Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS03405 and QEN71_RS03410 are separated by 13 nucleotides QEN71_RS03410 and QEN71_RS03415 are separated by 309 nucleotides
QEN71_RS03405: QEN71_RS03405 - tetratricopeptide repeat-containing glycosyltransferase family protein, at 757,847 to 759,478
_RS03405
QEN71_RS03410: QEN71_RS03410 - putative hydroxymethylpyrimidine transporter CytX, at 759,492 to 760,808
_RS03410
QEN71_RS03415: QEN71_RS03415 - replication-associated recombination protein A, at 761,118 to 762,428
_RS03415
Position (kb) 759
760
761 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 758.708 kb on + strand, within QEN71_RS03405 at 758.730 kb on + strand, within QEN71_RS03405 at 758.730 kb on + strand, within QEN71_RS03405 at 758.731 kb on - strand, within QEN71_RS03405 at 758.849 kb on + strand, within QEN71_RS03405 at 758.849 kb on + strand, within QEN71_RS03405 at 758.849 kb on + strand, within QEN71_RS03405 at 758.849 kb on + strand, within QEN71_RS03405 at 758.850 kb on - strand, within QEN71_RS03405 at 758.850 kb on - strand, within QEN71_RS03405 at 758.850 kb on - strand, within QEN71_RS03405 at 758.850 kb on - strand, within QEN71_RS03405 at 758.850 kb on - strand, within QEN71_RS03405 at 758.850 kb on - strand, within QEN71_RS03405 at 758.850 kb on - strand, within QEN71_RS03405 at 758.850 kb on - strand, within QEN71_RS03405 at 758.924 kb on + strand, within QEN71_RS03405 at 758.924 kb on + strand, within QEN71_RS03405 at 758.945 kb on + strand, within QEN71_RS03405 at 758.946 kb on - strand, within QEN71_RS03405 at 758.991 kb on + strand, within QEN71_RS03405 at 758.991 kb on + strand, within QEN71_RS03405 at 758.991 kb on + strand, within QEN71_RS03405 at 758.991 kb on + strand, within QEN71_RS03405 at 758.991 kb on + strand, within QEN71_RS03405 at 758.991 kb on + strand, within QEN71_RS03405 at 758.992 kb on - strand, within QEN71_RS03405 at 758.992 kb on - strand, within QEN71_RS03405 at 759.077 kb on + strand, within QEN71_RS03405 at 759.077 kb on + strand, within QEN71_RS03405 at 759.078 kb on - strand, within QEN71_RS03405 at 759.237 kb on + strand, within QEN71_RS03405 at 759.238 kb on - strand, within QEN71_RS03405 at 759.238 kb on - strand, within QEN71_RS03405 at 759.238 kb on - strand, within QEN71_RS03405 at 759.238 kb on - strand, within QEN71_RS03405 at 759.238 kb on - strand, within QEN71_RS03405 at 759.238 kb on - strand, within QEN71_RS03405 at 759.238 kb on - strand, within QEN71_RS03405 at 759.238 kb on - strand, within QEN71_RS03405 at 759.238 kb on - strand, within QEN71_RS03405 at 759.238 kb on - strand, within QEN71_RS03405 at 759.259 kb on + strand, within QEN71_RS03405 at 759.259 kb on + strand, within QEN71_RS03405 at 759.259 kb on + strand, within QEN71_RS03405 at 759.260 kb on - strand, within QEN71_RS03405 at 759.260 kb on - strand, within QEN71_RS03405 at 759.260 kb on - strand, within QEN71_RS03405 at 759.260 kb on - strand, within QEN71_RS03405 at 759.260 kb on - strand, within QEN71_RS03405 at 759.260 kb on - strand, within QEN71_RS03405 