Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS03695 and QEN71_RS03700 are separated by 408 nucleotides QEN71_RS03700 and QEN71_RS03705 are separated by 324 nucleotides QEN71_RS03705 and QEN71_RS03710 overlap by 4 nucleotides QEN71_RS03710 and QEN71_RS03715 are separated by 186 nucleotides QEN71_RS03715 and QEN71_RS03720 overlap by 16 nucleotides
QEN71_RS03695: QEN71_RS03695 - hypothetical protein, at 821,323 to 821,565
_RS03695
QEN71_RS03700: QEN71_RS03700 - cold-shock protein, at 821,974 to 822,177
_RS03700
QEN71_RS03705: QEN71_RS03705 - exonuclease domain-containing protein, at 822,502 to 823,680
_RS03705
QEN71_RS03710: QEN71_RS03710 - chorismate mutase, at 823,677 to 824,273
_RS03710
QEN71_RS03715: QEN71_RS03715 - hypothetical protein, at 824,460 to 824,624
_RS03715
QEN71_RS03720: QEN71_RS03720 - hypothetical protein, at 824,609 to 824,758
_RS03720
Position (kb) 822
823
824 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 821.621 kb on + strand at 821.621 kb on + strand at 821.621 kb on + strand at 821.622 kb on - strand at 821.622 kb on - strand at 821.622 kb on - strand at 821.641 kb on + strand at 821.641 kb on + strand at 821.641 kb on + strand at 821.641 kb on + strand at 821.641 kb on + strand at 821.641 kb on + strand at 821.642 kb on - strand at 821.642 kb on - strand at 821.642 kb on - strand at 821.642 kb on - strand at 821.642 kb on - strand at 821.642 kb on - strand at 821.642 kb on - strand at 821.642 kb on - strand at 821.661 kb on - strand at 821.696 kb on + strand at 821.696 kb on + strand at 821.696 kb on + strand at 821.696 kb on + strand at 821.696 kb on + strand at 821.696 kb on + strand at 821.696 kb on + strand at 821.696 kb on + strand at 821.697 kb on - strand at 821.697 kb on - strand at 821.697 kb on - strand at 821.697 kb on - strand at 821.697 kb on - strand at 821.715 kb on + strand at 821.716 kb on - strand at 821.747 kb on + strand at 821.747 kb on + strand at 821.748 kb on - strand at 821.748 kb on - strand at 821.748 kb on - strand at 821.748 kb on - strand at 821.751 kb on - strand at 821.771 kb on + strand at 821.771 kb on + strand at 821.772 kb on - strand at 821.839 kb on + strand at 821.840 kb on - strand at 821.841 kb on + strand at 821.841 kb on + strand at 821.841 kb on + strand at 821.841 kb on + strand at 821.841 kb on + strand at 821.841 kb on + strand at 821.841 kb on + strand at 821.842 kb on - strand at 821.842 kb on - strand at 821.842 kb on - strand at 821.842 kb on - strand at 821.875 kb on + strand at 821.875 kb on + strand at 821.875 kb on + strand at 821.876 kb on - strand at 821.876 kb on - strand at 821.878 kb on + strand at 821.892 kb on + strand at 821.893 kb on - strand at 821.895 kb on - strand at 821.950 kb on + strand at 821.950 kb on + strand at 821.951 kb on - strand at 822.009 kb on + strand, within QEN71_RS03700 at 822.009 kb on + strand, within QEN71_RS03700 at 822.009 kb on + strand, within QEN71_RS03700 at 822.010 kb on - strand, within QEN71_RS03700 at 822.175 kb on + strand at 822.175 kb on + strand at 822.175 kb on + strand at 