN71_RS05630 at 1245.757 kb on - strand, within QEN71_RS05630 at 1245.757 kb on - strand, within QEN71_RS05630 at 1245.757 kb on - strand, within QEN71_RS05630 at 1245.798 kb on + strand, within QEN71_RS05630 at 1245.798 kb on + strand, within QEN71_RS05630 at 1245.799 kb on - strand, within QEN71_RS05630 at 1245.799 kb on - strand, within QEN71_RS05630 at 1245.799 kb on - strand, within QEN71_RS05630 at 1245.799 kb on - strand, within QEN71_RS05630 at 1245.799 kb on - strand, within QEN71_RS05630 at 1245.799 kb on - strand, within QEN71_RS05630 at 1245.799 kb on - strand, within QEN71_RS05630 at 1245.799 kb on - strand, within QEN71_RS05630 at 1245.955 kb on + strand, within QEN71_RS05630 at 1245.955 kb on + strand, within QEN71_RS05630 at 1245.955 kb on + strand, within QEN71_RS05630 at 1245.955 kb on + strand, within QEN71_RS05630 at 1245.956 kb on - strand, within QEN71_RS05630 at 1245.956 kb on - strand, within QEN71_RS05630 at 1245.956 kb on - strand, within QEN71_RS05630 at 1245.956 kb on - strand, within QEN71_RS05630 at 1245.958 kb on - strand, within QEN71_RS05630 at 1246.227 kb on + strand at 1246.227 kb on + strand at 1246.227 kb on + strand at 1246.228 kb on - strand at 1246.228 kb on - strand at 1246.228 kb on - strand at 1246.228 kb on - strand at 1246.228 kb on - strand at 1246.306 kb on + strand at 1246.307 kb on - strand at 1246.307 kb on - strand at 1246.307 kb on - strand at 1246.307 kb on - strand at 1246.307 kb on - strand at 1246.313 kb on + strand at 1246.314 kb on - strand at 1246.314 kb on - strand at 1246.314 kb on - strand at 1246.354 kb on + strand at 1246.370 kb on + strand at 1246.426 kb on - strand at 1246.426 kb on - strand at 1246.477 kb on + strand at 1246.581 kb on + strand at 1246.588 kb on + strand at 1246.588 kb on + strand at 1246.588 kb on + strand at 1246.589 kb on - strand at 1246.599 kb on + strand at 1246.602 kb on + strand at 1246.626 kb on + strand at 1246.671 kb on + strand at 1246.672 kb on - strand at 1246.757 kb on + strand at 1246.757 kb on + strand at 1246.758 kb on - strand at 1246.758 kb on - strand at 1246.859 kb on + strand at 1246.859 kb on + strand at 1246.859 kb on + strand at 1246.859 kb on + strand at 1246.859 kb on + strand at 1246.860 kb on - strand at 1246.860 kb on - strand at 1246.860 kb on - strand at 1246.860 kb on - strand at 1246.860 kb on - strand at 1246.860 kb on - strand at 1246.860 kb on - strand at 1246.860 kb on - strand at 1246.860 kb on - strand at 1246.860 kb on - strand at 1246.860 kb on - strand at 1246.860 kb on - strand at 1246.860 kb on - strand at 1246.860 kb on - strand at 1246.990 kb on + strand at 1247.062 kb on + strand, within QEN71_RS05635 at 1247.063 kb on - strand, within QEN71_RS05635 at 1247.063 kb on - strand, within