at 759.260 kb on - strand, within QEN71_RS03405 at 759.260 kb on - strand, within QEN71_RS03405 at 759.317 kb on + strand at 759.499 kb on + strand at 759.499 kb on + strand at 759.500 kb on - strand at 759.500 kb on - strand at 759.500 kb on - strand at 759.500 kb on - strand at 759.500 kb on - strand at 759.500 kb on - strand at 759.500 kb on - strand at 759.500 kb on - strand at 759.532 kb on + strand at 759.532 kb on + strand at 759.533 kb on - strand at 759.533 kb on - strand at 759.533 kb on - strand at 759.533 kb on - strand at 759.533 kb on - strand at 759.605 kb on - strand at 759.681 kb on - strand, within QEN71_RS03410 at 759.793 kb on + strand, within QEN71_RS03410 at 759.793 kb on + strand, within QEN71_RS03410 at 759.793 kb on + strand, within QEN71_RS03410 at 759.793 kb on + strand, within QEN71_RS03410 at 759.794 kb on - strand, within QEN71_RS03410 at 760.028 kb on - strand, within QEN71_RS03410 at 760.028 kb on - strand, within QEN71_RS03410 at 760.045 kb on + strand, within QEN71_RS03410 at 760.045 kb on + strand, within QEN71_RS03410 at 760.046 kb on - strand, within QEN71_RS03410 at 760.046 kb on - strand, within QEN71_RS03410 at 760.055 kb on + strand, within QEN71_RS03410 at 760.056 kb on - strand, within QEN71_RS03410 at 760.056 kb on - strand, within QEN71_RS03410 at 760.123 kb on + strand, within QEN71_RS03410 at 760.123 kb on + strand, within QEN71_RS03410 at 760.124 kb on - strand, within QEN71_RS03410 at 760.252 kb on + strand, within QEN71_RS03410 at 760.252 kb on + strand, within QEN71_RS03410 at 760.253 kb on - strand, within QEN71_RS03410 at 760.253 kb on - strand, within QEN71_RS03410 at 760.253 kb on - strand, within QEN71_RS03410 at 760.253 kb on - strand, within QEN71_RS03410 at 760.253 kb on - strand, within QEN71_RS03410 at 760.253 kb on - strand, within QEN71_RS03410 at 760.768 kb on + strand at 760.768 kb on + strand at 760.768 kb on + strand at 760.768 kb on + strand at 760.768 kb on + strand at 760.768 kb on + strand at 760.769 kb on - strand at 760.769 kb on - strand at 760.769 kb on - strand at 760.769 kb on - strand at 760.862 kb on + strand at 760.863 kb on + strand at 760.863 kb on + strand at 760.863 kb on + strand at 760.863 kb on + strand at 760.863 kb on + strand at 760.863 kb on + strand at 760.863 kb on + strand at 760.863 kb on + strand at 760.863 kb on + strand at 760.863 kb on + strand at 760.863 kb on + strand at 760.863 kb on + strand at 760.863 kb on + strand at 760.863 kb on + strand at 760.863 kb on + strand at 760.863 kb on + strand at 760.863 kb on + strand at 760.863 kb on + strand at 760.863 kb on + strand at 760.863 kb on + strand at 760.863 kb on + strand at 760.863 kb on + strand at 760.863 kb on + strand at 760.863 kb on + strand at 760.864 kb on - strand at 760.864 kb on - strand at 760.864 kb on - strand at 760.864 kb on - strand at 760.864 kb on - strand at 760.864 kb on - strand at 760.864 kb on - strand at 760.864 kb on - strand at 760.864 kb on - strand at 760.864 kb on - strand at 760.864 kb on - strand at 760.875 kb on - strand at 760.893 kb on + strand at 760.894 kb on - strand at 760.894 kb on - strand at 760.894 kb on - strand at 760.894 kb on - strand at 760.927 kb on + strand at 760.927 kb on + strand at 760.928 kb on - strand at 760.928 kb on - strand at 760.968 kb on + strand at 760.968 kb on + strand at 760.968 kb on + strand at 760.968 kb on + strand at 760.968 kb on + strand at 760.968 kb on + strand at 760.968 kb on + strand at 760.969 kb on - strand at 760.969 kb on - strand at 760.969 kb on - strand at 761.083 kb on + strand at 761.103 kb on + strand at 761.580 kb on + strand, within QEN71_RS03415 at 761.580 kb on + strand, within QEN71_RS03415 at 761.580 kb on + strand, within QEN71_RS03415 at 761.580 kb on + strand, within QEN71_RS03415 at 761.580 kb on + strand, within QEN71_RS03415 at 761.580 kb on + strand, within QEN71_RS03415 at 761.581 kb on - strand, within QEN71_RS03415 at 761.581 kb on - strand, within QEN71_RS03415 at 761.581 kb on - strand, within QEN71_RS03415 at 761.581 kb on - strand, within QEN71_RS03415 at 761.726 kb on + strand, within QEN71_RS03415 at 761.727 kb on - strand, within QEN71_RS03415 at 761.727 kb on - strand, within QEN71_RS03415 at 761.727 kb on - strand, within QEN71_RS03415 at 761.727 kb on - strand, within QEN71_RS03415 at 761.727 kb on - strand, within QEN71_RS03415 at 761.727 kb on - strand, within QEN71_RS03415 at 761.727 kb on - strand, within QEN71_RS03415
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 758,708 + QEN71_RS03405 0.53 -0.1 758,730 + QEN71_RS03405 0.54 +0.4 758,730 + QEN71_RS03405 0.54 -1.0 758,731 - QEN71_RS03405 0.54 +0.1 758,849 + QEN71_RS03405 0.61 -1.0 758,849 + QEN71_RS03405 0.61 -1.4 758,849 + QEN71_RS03405 0.61 -0.4 758,849 + QEN71_RS03405 0.61 +0.6 758,850 - QEN71_RS03405 0.61 -0.5 758,850 - QEN71_RS03405 0.61 +0.4 758,850 - QEN71_RS03405 0.61 -0.3 758,850 - QEN71_RS03405 0.61 -0.1 758,850 - QEN71_RS03405 0.61 +0.4 758,850 - QEN71_RS03405 0.61 -0.1 758,850 - QEN71_RS03405 0.61 -0.1 758,850 - QEN71_RS03405 0.61 +0.3 758,924 + QEN71_RS03405 0.66 -1.1 758,924 + QEN71_RS03405 0.66 +0.0 758,945 + QEN71_RS03405 0.67 -1.6 758,946 - QEN71_RS03405 0.67 -2.0 758,991 + QEN71_RS03405 0.70 +0.4 758,991 + QEN71_RS03405 0.70 -3.5 758,991 + QEN71_RS03405 0.70 +1.0 758,991 + QEN71_RS03405 0.70 +0.5 758,991 + QEN71_RS03405 0.70 -0.8 758,991 + QEN71_RS03405 0.70 +2.0 758,992 - QEN71_RS03405 0.70 -0.7 758,992 - QEN71_RS03405 0.70 +1.9 759,077 + QEN71_RS03405 0.75 -0.7 759,077 + QEN71_RS03405 0.75 +1.9 759,078 - QEN71_RS03405 0.75 -0.0 759,237 + QEN71_RS03405 0.85 -0.1 759,238 - QEN71_RS03405 0.85 +1.0 759,238 - QEN71_RS03405 0.85 -0.0 759,238 - QEN71_RS03405 0.85 +1.6 759,238 - QEN71_RS03405 0.85 +0.4 759,238 - QEN71_RS03405 0.85 -0.7 759,238 - QEN71_RS03405 0.85 +0.1 759,238 - QEN71_RS03405 0.85 -1.3 759,238 - QEN71_RS03405 0.85 -0.9 759,238 - QEN71_RS03405 0.85 -1.2 759,238 - QEN71_RS03405 0.85 +1.0 759,259 + QEN71_RS03405 0.87 +0.1 759,259 + QEN71_RS03405 0.87 +0.0 759,259 + QEN71_RS03405 0.87 +0.7 759,260 - QEN71_RS03405 0.87 -0.6 759,260 - QEN71_RS03405 