Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS02730

Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS02725 and QEN71_RS02730 are separated by 168 nucleotidesQEN71_RS02730 and QEN71_RS02735 are separated by 646 nucleotides QEN71_RS02725: QEN71_RS02725 - pirin family protein, at 611,084 to 611,965 _RS02725 QEN71_RS02730: QEN71_RS02730 - EamA family transporter, at 612,134 to 613,015 _RS02730 QEN71_RS02735: QEN71_RS02735 - N-acetylmuramoyl-L-alanine amidase, at 613,662 to 615,197 _RS02735 Position (kb) 612 613 614Strain fitness (log2 ratio) -2 -1 0 1 2at 611.367 kb on + strand, within QEN71_RS02725at 611.367 kb on + strand, within QEN71_RS02725at 611.367 kb on + strand, within QEN71_RS02725at 611.368 kb on - strand, within QEN71_RS02725at 611.368 kb on - strand, within QEN71_RS02725at 611.368 kb on - strand, within QEN71_RS02725at 611.368 kb on - strand, within QEN71_RS02725at 611.436 kb on + strand, within QEN71_RS02725at 611.436 kb on + strand, within QEN71_RS02725at 611.436 kb on + strand, within QEN71_RS02725at 611.436 kb on + strand, within QEN71_RS02725at 611.437 kb on - strand, within QEN71_RS02725at 611.437 kb on - strand, within QEN71_RS02725at 611.437 kb on - strand, within QEN71_RS02725at 611.437 kb on - strand, within QEN71_RS02725at 611.437 kb on - strand, within QEN71_RS02725at 611.437 kb on - strand, within QEN71_RS02725at 611.437 kb on - strand, within QEN71_RS02725at 611.763 kb on + strand, within QEN71_RS02725at 611.763 kb on + strand, within QEN71_RS02725at 611.763 kb on + strand, within QEN71_RS02725at 611.763 kb on + strand, within QEN71_RS02725at 611.763 kb on + strand, within QEN71_RS02725at 611.764 kb on - strand, within QEN71_RS02725at 611.764 kb on - strand, within QEN71_RS02725at 611.764 kb on - strand, within QEN71_RS02725at 611.764 kb on - strand, within QEN71_RS02725at 611.764 kb on - strand, within QEN71_RS02725at 611.764 kb on - strand, within QEN71_RS02725at 611.764 kb on - strand, within QEN71_RS02725at 611.764 kb on - strand, within QEN71_RS02725at 611.764 kb on - strand, within QEN71_RS02725at 611.764 kb on - strand, within QEN71_RS02725at 611.785 kb on + strand, within QEN71_RS02725at 611.786 kb on - strand, within QEN71_RS02725at 611.786 kb on - strand, within QEN71_RS02725at 612.002 kb on + strandat 612.003 kb on - strandat 612.003 kb on - strandat 612.060 kb on + strandat 612.060 kb on + strandat 612.324 kb on - strand, within QEN71_RS02730at 612.374 kb on + strand, within QEN71_RS02730at 612.374 kb on + strand, within QEN71_RS02730at 612.374 kb on + strand, within QEN71_RS02730at 612.374 kb on + strand, within QEN71_RS02730at 612.374 kb on + strand, within QEN71_RS02730at 612.374 kb on + strand, within QEN71_RS02730at 612.374 kb on + strand, within QEN71_RS02730at 612.374 kb on + strand, within QEN71_RS02730at 612.374 kb on + strand, within