Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS03300 and QEN71_RS03305 are separated by 39 nucleotides QEN71_RS03305 and QEN71_RS03310 are separated by 204 nucleotides
QEN71_RS03300: QEN71_RS03300 - bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD, at 731,502 to 732,623
_RS03300
QEN71_RS03305: QEN71_RS03305 - glutamate-1-semialdehyde 2,1-aminomutase, at 732,663 to 733,943
_RS03305
QEN71_RS03310: QEN71_RS03310 - hypothetical protein, at 734,148 to 734,792
_RS03310
Position (kb) 732
733
734 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 732.644 kb on - strand at 732.644 kb on - strand at 734.007 kb on - strand at 734.007 kb on - strand at 734.007 kb on - strand at 734.024 kb on - strand at 734.091 kb on + strand at 734.092 kb on - strand at 734.092 kb on - strand at 734.092 kb on - strand at 734.224 kb on + strand, within QEN71_RS03310 at 734.224 kb on + strand, within QEN71_RS03310 at 734.224 kb on + strand, within QEN71_RS03310 at 734.224 kb on + strand, within QEN71_RS03310 at 734.224 kb on + strand, within QEN71_RS03310 at 734.224 kb on + strand, within QEN71_RS03310 at 734.224 kb on + strand, within QEN71_RS03310 at 734.224 kb on + strand, within QEN71_RS03310 at 734.224 kb on + strand, within QEN71_RS03310 at 734.225 kb on - strand, within QEN71_RS03310 at 734.225 kb on - strand, within QEN71_RS03310 at 734.225 kb on - strand, within QEN71_RS03310 at 734.225 kb on - strand, within QEN71_RS03310 at 734.225 kb on - strand, within QEN71_RS03310 at 734.225 kb on - strand, within QEN71_RS03310 at 734.225 kb on - strand, within QEN71_RS03310 at 734.225 kb on - strand, within QEN71_RS03310 at 734.225 kb on - strand, within QEN71_RS03310 at 734.515 kb on + strand, within QEN71_RS03310 at 734.515 kb on + strand, within QEN71_RS03310 at 734.515 kb on + strand, within QEN71_RS03310 at 734.515 kb on + strand, within QEN71_RS03310 at 734.515 kb on + strand, within QEN71_RS03310 at 734.515 kb on + strand, within QEN71_RS03310 at 734.515 kb on + strand, within QEN71_RS03310 at 734.515 kb on + strand, within QEN71_RS03310 at 734.516 kb on - strand, within QEN71_RS03310 at 734.516 kb on - strand, within QEN71_RS03310 at 734.516 kb on - strand, within QEN71_RS03310 at 734.516 kb on - strand, within QEN71_RS03310 at 734.521 kb on + strand, within QEN71_RS03310 at 734.521 kb on + strand, within QEN71_RS03310 at 734.522 kb on - strand, within QEN71_RS03310 at 734.522 kb on - strand, within QEN71_RS03310 at 734.522 kb on - strand, within QEN71_RS03310 at 734.578 kb on + strand, within QEN71_RS03310 at 734.596 kb on + strand, within QEN71_RS03310 at 734.596 kb on + strand, within QEN71_RS03310 at 734.596 kb on + strand, within QEN71_RS03310 at 734.596 kb on + strand, within QEN71_RS03310 at 734.596 kb on + strand, within QEN71_RS03310 at 734.596 kb on + strand, within QEN71_RS03310 at 734.888 kb on + strand at 734.888 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 732,644 - -0.9 732,644 - +1.2 734,007 - +1.6 734,007 - -1.0 734,007 - -0.1 734,024 - -0.7 734,091 + -0.2 734,092 - -0.2 734,092 - +0.5 734,092 - +0.5 734,224 + QEN71_RS03310 0.12 +0.4 734,224 + QEN71_RS03310 0.12 -2.7 734,224 + QEN71_RS03310 0.12 -0.3 734,224 + QEN71_RS03310 0.12 -0.0 734,224 + QEN71_RS03310 0.12 -0.6 734,224 + QEN71_RS03310 0.12 -0.2 734,224 + QEN71_RS03310 0.12 -1.1 734,224 + QEN71_RS03310 0.12 +0.4 734,224 + QEN71_RS03310 0.12 -0.1 734,225 - QEN71_RS03310 0.12 +0.4 734,225 - QEN71_RS03310 0.12 -0.8 734,225 - QEN71_RS03310 0.12 -0.2 734,225 - QEN71_RS03310 0.12 -2.6 734,225 - QEN71_RS03310 0.12 +0.6 734,225 - QEN71_RS03310 0.12 -0.5 734,225 - QEN71_RS03310 0.12 -0.6 734,225 - QEN71_RS03310 0.12 +0.2 734,225 - QEN71_RS03310 0.12 -2.5 734,515 + QEN71_RS03310 0.57 -0.1 734,515 + QEN71_RS03310 0.57 -0.8 734,515 + QEN71_RS03310 0.57 +2.4 734,515 + QEN71_RS03310 0.57 -0.7 734,515 + QEN71_RS03310 0.57 +0.2 734,515 + QEN71_RS03310 0.57 +1.3 734,515 + QEN71_RS03310 0.57 -1.6 734,515 + QEN71_RS03310 0.57 -1.0 734,516 - QEN71_RS03310 0.57 +0.6 734,516 - QEN71_RS03310 0.57 -0.1 734,516 - QEN71_RS03310 0.57 +0.3 734,516 - QEN71_RS03310 0.57 -1.7 734,521 + QEN71_RS03310 0.58 -0.7 734,521 + QEN71_RS03310 0.58 +0.1 734,522 - QEN71_RS03310 0.58 -0.5 734,522 - QEN71_RS03310 0.58 +0.4 734,522 - QEN71_RS03310 0.58 +0.3 734,578 + QEN71_RS03310 0.67 -0.1 734,596 + QEN71_RS03310 0.69 -0.2 734,596 + QEN71_RS03310 0.69 +0.7 734,596 + QEN71_RS03310 0.69 -0.5 734,596 + QEN71_RS03310 0.69 -2.5 734,596 + QEN71_RS03310 0.69 -0.7 734,596 + QEN71_RS03310 0.69 +2.9 734,888 + +0.5 734,888 + -0.1
Or see this region's nucleotide sequence