Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS02675 and QEN71_RS02680 are separated by 26 nucleotides QEN71_RS02680 and QEN71_RS02685 are separated by 132 nucleotides QEN71_RS02685 and QEN71_RS02690 are separated by 57 nucleotides QEN71_RS02690 and QEN71_RS02695 are separated by 306 nucleotides
QEN71_RS02675: QEN71_RS02675 - kynureninase, at 601,737 to 602,987
_RS02675
QEN71_RS02680: QEN71_RS02680 - arylformamidase, at 603,014 to 603,661
_RS02680
QEN71_RS02685: QEN71_RS02685 - Lrp/AsnC family transcriptional regulator, at 603,794 to 604,300
_RS02685
QEN71_RS02690: QEN71_RS02690 - flavin reductase family protein, at 604,358 to 604,870
_RS02690
QEN71_RS02695: QEN71_RS02695 - peptide-methionine (S)-S-oxide reductase MsrA, at 605,177 to 605,722
_RS02695
Position (kb) 603
604
605 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 602.835 kb on + strand, within QEN71_RS02675 at 602.896 kb on + strand at 602.896 kb on + strand at 602.896 kb on + strand at 602.896 kb on + strand at 602.896 kb on + strand at 602.896 kb on + strand at 602.896 kb on + strand at 602.897 kb on - strand at 602.897 kb on - strand at 602.897 kb on - strand at 602.897 kb on - strand at 603.112 kb on - strand, within QEN71_RS02680 at 603.313 kb on + strand, within QEN71_RS02680 at 603.313 kb on + strand, within QEN71_RS02680 at 603.313 kb on + strand, within QEN71_RS02680 at 603.313 kb on + strand, within QEN71_RS02680 at 603.313 kb on + strand, within QEN71_RS02680 at 603.314 kb on - strand, within QEN71_RS02680 at 603.314 kb on - strand, within QEN71_RS02680 at 603.314 kb on - strand, within QEN71_RS02680 at 603.314 kb on - strand, within QEN71_RS02680 at 603.314 kb on - strand, within QEN71_RS02680 at 603.314 kb on - strand, within QEN71_RS02680 at 603.314 kb on - strand, within QEN71_RS02680 at 603.314 kb on - strand, within QEN71_RS02680 at 603.314 kb on - strand, within QEN71_RS02680 at 603.330 kb on + strand, within QEN71_RS02680 at 603.330 kb on + strand, within QEN71_RS02680 at 603.330 kb on + strand, within QEN71_RS02680 at 603.331 kb on - strand, within QEN71_RS02680 at 603.331 kb on - strand, within QEN71_RS02680 at 603.331 kb on - strand, within QEN71_RS02680 at 603.331 kb on - strand, within QEN71_RS02680 at 603.331 kb on - strand, within QEN71_RS02680 at 603.331 kb on - strand, within QEN71_RS02680 at 603.331 kb on - strand, within QEN71_RS02680 at 603.331 kb on - strand, within QEN71_RS02680 at 603.331 kb on - strand, within QEN71_RS02680 at 603.374 kb on + strand, within QEN71_RS02680 at 603.374 kb on + strand, within QEN71_RS02680 at 603.374 kb on + strand, within QEN71_RS02680 at 603.375 kb on - strand, within QEN71_RS02680 at 603.375 kb on - strand, within QEN71_RS02680 at 603.375 kb on - strand, within QEN71_RS02680 at 603.375 kb on - strand, within QEN71_RS02680 at 603.441 kb on + strand, within QEN71_RS02680 at 603.441 kb on + strand, within QEN71_RS02680 at 603.441 kb on + strand, within QEN71_RS02680 at 603.441 kb on + strand, within QEN71_RS02680 at 603.441 kb on + strand, within QEN71_RS02680 at 603.442 kb on - strand, within QEN71_RS02680 at 603.442 kb on - strand, within QEN71_RS02680 