822.176 kb on - strand at 822.176 kb on - strand at 822.206 kb on + strand at 822.206 kb on + strand at 822.207 kb on - strand at 822.207 kb on - strand at 822.207 kb on - strand at 822.254 kb on + strand at 822.276 kb on + strand at 822.276 kb on + strand at 822.277 kb on - strand at 822.277 kb on - strand at 822.277 kb on - strand at 822.278 kb on + strand at 822.278 kb on + strand at 822.278 kb on + strand at 822.279 kb on - strand at 822.329 kb on + strand at 822.330 kb on - strand at 822.332 kb on + strand at 822.333 kb on - strand at 822.333 kb on - strand at 822.360 kb on + strand at 822.361 kb on - strand at 822.361 kb on - strand at 822.364 kb on + strand at 822.372 kb on + strand at 822.372 kb on + strand at 822.372 kb on + strand at 822.373 kb on - strand at 822.373 kb on - strand at 822.381 kb on + strand at 822.381 kb on + strand at 822.381 kb on + strand at 822.466 kb on + strand at 822.466 kb on + strand at 822.466 kb on + strand at 822.466 kb on + strand at 822.466 kb on + strand at 822.466 kb on + strand at 822.466 kb on + strand at 822.466 kb on + strand at 822.466 kb on + strand at 822.466 kb on + strand at 822.466 kb on + strand at 822.466 kb on + strand at 822.466 kb on + strand at 822.467 kb on - strand at 822.467 kb on - strand at 822.467 kb on - strand at 822.467 kb on - strand at 822.467 kb on - strand at 822.467 kb on - strand at 822.467 kb on - strand at 822.467 kb on - strand at 822.873 kb on + strand, within QEN71_RS03705 at 822.873 kb on + strand, within QEN71_RS03705 at 822.873 kb on + strand, within QEN71_RS03705 at 822.873 kb on + strand, within QEN71_RS03705 at 822.874 kb on - strand, within QEN71_RS03705 at 822.874 kb on - strand, within QEN71_RS03705 at 822.874 kb on - strand, within QEN71_RS03705 at 822.896 kb on + strand, within QEN71_RS03705 at 822.896 kb on + strand, within QEN71_RS03705 at 823.003 kb on + strand, within QEN71_RS03705 at 823.003 kb on + strand, within QEN71_RS03705 at 823.003 kb on + strand, within QEN71_RS03705 at 823.004 kb on - strand, within QEN71_RS03705 at 823.138 kb on + strand, within QEN71_RS03705 at 823.138 kb on + strand, within QEN71_RS03705 at 823.138 kb on + strand, within QEN71_RS03705 at 823.138 kb on + strand, within QEN71_RS03705 at 823.138 kb on + strand, within QEN71_RS03705 at 823.138 kb on + strand, within QEN71_RS03705 at 823.138 kb on + strand, within QEN71_RS03705 at 823.138 kb on + strand, within QEN71_RS03705 at 823.138 kb on + strand, within QEN71_RS03705 at 823.139 kb on - strand, within QEN71_RS03705 at 823.139 kb on - strand, within QEN71_RS03705 at 823.139 kb on - strand, within QEN71_RS03705 at 823.139 kb on - strand, within QEN71_RS03705 at 823.139 kb on - strand, within QEN71_RS03705 at 823.139 kb on - strand, within QEN71_RS03705 at 823.139 kb on - strand, within QEN71_RS03705 at 823.139 kb on - strand, within QEN71_RS03705 at 823.147 kb on + strand, within QEN71_RS03705 at 823.147 kb on + strand, within QEN71_RS03705 at 823.147 kb on + strand, within QEN71_RS03705 at 823.147 kb on + strand, within QEN71_RS03705 at 823.147 