Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS03025

Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS03020 and QEN71_RS03025 are separated by 149 nucleotidesQEN71_RS03025 and QEN71_RS03030 overlap by 1 nucleotides QEN71_RS03020: QEN71_RS03020 - bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC, at 673,780 to 675,003 _RS03020 QEN71_RS03025: QEN71_RS03025 - signal peptidase II, at 675,153 to 675,653 _RS03025 QEN71_RS03030: QEN71_RS03030 - isoleucine--tRNA ligase, at 675,653 to 678,490 _RS03030 Position (kb) 675 676Strain fitness (log2 ratio) -1 0 1 2at 675.061 kb on - strandat 675.061 kb on - strandat 675.061 kb on - strandat 675.061 kb on - strandat 675.150 kb on - strandat 675.150 kb on - strandat 675.150 kb on - strandat 675.150 kb on - strandat 675.150 kb on - strandat 675.150 kb on - strandat 675.150 kb on - strandat 675.150 kb on - strandat 675.150 kb on - strandat 675.150 kb on - strandat 675.150 kb on - strandat 675.150 kb on - strandat 675.150 kb on - strandat 675.655 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
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675,061 - +0.5
675,061 - +0.3
675,061 - -0.9
675,061 - +1.5
675,150 - -0.1
675,150 - +1.9
675,150 - -0.7
675,150 - +1.0
675,150 - -0.0
675,150 - -0.1
675,150 - +1.9
675,150 - -0.8
675,150 - -0.4
675,150 - -0.3
675,150 - +0.2
675,150 - -0.2
675,150 - -0.4
675,655 - +0.6

Or see this region's nucleotide sequence