0.87 -0.4 759,260 - QEN71_RS03405 0.87 +0.5 759,260 - QEN71_RS03405 0.87 -0.3 759,260 - QEN71_RS03405 0.87 -0.1 759,260 - QEN71_RS03405 0.87 +0.1 759,260 - QEN71_RS03405 0.87 -1.1 759,260 - QEN71_RS03405 0.87 +0.3 759,317 + -1.7 759,499 + -0.1 759,499 + -1.1 759,500 - -0.2 759,500 - +0.3 759,500 - +0.1 759,500 - +0.7 759,500 - +0.0 759,500 - -2.2 759,500 - -0.6 759,500 - +0.2 759,532 + -0.2 759,532 + -1.5 759,533 - -0.4 759,533 - -0.1 759,533 - -1.6 759,533 - -2.1 759,533 - +0.2 759,605 - -2.4 759,681 - QEN71_RS03410 0.14 +0.2 759,793 + QEN71_RS03410 0.23 +0.2 759,793 + QEN71_RS03410 0.23 -1.3 759,793 + QEN71_RS03410 0.23 +0.1 759,793 + QEN71_RS03410 0.23 -0.9 759,794 - QEN71_RS03410 0.23 -2.1 760,028 - QEN71_RS03410 0.41 -0.6 760,028 - QEN71_RS03410 0.41 +1.1 760,045 + QEN71_RS03410 0.42 -0.0 760,045 + QEN71_RS03410 0.42 -0.2 760,046 - QEN71_RS03410 0.42 +0.7 760,046 - QEN71_RS03410 0.42 +0.5 760,055 + QEN71_RS03410 0.43 -0.1 760,056 - QEN71_RS03410 0.43 -0.4 760,056 - QEN71_RS03410 0.43 +0.6 760,123 + QEN71_RS03410 0.48 -0.9 760,123 + QEN71_RS03410 0.48 -2.0 760,124 - QEN71_RS03410 0.48 +0.1 760,252 + QEN71_RS03410 0.58 -1.0 760,252 + QEN71_RS03410 0.58 +0.0 760,253 - QEN71_RS03410 0.58 -0.2 760,253 - QEN71_RS03410 0.58 +0.7 760,253 - QEN71_RS03410 0.58 +0.3 760,253 - QEN71_RS03410 0.58 -0.5 760,253 - QEN71_RS03410 0.58 +1.9 760,253 - QEN71_RS03410 0.58 +1.7 760,768 + -0.4 760,768 + -1.2 760,768 + -1.7 760,768 + +1.9 760,768 + -2.2 760,768 + +0.2 760,769 - -0.3 760,769 - -0.9 760,769 - -0.7 760,769 - +0.5 760,862 + +0.4 760,863 + -1.3 760,863 + -0.2 760,863 + +0.4 760,863 + -0.3 760,863 + -2.0 760,863 + +0.1 760,863 + +1.3 760,863 + -0.1 760,863 + +1.4 760,863 + -0.0 760,863 + +0.7 760,863 + -1.6 760,863 + +0.2 760,863 + +0.5 760,863 + -0.4 760,863 + +0.5 760,863 + +0.3 760,863 + +0.5 760,863 + +1.0 760,863 + -0.2 760,863 + -0.4 760,863 + +0.4 760,863 + +2.5 760,863 + -1.3 760,864 - -0.2 760,864 - -0.2 760,864 - -0.2 760,864 - -0.1 760,864 - +0.9 760,864 - +0.7 760,864 - +1.6 760,864 - +0.1 760,864 - -0.1 760,864 - -0.2 760,864 - -0.6 760,875 - -0.7 760,893 + -1.4 760,894 - +0.4 760,894 - +3.5 760,894 - +1.6 760,894 - +0.2 760,927 + +0.0 760,927 + +0.3 760,928 - +1.4 760,928 - +0.8 760,968 + +0.7 760,968 + -0.1 760,968 + +0.5 760,968 + -1.1 760,968 + -0.5 760,968 + -0.0 760,968 + -0.2 760,969 - -0.5 760,969 - +1.5 760,969 - -0.6 761,083 + +0.6 761,103 + -1.8 761,580 + QEN71_RS03415 0.35 -0.2 761,580 + QEN71_RS03415 0.35 +0.0 761,580 + QEN71_RS03415 0.35 -0.9 761,580 + QEN71_RS03415 0.35 -0.8 761,580 + QEN71_RS03415 0.35 +1.2 761,580 + QEN71_RS03415 0.35 -0.8 761,581 - QEN71_RS03415 0.35 +0.5 761,581 - QEN71_RS03415 0.35 -0.7 761,581 - QEN71_RS03415 0.35 +0.3 761,581 - QEN71_RS03415 0.35 -0.5 761,726 + QEN71_RS03415 0.46 -0.4 761,727 - QEN71_RS03415 0.46 +0.1 761,727 - QEN71_RS03415 0.46 -1.0 761,727 - QEN71_RS03415 0.46 -0.1 761,727 - QEN71_RS03415 0.46 -0.4 761,727 - QEN71_RS03415 0.46 -1.1 761,727 - QEN71_RS03415 0.46 +0.9 761,727 - QEN71_RS03415 0.46 -0.3
Or see this region's nucleotide sequence