kb on + strand, within QEN71_RS03705 at 823.148 kb on - strand, within QEN71_RS03705 at 823.148 kb on - strand, within QEN71_RS03705 at 823.171 kb on + strand, within QEN71_RS03705 at 823.171 kb on + strand, within QEN71_RS03705 at 823.171 kb on + strand, within QEN71_RS03705 at 823.171 kb on + strand, within QEN71_RS03705 at 823.171 kb on + strand, within QEN71_RS03705 at 823.171 kb on + strand, within QEN71_RS03705 at 823.171 kb on + strand, within QEN71_RS03705 at 823.172 kb on - strand, within QEN71_RS03705 at 823.172 kb on - strand, within QEN71_RS03705 at 823.172 kb on - strand, within QEN71_RS03705 at 823.172 kb on - strand, within QEN71_RS03705 at 823.172 kb on - strand, within QEN71_RS03705 at 823.175 kb on + strand, within QEN71_RS03705 at 823.175 kb on + strand, within QEN71_RS03705 at 823.175 kb on + strand, within QEN71_RS03705 at 823.175 kb on + strand, within QEN71_RS03705 at 823.175 kb on + strand, within QEN71_RS03705 at 823.175 kb on + strand, within QEN71_RS03705 at 823.175 kb on + strand, within QEN71_RS03705 at 823.175 kb on + strand, within QEN71_RS03705 at 823.175 kb on + strand, within QEN71_RS03705 at 823.175 kb on + strand, within QEN71_RS03705 at 823.175 kb on + strand, within QEN71_RS03705 at 823.176 kb on - strand, within QEN71_RS03705 at 823.176 kb on - strand, within QEN71_RS03705 at 823.176 kb on - strand, within QEN71_RS03705 at 823.176 kb on - strand, within QEN71_RS03705 at 823.176 kb on - strand, within QEN71_RS03705 at 823.176 kb on - strand, within QEN71_RS03705 at 823.176 kb on - strand, within QEN71_RS03705 at 823.405 kb on + strand, within QEN71_RS03705 at 823.405 kb on + strand, within QEN71_RS03705 at 823.406 kb on - strand, within QEN71_RS03705 at 823.406 kb on - strand, within QEN71_RS03705 at 823.406 kb on - strand, within QEN71_RS03705 at 823.406 kb on - strand, within QEN71_RS03705 at 823.406 kb on - strand, within QEN71_RS03705 at 823.437 kb on + strand, within QEN71_RS03705 at 823.438 kb on - strand, within QEN71_RS03705 at 823.438 kb on - strand, within QEN71_RS03705 at 823.438 kb on - strand, within QEN71_RS03705 at 823.438 kb on - strand, within QEN71_RS03705 at 823.438 kb on - strand, within QEN71_RS03705 at 823.483 kb on + strand, within QEN71_RS03705 at 823.756 kb on + strand, within QEN71_RS03710 at 823.756 kb on + strand, within QEN71_RS03710 at 823.756 kb on + strand, within QEN71_RS03710 at 824.078 kb on + strand, within QEN71_RS03710 at 824.079 kb on - strand, within QEN71_RS03710 at 824.110 kb on + strand, within QEN71_RS03710 at 824.110 kb on + strand, within QEN71_RS03710 at 824.110 kb on + strand, within QEN71_RS03710 at 824.110 kb on + strand, within QEN71_RS03710 at 824.110 kb on + strand, within QEN71_RS03710 at 824.110 kb on + strand, within QEN71_RS03710 at 824.110 kb on + strand, within QEN71_RS03710 at 824.111 kb on - strand, within QEN71_RS03710 at 824.111 kb on - strand, within QEN71_RS03710 at 824.111 kb on - strand, within QEN71_RS03710 at 824.296 kb on + strand at 824.296 kb on + strand at 824.296 kb on + strand at 824.296 kb on + strand at 824.297 kb on - strand at 824.297 kb on - strand at 824.340 kb on - strand at 824.424 kb on + strand at 824.539 kb on - strand, within QEN71_RS03715 at 824.539 kb on - strand, within QEN71_RS03715 at 824.539 kb on - strand, within QEN71_RS03715 at 824.610 kb on + strand at 824.610 kb on + strand at 824.610 kb on + strand at 824.610 kb on + strand at 824.610 kb on + strand at 824.611 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 821,621 + +0.5 821,621 + +2.8 821,621 + -0.7 821,622 - +0.5 821,622 - -0.5 821,622 - +1.2 821,641 + +1.1 821,641 + -0.6 821,641 + +0.6 821,641 + +0.6 821,641 + -2.8 821,641 + -0.3 821,642 - -0.5 821,642 - +1.7 821,642 - +0.1 821,642 - +2.0 821,642 - +0.3 821,642 - +0.2 821,642 - -0.4 821,642 - -0.3 821,661 - +0.1 821,696 + -0.2 821,696 + +1.0 821,696 + -1.4 821,696 + -0.1 821,696 + -0.6 821,696 + -0.4 821,696 + +0.7 821,696 + -1.6 821,697 - -0.4 821,697 - -1.3 821,697 - +0.1 821,697 - -0.1 821,697 - -0.6 821,715 + -0.7 821,716 - +0.7 821,747 + +0.1 821,747 + +0.9 821,748 - -1.1 821,748 - +0.1 821,748 - +0.4 821,748 - -0.5 821,751 - -0.6 821,771 + +0.6 821,771 + -0.1 821,772 - -1.0 821,839 + +1.5 821,840 - +0.8 821,841 + +0.9 821,841 + +0.5 821,841 + +1.7 821,841 + -1.4 821,841 + +0.7 821,841 + -1.7 821,841 + +0.0 821,842 - -0.4 821,842 - -0.2 821,842 - -0.2 821,842 - -1.5 821,875 + -0.2 821,875 + +0.1 821,875 + -0.2 821,876 - -0.9 821,876 - -1.8 821,878 + -1.3 821,892 + -2.1 821,893 - -0.6 821,895 - +0.6 821,950 + +0.1 821,950 + -0.2 821,951 - +2.3 822,009 + QEN71_RS03700 0.17 -0.1 822,009 + QEN71_RS03700 0.17 -0.7 822,009 + QEN71_RS03700 0.17 -0.1 822,010 - QEN71_RS03700 0.18 -1.8 822,175 + -0.5 822,175 + -1.3 822,175 + +0.2 822,176 - -0.1 822,176 - -0.6 822,206 + +0.9 822,206 + +0.1 822,207 - -1.3 822,207 - -0.5 822,207 - +0.4 822,254 + +0.7 822,276 + -1.6 822,276 + +0.6 822,277 - -1.7 822,277 - -1.4 822,277 - -0.3 822,278 + -0.4 822,278 + -0.7 822,278 + -1.1 822,279 - +0.5 822,329 + -0.3 822,330 - +0.1 822,332 + -0.6 822,333 - +0.0 822,333 - -0.2 822,360 + +0.3 822,361 - +1.1 822,361 - -1.4 822,364 + -2.9 822,372 + -0.6 822,372 + -2.0 822,372 + -0.8 822,373 - +1.1 822,373 - -0.8 822,381 + -0.2 822,381 + -0.0 822,381 + -0.6 822,466 + -0.7 822,466 + -2.2 822,466 + -1.4 822,466 + -0.4 822,466 + -0.3 822,466 + +2.7 822,466 + +0.9 822,466 + +0.9 822,466 + -1.4 822,466 + -0.6 822,466 + -0.3 822,466 + -0.4 822,466 + -0.0 822,467 - -0.3 822,467 - -1.2 822,467 - -0.7 822,467 - -0.5 822,467 - +0.9 822,467 - -1.1 822,467 - +0.5 822,467 - +0.8 822,873 + QEN71_RS03705 0.31 +0.4 822,873 + QEN71_RS03705 0.31 +0.8 822,873 + QEN71_RS03705 0.31 -0.9 822,873 + QEN71_RS03705 0.31 +0.0 822,874 - QEN71_RS03705 0.32 -1.3 822,874 - QEN71_RS03705 0.32 -0.5 822,874 - QEN71_RS03705 0.32 -0.7 822,896 + QEN71_RS03705 0.33 +1.4 822,896 + QEN71_RS03705 0.33 -0.6 823,003 + QEN71_RS03705 0.42 -0.4 823,003 + QEN71_RS03705 0.42 -2.4 823,003 + QEN71_RS03705 0.42 -0.6 823,004 - QEN71_RS03705 0.43 +0.6 823,138 + QEN71_RS03705 0.54 -1.9 823,138 + QEN71_RS03705 0.54 -0.7 823,138 + QEN71_RS03705 0.54 -0.5 823,138 + QEN71_RS03705 0.54 -0.1 823,138 + QEN71_RS03705 0.54 -0.1 823,138 + QEN71_RS03705 0.54 +0.3 823,138 + QEN71_RS03705 0.54 -2.2 823,138 + QEN71_RS03705 0.54 -0.4 823,138 + QEN71_RS03705 0.54 +0.4 823,139 - QEN71_RS03705 0.54 -0.7 823,139 - QEN71_RS03705 0.54 +0.9 823,139 - QEN71_RS03705 0.54 -0.1 823,139 - QEN71_RS03705 0.54 +0.9 823,139 - QEN71_RS03705 0.54 +0.4 823,139 - QEN71_RS03705 0.54 +1.1 823,139 - QEN71_RS03705 0.54 -1.9 823,139 - QEN71_RS03705 0.54 +0.4 823,147 + QEN71_RS03705 0.55 -0.1 823,147 + QEN71_RS03705 0.55 -1.9 823,147 + QEN71_RS03705 0.55 +0.9 823,147 + QEN71_RS03705 0.55 +0.7 823,147 + QEN71_RS03705 0.55 +0.3 823,148 - QEN71_RS03705 0.55 -0.2 823,148 - QEN71_RS03705 0.55 +0.1 823,171 + QEN71_RS03705 0.57 +0.4 823,171 + QEN71_RS03705 0.57 -0.7 823,171 + QEN71_RS03705 0.57 -0.9 823,171 + QEN71_RS03705 0.57 -0.4 823,171 + QEN71_RS03705 0.57 +0.9 823,171 + QEN71_RS03705 0.57 -0.7 823,171 + QEN71_RS03705 0.57 -2.7 823,172 - QEN71_RS03705 0.57 -0.6 823,172 - QEN71_RS03705 0.57 -0.3 823,172 - QEN71_RS03705 0.57 -0.1 823,172 - QEN71_RS03705 0.57 -0.3 823,172 - QEN71_RS03705 0.57 +0.5 823,175 + QEN71_RS03705 0.57 -0.2 823,175 + QEN71_RS03705 0.57 -1.3 823,175 + QEN71_RS03705 0.57 -0.4 823,175 + QEN71_RS03705 0.57 +0.5 823,175 + QEN71_RS03705 0.57 +0.7 823,175 + QEN71_RS03705 0.57 -0.9 823,175 + QEN71_RS03705 0.57 +0.9 823,175 + QEN71_RS03705 0.57 +1.3 823,175 + QEN71_RS03705 0.57 -1.6 823,175 + QEN71_RS03705 0.57 -1.3 823,175 + QEN71_RS03705 0.57 -0.2 823,176 - QEN71_RS03705 0.57 -0.4 823,176 - QEN71_RS03705 0.57 +0.1 823,176 - QEN71_RS03705 0.57 -0.5 823,176 - QEN71_RS03705 0.57 -0.6 823,176 - QEN71_RS03705 0.57 +0.2 823,176 - QEN71_RS03705 0.57 +0.5 823,176 - QEN71_RS03705 0.57 +0.2 823,405 + QEN71_RS03705 0.77 -0.4 823,405 + QEN71_RS03705 0.77 -0.5 823,406 - QEN71_RS03705 0.77 +0.7 823,406 - QEN71_RS03705 0.77 +0.4 823,406 - QEN71_RS03705 0.77 -0.1 823,406 - QEN71_RS03705 0.77 -1.3 823,406 - QEN71_RS03705 0.77 +1.1 823,437 + QEN71_RS03705 0.79 +0.4 823,438 - QEN71_RS03705 0.79 +1.0 823,438 - QEN71_RS03705 0.79 +0.6 823,438 - QEN71_RS03705 0.79 -1.6 823,438 - QEN71_RS03705 0.79 +0.3 823,438 - QEN71_RS03705 0.79 +0.5 823,483 + QEN71_RS03705 0.83 -0.9 823,756 + QEN71_RS03710 0.13 +0.5 823,756 + QEN71_RS03710 0.13 -1.5 823,756 + QEN71_RS03710 0.13 -0.4 824,078 + QEN71_RS03710 0.67 -0.1 824,079 - QEN71_RS03710 0.67 +1.5 824,110 + QEN71_RS03710 0.73 -0.5 824,110 + QEN71_RS03710 0.73 +1.0 824,110 + QEN71_RS03710 0.73 -0.2 824,110 + QEN71_RS03710 0.73 -0.0 824,110 + QEN71_RS03710 0.73 +1.1 824,110 + QEN71_RS03710 0.73 +0.9 824,110 + QEN71_RS03710 0.73 -1.3 824,111 - QEN71_RS03710 0.73 +0.2 824,111 - QEN71_RS03710 0.73 +0.4 824,111 - QEN71_RS03710 0.73 -1.1 824,296 + -0.1 824,296 + -1.9 824,296 + +1.0 824,296 + +1.6 824,297 - -0.4 824,297 - +0.2 824,340 - +0.9 824,424 + +0.7 824,539 - QEN71_RS03715 0.48 -0.4 824,539 - QEN71_RS03715 0.48 +0.2 824,539 - QEN71_RS03715 0.48 -0.5 824,610 + -1.0 824,610 + -0.4 824,610 + +5.4 824,610 + -0.1 824,610 + -0.8 824,611 - -0.4
Or see this region's nucleotide sequence