QEN71_RS02730at 612.374 kb on + strand, within QEN71_RS02730at 612.374 kb on + strand, within QEN71_RS02730at 612.375 kb on - strand, within QEN71_RS02730at 612.375 kb on - strand, within QEN71_RS02730at 612.375 kb on - strand, within QEN71_RS02730at 612.375 kb on - strand, within QEN71_RS02730at 612.375 kb on - strand, within QEN71_RS02730at 612.375 kb on - strand, within QEN71_RS02730at 612.375 kb on - strand, within QEN71_RS02730at 612.375 kb on - strand, within QEN71_RS02730at 612.375 kb on - strand, within QEN71_RS02730at 612.375 kb on - strand, within QEN71_RS02730at 612.375 kb on - strand, within QEN71_RS02730at 612.375 kb on - strand, within QEN71_RS02730at 612.604 kb on + strand, within QEN71_RS02730at 612.605 kb on - strand, within QEN71_RS02730at 612.695 kb on + strand, within QEN71_RS02730at 612.695 kb on + strand, within QEN71_RS02730at 612.695 kb on + strand, within QEN71_RS02730at 612.695 kb on + strand, within QEN71_RS02730at 612.695 kb on + strand, within QEN71_RS02730at 612.695 kb on + strand, within QEN71_RS02730at 612.695 kb on + strand, within QEN71_RS02730at 612.695 kb on + strand, within QEN71_RS02730at 612.695 kb on + strand, within QEN71_RS02730at 612.695 kb on + strand, within QEN71_RS02730at 612.695 kb on + strand, within QEN71_RS02730at 612.695 kb on + strand, within QEN71_RS02730at 612.695 kb on + strand, within QEN71_RS02730at 612.695 kb on + strand, within QEN71_RS02730at 612.695 kb on + strand, within QEN71_RS02730at 612.695 kb on + strand, within QEN71_RS02730at 612.695 kb on + strand, within QEN71_RS02730at 612.695 kb on + strand, within QEN71_RS02730at 612.695 kb on + strand, within QEN71_RS02730at 612.696 kb on - strand, within QEN71_RS02730at 612.696 kb on - strand, within QEN71_RS02730at 612.696 kb on - strand, within QEN71_RS02730at 612.696 kb on - strand, within QEN71_RS02730at 612.696 kb on - strand, within QEN71_RS02730at 612.696 kb on - strand, within QEN71_RS02730at 612.696 kb on - strand, within QEN71_RS02730at 612.696 kb on - strand, within QEN71_RS02730at 612.696 kb on - strand, within QEN71_RS02730at 612.696 kb on - strand, within QEN71_RS02730at 612.696 kb on - strand, within QEN71_RS02730at 612.696 kb on - strand, within QEN71_RS02730at 612.696 kb on - strand, within QEN71_RS02730at 612.696 kb on - strand, within QEN71_RS02730at 612.696 kb on - strand, within QEN71_RS02730at 612.696 kb on - strand, within QEN71_RS02730at 612.697 kb on + strand, within QEN71_RS02730at 612.697 kb on + strand, within QEN71_RS02730at 612.697 kb on + strand, within QEN71_RS02730at 612.697 kb on + strand, within QEN71_RS02730at 612.697 kb on + strand, within QEN71_RS02730at 612.697 kb on + strand, within QEN71_RS02730at 612.697 kb on + strand, within QEN71_RS02730at 612.697 kb on + strand, within QEN71_RS02730at 612.697 kb on + strand, within QEN71_RS02730at 612.698 