at 603.442 kb on - strand, within QEN71_RS02680 at 603.442 kb on - strand, within QEN71_RS02680 at 603.442 kb on - strand, within QEN71_RS02680 at 603.442 kb on - strand, within QEN71_RS02680 at 603.487 kb on - strand, within QEN71_RS02680 at 603.487 kb on - strand, within QEN71_RS02680 at 603.686 kb on + strand at 603.686 kb on + strand at 603.686 kb on + strand at 603.686 kb on + strand at 603.686 kb on + strand at 603.686 kb on + strand at 603.687 kb on + strand at 603.687 kb on - strand at 603.687 kb on - strand at 603.687 kb on - strand at 603.687 kb on - strand at 603.687 kb on - strand at 603.687 kb on - strand at 603.687 kb on - strand at 603.687 kb on - strand at 603.699 kb on + strand at 603.699 kb on + strand at 603.727 kb on + strand at 603.761 kb on + strand at 603.762 kb on - strand at 603.829 kb on + strand at 604.014 kb on + strand, within QEN71_RS02685 at 604.014 kb on + strand, within QEN71_RS02685 at 604.014 kb on + strand, within QEN71_RS02685 at 604.015 kb on - strand, within QEN71_RS02685 at 604.015 kb on - strand, within QEN71_RS02685 at 604.015 kb on - strand, within QEN71_RS02685 at 604.118 kb on + strand, within QEN71_RS02685 at 604.118 kb on + strand, within QEN71_RS02685 at 604.118 kb on + strand, within QEN71_RS02685 at 604.118 kb on + strand, within QEN71_RS02685 at 604.119 kb on - strand, within QEN71_RS02685 at 604.119 kb on - strand, within QEN71_RS02685 at 604.119 kb on - strand, within QEN71_RS02685 at 604.119 kb on - strand, within QEN71_RS02685 at 604.119 kb on - strand, within QEN71_RS02685 at 604.119 kb on - strand, within QEN71_RS02685 at 604.119 kb on - strand, within QEN71_RS02685 at 604.155 kb on - strand, within QEN71_RS02685 at 604.181 kb on + strand, within QEN71_RS02685 at 604.181 kb on + strand, within QEN71_RS02685 at 604.181 kb on + strand, within QEN71_RS02685 at 604.181 kb on + strand, within QEN71_RS02685 at 604.181 kb on + strand, within QEN71_RS02685 at 604.181 kb on + strand, within QEN71_RS02685 at 604.182 kb on - strand, within QEN71_RS02685 at 604.182 kb on - strand, within QEN71_RS02685 at 604.182 kb on - strand, within QEN71_RS02685 at 604.486 kb on - strand, within QEN71_RS02690 at 604.532 kb on + strand, within QEN71_RS02690 at 604.647 kb on + strand, within QEN71_RS02690 at 604.647 kb on + strand, within QEN71_RS02690 at 604.647 kb on + strand, within QEN71_RS02690 at 604.647 kb on + strand, within QEN71_RS02690 at 604.647 kb on + strand, within QEN71_RS02690 at 604.647 kb on + strand, within QEN71_RS02690 at 604.647 kb on + strand, within QEN71_RS02690 at 604.647 kb on + strand, within QEN71_RS02690 at 604.647 kb on + strand, within QEN71_RS02690 at 604.647 kb on + strand, within QEN71_RS02690 at 604.647 kb on + strand, within QEN71_RS02690 at 604.647 kb on + strand, within QEN71_RS02690 at 604.647 kb on + strand, within QEN71_RS02690 at 604.647 kb on + strand, within QEN71_RS02690 at 604.647 kb on + strand, within QEN71_RS02690 at 604.647 kb on + strand, within QEN71_RS02690 at 604.648 kb on - strand, within QEN71_RS02690 at 604.648 kb on - strand, within QEN71_RS02690 at 604.648 kb on - strand, within QEN71_RS02690 at 