QEN71_RS05635 at 1247.063 kb on - strand, within QEN71_RS05635 at 1247.213 kb on + strand, within QEN71_RS05635 at 1247.214 kb on - strand, within QEN71_RS05635 at 1247.285 kb on + strand, within QEN71_RS05635 at 1247.285 kb on + strand, within QEN71_RS05635 at 1247.285 kb on + strand, within QEN71_RS05635 at 1247.285 kb on + strand, within QEN71_RS05635 at 1247.285 kb on + strand, within QEN71_RS05635 at 1247.285 kb on + strand, within QEN71_RS05635 at 1247.285 kb on + strand, within QEN71_RS05635 at 1247.285 kb on + strand, within QEN71_RS05635 at 1247.285 kb on + strand, within QEN71_RS05635 at 1247.285 kb on + strand, within QEN71_RS05635 at 1247.285 kb on + strand, within QEN71_RS05635 at 1247.285 kb on + strand, within QEN71_RS05635 at 1247.285 kb on + strand, within QEN71_RS05635 at 1247.285 kb on + strand, within QEN71_RS05635 at 1247.285 kb on + strand, within QEN71_RS05635 at 1247.285 kb on + strand, within QEN71_RS05635 at 1247.285 kb on + strand, within QEN71_RS05635 at 1247.285 kb on + strand, within QEN71_RS05635 at 1247.285 kb on + strand, within QEN71_RS05635 at 1247.286 kb on - strand, within QEN71_RS05635 at 1247.286 kb on - strand, within QEN71_RS05635 at 1247.286 kb on - strand, within QEN71_RS05635 at 1247.286 kb on - strand, within QEN71_RS05635 at 1247.286 kb on - strand, within QEN71_RS05635 at 1247.286 kb on - strand, within QEN71_RS05635 at 1247.286 kb on - strand, within QEN71_RS05635 at 1247.286 kb on - strand, within QEN71_RS05635 at 1247.286 kb on - strand, within QEN71_RS05635 at 1247.286 kb on - strand, within QEN71_RS05635 at 1247.286 kb on - strand, within QEN71_RS05635 at 1247.286 kb on - strand, within QEN71_RS05635 at 1247.286 kb on - strand, within QEN71_RS05635 at 1247.286 kb on - strand, within QEN71_RS05635 at 1247.286 kb on - strand, within QEN71_RS05635 at 1247.286 kb on - strand, within QEN71_RS05635 at 1247.286 kb on - strand, within QEN71_RS05635 at 1247.286 kb on - strand, within QEN71_RS05635 at 1247.286 kb on - strand, within QEN71_RS05635 at 1247.291 kb on + strand, within QEN71_RS05635 at 1247.291 kb on + strand, within QEN71_RS05635 at 1247.292 kb on - strand, within QEN71_RS05635
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 1,244,104 + QEN71_RS05625 0.80 -0.8 1,244,105 - QEN71_RS05625 0.80 +0.1 1,244,106 - QEN71_RS05625 0.80 -1.6 1,244,314 + QEN71_RS05625 0.85 -0.6 1,244,314 + QEN71_RS05625 0.85 -0.4 1,244,314 + QEN71_RS05625 0.85 -1.7 1,244,314 + QEN71_RS05625 0.85 +1.5 1,244,314 + QEN71_RS05625 0.85 +1.0 1,244,314 + QEN71_RS05625 0.85 -0.3 1,244,315 - QEN71_RS05625 0.85 +0.2 1,244,315 - QEN71_RS05625 0.85 -2.5 1,244,406 + QEN71_RS05625 0.87 +0.2 1,244,548 + -0.8 1,244,548 + -2.3 1,244,599 + -0.8 1,244,599 + +1.6 1,244,600 - -0.5 1,244,656 - +0.7 1,244,690 - +0.5 1,244,785 + -1.2 1,244,785 + -0.5 1,244,786 - +0.6 1,244,786 - +0.3 1,244,923 + -0.1 1,244,923 + +1.5 1,244,923 + -2.2 1,244,923 + -0.1 1,244,923 + +0.1 1,244,923 + +1.1 1,244,924 - +0.1 1,244,924 - -0.5 1,244,924 - -0.3 1,244,924 - -0.4 1,244,924 - +1.2 1,244,924 - +0.8 1,244,924 - -1.7 1,245,102 + +0.8 1,245,102 + +1.2 1,245,102 + +0.7 1,245,102 + +0.1 1,245,102 + -2.1 1,245,103 - -1.0 1,245,103 - +0.3 1,245,103 - +0.3 1,245,103 - +0.7 1,245,165 + QEN71_RS05630 0.10 -1.2 1,245,165 + QEN71_RS05630 0.10 -0.9 1,245,165 + QEN71_RS05630 0.10 -0.4 1,245,165 + QEN71_RS05630 0.10 -0.3 1,245,165 + QEN71_RS05630 0.10 +1.5 1,245,166 - QEN71_RS05630 0.10 +0.3 1,245,166 - QEN71_RS05630 0.10 -1.2 1,245,255 + QEN71_RS05630 0.17 +0.4 1,245,255 + QEN71_RS05630 0.17 +0.4 1,245,255 + QEN71_RS05630 0.17 +0.3 1,245,255 + QEN71_RS05630 0.17 +0.6 1,245,255 + QEN71_RS05630 0.17 +3.2 1,245,255 + QEN71_RS05630 0.17 -0.2 1,245,255 + QEN71_RS05630 0.17 +0.5 1,245,255 + QEN71_RS05630 0.17 +0.6 1,245,255 + QEN71_RS05630 0.17 +0.7 1,245,255 + QEN71_RS05630 0.17 -0.0 1,245,255 + QEN71_RS05630 0.17 -0.1 1,245,256 - QEN71_RS05630 0.17 -0.4 1,245,256 - QEN71_RS05630 0.17 -0.4 1,245,256 - QEN71_RS05630 0.17 -0.4 1,245,256 - QEN71_RS05630 0.17 -0.5 1,245,256 - QEN71_RS05630 0.17 +0.6 1,245,256 - QEN71_RS05630 0.17 -0.2 1,245,256 - QEN71_RS05630 0.17 -0.2 1,245,256 - QEN71_RS05630 0.17 -0.6 1,245,256 - QEN71_RS05630 0.17 -0.6 1,245,256 - QEN71_RS05630 0.17 -0.0 1,245,256 - QEN71_RS05630 0.17 +1.2 1,245,256 - QEN71_RS05630 0.17 -0.2 1,245,294 + QEN71_RS05630 0.20 -0.1 1,245,294 + QEN71_RS05630 0.20 +0.1 1,245,294 + QEN71_RS05630 0.20 -7.4 1,245,294 + QEN71_RS05630 0.20 -0.5 1,245,295 - QEN71_RS05630 0.20 -0.3 1,245,415 + QEN71_RS05630 0.29 -0.0 1,245,415 + QEN71_RS05630 0.29 +0.2 1,245,415 + QEN71_RS05630 0.29 -1.3 1,245,416 - QEN71_RS05630 0.29 +0.6 1,245,756 + QEN71_RS05630 0.55 -0.3 1,245,756 + QEN71_RS05630 0.55 -0.2 1,245,756 + QEN71_RS05630 0.55 +0.2 1,245,756 + QEN71_RS05630 0.55 -0.4 1,245,757 - QEN71_RS05630 0.56 +0.5 1,245,757 - QEN71_RS05630 0.56 +0.2 1,245,757 - QEN71_RS05630 0.56 -0.1 1,245,798 + QEN71_RS05630 0.59 +0.1 1,245,798 + QEN71_RS05630 0.59 -0.7 1,245,799 - QEN71_RS05630 0.59 +0.7 1,245,799 - QEN71_RS05630 0.59 -0.2 1,245,799 - QEN71_RS05630 0.59 +0.0 1,245,799 - QEN71_RS05630 0.59 -0.8 1,245,799 - QEN71_RS05630 0.59 +2.0 1,245,799 - QEN71_RS05630 0.59 -0.6 1,245,799 - QEN71_RS05630 0.59 +1.8 1,245,799 - QEN71_RS05630 0.59 +0.6 1,245,955 + QEN71_RS05630 0.71 -0.3 1,245,955 + QEN71_RS05630 0.71 +0.5 1,245,955 + QEN71_RS05630 0.71 -0.5 1,245,955 + QEN71_RS05630 0.71 +1.0 1,245,956 - QEN71_RS05630 0.71 +0.6 1,245,956 - QEN71_RS05630 0.71 +0.5 1,245,956 - QEN71_RS05630 0.71 +1.0 1,245,956 - QEN71_RS05630 0.71 +0.8 1,245,958 - QEN71_RS05630 0.71 +0.4 1,246,227 + +0.6 1,246,227 + -1.5 1,246,227 + -0.4 1,246,228 - -0.8 1,246,228 - +1.1 1,246,228 - -1.6 1,246,228 - +2.4 1,246,228 - +0.1 1,246,306 + -1.0 1,246,307 - -1.5 1,246,307 - -1.1 1,246,307 - +0.2 1,246,307 - -1.2 1,246,307 - +1.5 1,246,313 + -0.0 1,246,314 - +1.1 1,246,314 - +0.4 1,246,314 - -0.3 1,246,354 + -1.0 1,246,370 + +0.6 1,246,426 - -1.0 1,246,426 - -2.1 1,246,477 + -0.6 1,246,581 + -0.3 1,246,588 + +1.0 1,246,588 + +0.0 1,246,588 + +0.5 1,246,589 - +0.7 1,246,599 + +0.3 1,246,602 + +0.4 1,246,626 + +0.5 1,246,671 + +0.1 1,246,672 - +0.1 1,246,757 + -0.4 1,246,757 + -0.7 1,246,758 - -0.6 1,246,758 - +0.4 1,246,859 + -2.0 1,246,859 + -1.6 1,246,859 + -0.1 1,246,859 + -0.4 1,246,859 + +0.1 1,246,860 - +2.0 1,246,860 - -0.0 1,246,860 - -0.4 1,246,860 - +0.1 1,246,860 - +0.7 1,246,860 - -0.6 1,246,860 - -0.2 1,246,860 - -0.3 1,246,860 - -0.3 1,246,860 - +0.2 1,246,860 - -0.3 1,246,860 - -1.0 1,246,860 - +0.0 1,246,860 - -0.2 1,246,990 + -0.7 1,247,062 + QEN71_RS05635 0.17 -0.5 1,247,063 - QEN71_RS05635 0.17 +0.8 1,247,063 - QEN71_RS05635 0.17 -1.8 1,247,063 - QEN71_RS05635 0.17 +0.9 1,247,213 + QEN71_RS05635 0.32 +0.3 1,247,214 - QEN71_RS05635 0.32 +0.5 1,247,285 + QEN71_RS05635 0.39 +1.0 1,247,285 + QEN71_RS05635 0.39 +0.3 1,247,285 + QEN71_RS05635 0.39 +1.6 1,247,285 + QEN71_RS05635 0.39 +0.6 1,247,285 + QEN71_RS05635 0.39 +1.8 1,247,285 + QEN71_RS05635 0.39 +0.1 1,247,285 + QEN71_RS05635 0.39 +0.3 1,247,285 + QEN71_RS05635 0.39 -0.0 1,247,285 + QEN71_RS05635 0.39 -0.6 1,247,285 + QEN71_RS05635 0.39 -0.0 1,247,285 + QEN71_RS05635 0.39 +2.0 1,247,285 + QEN71_RS05635 0.39 -1.7 1,247,285 + QEN71_RS05635 0.39 +3.0 1,247,285 + QEN71_RS05635 0.39 -0.0 1,247,285 + QEN71_RS05635 0.39 -0.6 1,247,285 + QEN71_RS05635 0.39 +0.4 1,247,285 + QEN71_RS05635 0.39 -0.6 1,247,285 + QEN71_RS05635 0.39 +1.1 1,247,285 + QEN71_RS05635 0.39 +0.1 1,247,286 - QEN71_RS05635 0.39 -0.2 1,247,286 - QEN71_RS05635 0.39 +0.2 1,247,286 - QEN71_RS05635 0.39 -0.9 1,247,286 - QEN71_RS05635 0.39 +0.8 1,247,286 - QEN71_RS05635 0.39 -0.4 1,247,286 - QEN71_RS05635 0.39 -0.2 1,247,286 - QEN71_RS05635 0.39 -0.0 1,247,286 - QEN71_RS05635 0.39 -0.2 1,247,286 - QEN71_RS05635 0.39 -0.7 1,247,286 - QEN71_RS05635 0.39 +1.2 1,247,286 - QEN71_RS05635 0.39 -1.9 1,247,286 - QEN71_RS05635 0.39 +0.4 1,247,286 - QEN71_RS05635 0.39 +0.4 1,247,286 - QEN71_RS05635 0.39 -0.4 1,247,286 - QEN71_RS05635 0.39 +0.9 1,247,286 - QEN71_RS05635 0.39 -0.4 1,247,286 - QEN71_RS05635 0.39 +0.6 1,247,286 - QEN71_RS05635 0.39 +0.7 1,247,286 - QEN71_RS05635 0.39 +0.2 1,247,291 + QEN71_RS05635 0.39 +1.1 1,247,291 + QEN71_RS05635 0.39 +0.6 1,247,292 - QEN71_RS05635 0.39 -1.4
Or see this region's nucleotide sequence