kb on - strand, within QEN71_RS02730at 612.698 kb on - strand, within QEN71_RS02730at 612.698 kb on - strand, within QEN71_RS02730at 612.698 kb on - strand, within QEN71_RS02730at 612.698 kb on - strand, within QEN71_RS02730at 612.967 kb on + strandat 612.967 kb on + strandat 612.967 kb on + strandat 612.968 kb on - strandat 612.968 kb on - strandat 612.968 kb on - strandat 613.036 kb on + strandat 613.043 kb on + strandat 613.044 kb on - strandat 613.044 kb on - strandat 613.044 kb on - strandat 613.044 kb on - strandat 613.086 kb on - strandat 613.094 kb on - strandat 613.094 kb on - strandat 613.094 kb on - strandat 613.250 kb on - strandat 613.250 kb on - strandat 613.250 kb on - strandat 613.305 kb on + strandat 613.305 kb on + strandat 613.305 kb on + strandat 613.305 kb on + strandat 613.305 kb on + strandat 613.306 kb on - strandat 613.306 kb on - strandat 613.306 kb on - strandat 613.306 kb on - strandat 613.306 kb on - strandat 613.307 kb on - strandat 613.634 kb on + strandat 613.634 kb on + strandat 613.635 kb on - strandat 613.641 kb on + strandat 613.663 kb on + strandat 613.663 kb on + strandat 613.664 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
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611,367 + QEN71_RS02725 0.32 -0.1
611,367 + QEN71_RS02725 0.32 +0.8
611,367 + QEN71_RS02725 0.32 -0.4
611,368 - QEN71_RS02725 0.32 -0.9
611,368 - QEN71_RS02725 0.32 -1.8
611,368 - QEN71_RS02725 0.32 +0.4
611,368 - QEN71_RS02725 0.32 -0.1
611,436 + QEN71_RS02725 0.40 -1.4
611,436 + QEN71_RS02725 0.40 -0.7
611,436 + QEN71_RS02725 0.40 +0.0
611,436 + QEN71_RS02725 0.40 -1.9
611,437 - QEN71_RS02725 0.40 +0.1
611,437 - QEN71_RS02725 0.40 -0.9
611,437 - QEN71_RS02725 0.40 -0.0
611,437 - QEN71_RS02725 0.40 -0.4
611,437 - QEN71_RS02725 0.40 +0.4
611,437 - QEN71_RS02725 0.40 -0.9
611,437 - QEN71_RS02725 0.40 -0.2
611,763 + QEN71_RS02725 0.77 -0.1
611,763 + QEN71_RS02725 0.77 +0.9
611,763 + QEN71_RS02725 0.77 -2.4
611,763 + QEN71_RS02725 0.77 -0.1
611,763 + QEN71_RS02725 0.77 +0.0
611,764 - QEN71_RS02725 0.77 +1.7
611,764 - QEN71_RS02725 0.77 -0.9
611,764 - QEN71_RS02725 0.77 +0.6
611,764 - QEN71_RS02725 0.77 +0.5
611,764 - QEN71_RS02725 0.77 -0.1
611,764 - QEN71_RS02725 0.77 -0.2
611,764 - QEN71_RS02725 0.77 +0.1
611,764 - QEN71_RS02725 0.77 -0.9
611,764 - QEN71_RS02725 0.77 +1.9
611,764 - QEN71_RS02725 0.77 +0.6
611,785 + QEN71_RS02725 0.79 +0.5
611,786 - QEN71_RS02725 0.80 -0.0
611,786 - QEN71_RS02725 0.80 +0.0
612,002 + -0.4
612,003 - +0.2
612,003 - -0.5
612,060 + -0.3
612,060 + -0.6
612,324 - QEN71_RS02730 0.22 -1.5
612,374 + QEN71_RS02730 0.27 -0.7
612,374 + QEN71_RS02730 0.27 +0.6
612,374 + QEN71_RS02730 0.27 +0.6
612,374 + QEN71_RS02730 0.27 +1.2
612,374 + QEN71_RS02730 0.27 -1.6
612,374 + QEN71_RS02730 0.27 +0.1
612,374 + QEN71_RS02730 0.27 +1.1
612,374 + QEN71_RS02730 0.27 +0.9