604.648 kb on - strand, within QEN71_RS02690 at 604.648 kb on - strand, within QEN71_RS02690 at 604.648 kb on - strand, within QEN71_RS02690 at 604.648 kb on - strand, within QEN71_RS02690 at 604.648 kb on - strand, within QEN71_RS02690 at 604.648 kb on - strand, within QEN71_RS02690 at 604.648 kb on - strand, within QEN71_RS02690 at 604.648 kb on - strand, within QEN71_RS02690 at 604.648 kb on - strand, within QEN71_RS02690 at 604.648 kb on - strand, within QEN71_RS02690 at 604.786 kb on + strand, within QEN71_RS02690 at 604.787 kb on - strand, within QEN71_RS02690 at 604.943 kb on + strand at 604.943 kb on + strand at 604.944 kb on - strand at 604.944 kb on - strand at 605.029 kb on + strand at 605.074 kb on + strand at 605.074 kb on + strand at 605.074 kb on + strand at 605.075 kb on - strand at 605.075 kb on - strand at 605.075 kb on - strand at 605.075 kb on - strand at 605.240 kb on + strand, within QEN71_RS02695 at 605.240 kb on + strand, within QEN71_RS02695 at 605.240 kb on + strand, within QEN71_RS02695 at 605.240 kb on + strand, within QEN71_RS02695 at 605.240 kb on + strand, within QEN71_RS02695 at 605.240 kb on + strand, within QEN71_RS02695 at 605.241 kb on - strand, within QEN71_RS02695 at 605.241 kb on - strand, within QEN71_RS02695 at 605.241 kb on - strand, within QEN71_RS02695 at 605.241 kb on - strand, within QEN71_RS02695 at 605.241 kb on - strand, within QEN71_RS02695 at 605.241 kb on - strand, within QEN71_RS02695
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 602,835 + QEN71_RS02675 0.88 -0.4 602,896 + +0.2 602,896 + -0.1 602,896 + +2.6 602,896 + +0.3 602,896 + -0.7 602,896 + -1.3 602,896 + +1.1 602,897 - +0.9 602,897 - -0.0 602,897 - +0.5 602,897 - +1.1 603,112 - QEN71_RS02680 0.15 -0.2 603,313 + QEN71_RS02680 0.46 +0.3 603,313 + QEN71_RS02680 0.46 -0.1 603,313 + QEN71_RS02680 0.46 +0.4 603,313 + QEN71_RS02680 0.46 -0.7 603,313 + QEN71_RS02680 0.46 +2.0 603,314 - QEN71_RS02680 0.46 -0.3 603,314 - QEN71_RS02680 0.46 +0.5 603,314 - QEN71_RS02680 0.46 +1.3 603,314 - QEN71_RS02680 0.46 +0.8 603,314 - QEN71_RS02680 0.46 -1.2 603,314 - QEN71_RS02680 0.46 -0.6 603,314 - QEN71_RS02680 0.46 +0.5 603,314 - QEN71_RS02680 0.46 +2.1 603,314 - QEN71_RS02680 0.46 -0.5 603,330 + QEN71_RS02680 0.49 -0.1 603,330 + QEN71_RS02680 0.49 +0.6 603,330 + QEN71_RS02680 0.49 +0.2 603,331 - QEN71_RS02680 0.49 +0.2 603,331 - QEN71_RS02680 0.49 +0.3 603,331 - QEN71_RS02680 0.49 -0.7 603,331 - QEN71_RS02680 0.49 -0.1 603,331 - QEN71_RS02680 0.49 +0.4 603,331 - QEN71_RS02680 0.49 +0.3 603,331 - QEN71_RS02680 0.49 -0.1 603,331 - QEN71_RS02680 0.49 -0.7 603,331 - QEN71_RS02680 0.49 +0.9 603,374 + QEN71_RS02680 0.56 +0.9 603,374 + QEN71_RS02680 0.56 +0.6 603,374 + QEN71_RS02680 0.56 -0.1 603,375 - QEN71_RS02680 0.56 -1.7 603,375 - QEN71_RS02680 0.56 +0.5 603,375 - QEN71_RS02680 0.56 -0.9 603,375 - QEN71_RS02680 0.56 -0.6 603,441 + QEN71_RS02680 0.66 +1.5 603,441 + QEN71_RS02680 0.66 +0.9 603,441 + QEN71_RS02680 0.66 -0.1 603,441 + QEN71_RS02680 0.66 +0.1 603,441 + QEN71_RS02680 0.66 +0.2 603,442 - QEN71_RS02680 0.66 -1.2 603,442 - QEN71_RS02680 0.66 +0.2 603,442 - QEN71_RS02680 0.66 -0.5 603,442 - QEN71_RS02680 0.66 -0.2 603,442 - QEN71_RS02680 0.66 -0.2 603,442 - QEN71_RS02680 0.66 -0.3 603,487 - QEN71_RS02680 0.73 -0.5 603,487 - QEN71_RS02680 0.73 +0.1 603,686 + -1.6 603,686 + -0.1 603,686 + +1.1 603,686 + -2.9 603,686 + -0.4 603,686 + -1.0 603,687 + -0.7 603,687 - +0.3 603,687 - +0.3 603,687 - +0.1 603,687 - -2.5 603,687 - +0.3 603,687 - -0.4 603,687 - +0.1 603,687 - -0.7 603,699 + -0.3 603,699 + -0.4 603,727 + +1.0 603,761 + -0.3 603,762 - -1.8 603,829 + -1.0 604,014 + QEN71_RS02685 0.43 +0.0 604,014 + QEN71_RS02685 0.43 -0.5 604,014 + QEN71_RS02685 0.43 -0.0 604,015 - QEN71_RS02685 0.44 +0.4 604,015 - QEN71_RS02685 0.44 +0.2 604,015 - QEN71_RS02685 0.44 -1.8 604,118 + QEN71_RS02685 0.64 -0.1 604,118 + QEN71_RS02685 0.64 +1.7 604,118 + QEN71_RS02685 0.64 -1.0 604,118 + QEN71_RS02685 0.64 -0.8 604,119 - QEN71_RS02685 0.64 -0.9 604,119 - QEN71_RS02685 0.64 +0.4 604,119 - QEN71_RS02685 0.64 -0.7 604,119 - QEN71_RS02685 0.64 -1.8 604,119 - QEN71_RS02685 0.64 -0.8 604,119 - QEN71_RS02685 0.64 -1.2 604,119 - QEN71_RS02685 0.64 -0.2 604,155 - QEN71_RS02685 0.71 +0.8 604,181 + QEN71_RS02685 0.76 -2.6 604,181 + QEN71_RS02685 0.76 -0.2 604,181 + QEN71_RS02685 0.76 -0.4 604,181 + QEN71_RS02685 0.76 -0.9 604,181 + QEN71_RS02685 0.76 -0.9 604,181 + QEN71_RS02685 0.76 -0.4 604,182 - QEN71_RS02685 0.77 -0.8 604,182 - QEN71_RS02685 0.77 +0.5 604,182 - QEN71_RS02685 0.77 -0.4 604,486 - QEN71_RS02690 0.25 +0.2 604,532 + QEN71_RS02690 0.34 +1.0 604,647 + QEN71_RS02690 0.56 -0.9 604,647 + QEN71_RS02690 0.56 -1.1 604,647 + QEN71_RS02690 0.56 -0.2 604,647 + QEN71_RS02690 0.56 -0.3 604,647 + QEN71_RS02690 0.56 -1.0 604,647 + QEN71_RS02690 0.56 -0.2 604,647 + QEN71_RS02690 0.56 -0.5 604,647 + QEN71_RS02690 0.56 +0.9 604,647 + QEN71_RS02690 0.56 -0.2 604,647 + QEN71_RS02690 0.56 +0.5 604,647 + QEN71_RS02690 0.56 -0.5 604,647 + QEN71_RS02690 0.56 -1.2 604,647 + QEN71_RS02690 0.56 +0.3 604,647 + QEN71_RS02690 0.56 -0.1 604,647 + QEN71_RS02690 0.56 -0.6 604,647 + QEN71_RS02690 0.56 -0.0 604,648 - QEN71_RS02690 0.57 +0.1 604,648 - QEN71_RS02690 0.57 -0.5 604,648 - QEN71_RS02690 0.57 -0.7 604,648 - QEN71_RS02690 0.57 +1.0 604,648 - QEN71_RS02690 0.57 -1.7 604,648 - QEN71_RS02690 0.57 +0.6 604,648 - QEN71_RS02690 0.57 +0.2 604,648 - QEN71_RS02690 0.57 -0.1 604,648 - QEN71_RS02690 0.57 +0.7 604,648 - QEN71_RS02690 0.57 -0.6 604,648 - QEN71_RS02690 0.57 -0.1 604,648 - QEN71_RS02690 0.57 -0.3 604,648 - QEN71_RS02690 0.57 -0.1 604,786 + QEN71_RS02690 0.83 -0.3 604,787 - QEN71_RS02690 0.84 -1.3 604,943 + -0.8 604,943 + -0.5 604,944 - +0.1 604,944 - -0.8 605,029 + -0.5 605,074 + -0.3 605,074 + -0.6 605,074 + +0.3 605,075 - +0.0 605,075 - +0.1 605,075 - -0.4 605,075 - -0.6 605,240 + QEN71_RS02695 0.12 -0.5 605,240 + QEN71_RS02695 0.12 +0.6 605,240 + QEN71_RS02695 0.12 +0.8 605,240 + QEN71_RS02695 0.12 -0.2 605,240 + QEN71_RS02695 0.12 +0.9 605,240 + QEN71_RS02695 0.12 +0.7 605,241 - QEN71_RS02695 0.12 +0.1 605,241 - QEN71_RS02695 0.12 -0.4 605,241 - QEN71_RS02695 0.12 -0.2 605,241 - QEN71_RS02695 0.12 +0.4 605,241 - QEN71_RS02695 0.12 -0.6 605,241 - QEN71_RS02695 0.12 -1.1
Or see this region's nucleotide sequence