612,374 + QEN71_RS02730 0.27 +0.7
612,374 + QEN71_RS02730 0.27 +0.1
612,374 + QEN71_RS02730 0.27 +1.1
612,375 - QEN71_RS02730 0.27 +1.5
612,375 - QEN71_RS02730 0.27 -1.4
612,375 - QEN71_RS02730 0.27 +0.2
612,375 - QEN71_RS02730 0.27 -0.6
612,375 - QEN71_RS02730 0.27 -1.7
612,375 - QEN71_RS02730 0.27 -0.2
612,375 - QEN71_RS02730 0.27 -0.1
612,375 - QEN71_RS02730 0.27 +0.2
612,375 - QEN71_RS02730 0.27 -0.1
612,375 - QEN71_RS02730 0.27 -0.7
612,375 - QEN71_RS02730 0.27 -2.4
612,375 - QEN71_RS02730 0.27 +1.2
612,604 + QEN71_RS02730 0.53 -2.2
612,605 - QEN71_RS02730 0.53 +0.4
612,695 + QEN71_RS02730 0.64 +0.5
612,695 + QEN71_RS02730 0.64 +2.0
612,695 + QEN71_RS02730 0.64 +0.3
612,695 + QEN71_RS02730 0.64 -0.7
612,695 + QEN71_RS02730 0.64 +0.7
612,695 + QEN71_RS02730 0.64 -2.2
612,695 + QEN71_RS02730 0.64 +0.1
612,695 + QEN71_RS02730 0.64 -2.5
612,695 + QEN71_RS02730 0.64 +1.7
612,695 + QEN71_RS02730 0.64 +0.1
612,695 + QEN71_RS02730 0.64 +1.4
612,695 + QEN71_RS02730 0.64 +0.1
612,695 + QEN71_RS02730 0.64 +0.2
612,695 + QEN71_RS02730 0.64 +0.2
612,695 + QEN71_RS02730 0.64 +0.4
612,695 + QEN71_RS02730 0.64 -1.3
612,695 + QEN71_RS02730 0.64 +1.6
612,695 + QEN71_RS02730 0.64 +0.2
612,695 + QEN71_RS02730 0.64 +0.1
612,696 - QEN71_RS02730 0.64 -0.2
612,696 - QEN71_RS02730 0.64 +1.7
612,696 - QEN71_RS02730 0.64 +0.0
612,696 - QEN71_RS02730 0.64 +1.0
612,696 - QEN71_RS02730 0.64 -1.4
612,696 - QEN71_RS02730 0.64 -1.0
612,696 - QEN71_RS02730 0.64 -0.0
612,696 - QEN71_RS02730 0.64 +0.9
612,696 - QEN71_RS02730 0.64 +0.5
612,696 - QEN71_RS02730 0.64 +0.5
612,696 - QEN71_RS02730 0.64 -2.6
612,696 - QEN71_RS02730 0.64 -0.9
612,696 - QEN71_RS02730 0.64 -0.2
612,696 - QEN71_RS02730 0.64 -1.0
612,696 - QEN71_RS02730 0.64 +0.7
612,696 - QEN71_RS02730 0.64 -0.9
612,697 + QEN71_RS02730 0.64 +1.2
612,697 + QEN71_RS02730 0.64 -0.0
612,697 + QEN71_RS02730 0.64 -2.0
612,697 + QEN71_RS02730 0.64 -0.0
612,697 + QEN71_RS02730 0.64 +0.2
612,697 + QEN71_RS02730 0.64 -0.5
612,697 + QEN71_RS02730 0.64 +0.9
612,697 + QEN71_RS02730 0.64 +0.8
612,697 + QEN71_RS02730 0.64 -0.2
612,698 - QEN71_RS02730 0.64 -0.9
612,698 - QEN71_RS02730 0.64 +0.5
612,698 - QEN71_RS02730 0.64 -0.9
612,698 - QEN71_RS02730 0.64 -0.7
612,698 - QEN71_RS02730 0.64 -1.3
612,967 + -0.4
612,967 + +0.6
612,967 + +0.6
612,968 - -0.7
612,968 - -0.2
612,968 - -0.4
613,036 + +1.1
613,043 + -0.7
613,044 - +0.6
613,044 - -0.9
613,044 - -2.1
613,044 - +0.4
613,086 - -0.4
613,094 - +0.5
613,094 - -0.7
613,094 - +1.1
613,250 - -1.0
613,250 - -0.3
613,250 - -1.4
613,305 + +0.3
613,305 + -0.3
613,305 + +0.3
613,305 + -0.7
613,305 + +1.8
613,306 - +0.2
613,306 - -1.6
613,306 - -1.2
613,306 - -0.1
613,306 - +0.1
613,307 - -0.8
613,634 + +0.1
613,634 + +0.0
613,635 - +0.4
613,641 + +1.3
613,663 + +0.1
613,663 + +0.5
613,664 - +0.7

Or see this region's nucleotide sequence