Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS02140 and QEN71_RS02145 are separated by 608 nucleotides QEN71_RS02145 and QEN71_RS02150 are separated by 60 nucleotides QEN71_RS02150 and QEN71_RS02155 are separated by 37 nucleotides
QEN71_RS02140: QEN71_RS02140 - lactoylglutathione lyase, at 480,479 to 480,865
_RS02140
QEN71_RS02145: QEN71_RS02145 - SprT family zinc-dependent metalloprotease, at 481,474 to 482,331
_RS02145
QEN71_RS02150: QEN71_RS02150 - lysophospholipid acyltransferase family protein, at 482,392 to 483,150
_RS02150
QEN71_RS02155: QEN71_RS02155 - D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase, at 483,188 to 483,745
_RS02155
Position (kb) 481
482
483 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 480.536 kb on + strand, within QEN71_RS02140 at 480.536 kb on + strand, within QEN71_RS02140 at 480.536 kb on + strand, within QEN71_RS02140 at 480.536 kb on + strand, within QEN71_RS02140 at 480.537 kb on - strand, within QEN71_RS02140 at 480.537 kb on - strand, within QEN71_RS02140 at 480.537 kb on - strand, within QEN71_RS02140 at 480.537 kb on - strand, within QEN71_RS02140 at 480.537 kb on - strand, within QEN71_RS02140 at 480.615 kb on - strand, within QEN71_RS02140 at 480.655 kb on + strand, within QEN71_RS02140 at 480.655 kb on + strand, within QEN71_RS02140 at 480.655 kb on + strand, within QEN71_RS02140 at 480.655 kb on + strand, within QEN71_RS02140 at 480.655 kb on + strand, within QEN71_RS02140 at 480.655 kb on + strand, within QEN71_RS02140 at 480.656 kb on - strand, within QEN71_RS02140 at 480.656 kb on - strand, within QEN71_RS02140 at 480.656 kb on - strand, within QEN71_RS02140 at 480.656 kb on - strand, within QEN71_RS02140 at 480.656 kb on - strand, within QEN71_RS02140 at 480.674 kb on + strand, within QEN71_RS02140 at 480.674 kb on + strand, within QEN71_RS02140 at 480.675 kb on - strand, within QEN71_RS02140 at 480.685 kb on + strand, within QEN71_RS02140 at 480.725 kb on + strand, within QEN71_RS02140 at 480.725 kb on + strand, within QEN71_RS02140 at 480.725 kb on + strand, within QEN71_RS02140 at 480.725 kb on + strand, within QEN71_RS02140 at 480.726 kb on - strand, within QEN71_RS02140 at 480.726 kb on - strand, within QEN71_RS02140 at 480.726 kb on - strand, within QEN71_RS02140 at 480.726 kb on - strand, within QEN71_RS02140 at 480.726 kb on - strand, within QEN71_RS02140 at 480.784 kb on + strand, within QEN71_RS02140 at 480.784 kb on + strand, within QEN71_RS02140 at 480.785 kb on - strand, within QEN71_RS02140 at 480.785 kb on - strand, within QEN71_RS02140 at 480.785 kb on - strand, within QEN71_RS02140 at 480.785 kb on - strand, within QEN71_RS02140 at 480.785 kb on - strand, within QEN71_RS02140 at 480.833 kb on + strand at 480.833 kb on + strand at 480.834 kb on - strand at 480.835 kb on + strand at 480.835 kb on + strand at 480.835 kb on + strand at 480.835 kb on + strand at 480.835 kb on + strand at 480.835 kb on + strand at 480.836 kb on - strand at 480.836 kb on - strand at 480.836 kb on - strand at 480.836 kb on - strand at 480.836 kb on - strand at 480.836 kb on - strand at 480.836 kb on - strand at 480.836 kb on - strand at 481.038 kb on + strand at 481.038 kb on + strand at 481.038 kb on + strand at 481.038 kb on + strand at 481.038 kb on + strand at 481.091 kb on + strand at 481.091 kb on + strand at 481.129 kb on + strand at 481.172 kb on + strand at 481.172 kb on + strand at 481.173 kb on - strand at 481.173 kb on - strand at 481.173 kb on - strand at 481.173 kb on - strand at 481.232 kb on + strand at 481.232 kb on + strand at 481.232 kb on + strand at 481.232 kb on + strand at 481.233 kb on - strand at 481.286 kb on - strand at 481.286 kb on - strand at 481.286 kb on - strand at 481.509 kb on + strand at 481.509 kb on + strand at 481.509 kb on + strand at 481.509 kb on + strand at 481.509 kb on + strand at 481.509 kb on + strand at 481.509 kb on + strand at 481.509 kb on + strand at 481.509 kb on + strand at 481.509 kb on + strand at 481.509 kb on + strand at 481.509 kb on + strand at 481.509 kb on + strand at 481.509 kb on + strand at 481.509 kb on + strand at 481.509 kb on + strand at 481.509 kb on + strand at 481.509 kb on + strand at 481.509 kb on + strand at 481.509 kb on + strand at 481.509 kb on + strand at 481.509 kb on + strand at 481.509 kb on + strand at 481.509 kb on + strand at 481.509 kb on + strand at 481.509 kb on + strand at 481.509 kb on + strand at 481.509 kb on + strand at 481.509 kb on + strand at 481.510 kb on - strand at 481.510 kb on - strand at 481.510 kb on - strand at 481.510 kb on - strand at 481.510 kb on - strand at 481.510 kb on - strand at 481.510 kb on - strand at 481.510 kb on - strand at 481.510 kb on - strand at 481.510 kb on - strand at 481.510 kb on - strand at 481.510 kb on - strand at 481.510 kb on - strand at 481.510 kb on - strand at 481.510 kb on - strand at 481.510 kb on - strand at 481.510 kb on - strand at 481.510 kb on - strand at 481.510 kb on - strand at 481.510 kb on - strand at 481.510 kb on - strand at 481.510 kb on - strand at 481.510 kb on - strand at 481.510 kb on - strand at 481.510 kb on - strand at 481.510 kb on - strand at 481.510 kb on - strand at 481.510 kb on - strand at 481.546 kb on - strand at 481.575 kb on + strand, within QEN71_RS02145 at 481.576 kb on - strand, within QEN71_RS02145 at 481.576 kb on - strand, within QEN71_RS02145 at 481.576 kb on - strand, within QEN71_RS02145 at 481.576 kb on - strand, within QEN71_RS02145 at 481.576 kb on - strand, within QEN71_RS02145 at 481.612 kb on + strand, within QEN71_RS02145 at 481.612 kb on + strand, within QEN71_RS02145 at 481.619 kb on + strand, within QEN71_RS02145 at 481.619 kb on + strand, within QEN71_RS02145 at 481.619 kb on + strand, within QEN71_RS02145 at 481.619 kb on + strand, within QEN71_RS02145 at 481.619 kb on + strand, within QEN71_RS02145 at 481.619 kb on + strand, within QEN71_RS02145 at 481.619 kb on + strand, within QEN71_RS02145 at 481.620 kb on - strand, within QEN71_RS02145 at 481.620 kb on - strand, within QEN71_RS02145 at 481.620 kb on - strand, within QEN71_RS02145 at 481.620 kb on - strand, within QEN71_RS02145 at 481.620 kb on - strand, within QEN71_RS02145 at 481.620 kb on - strand, within QEN71_RS02145 at 481.620 kb on - strand, within QEN71_RS02145 at 481.721 kb on + strand, within QEN71_RS02145 at 481.721 kb on + strand, within QEN71_RS02145 at 481.722 kb on - strand, within QEN71_RS02145 at 481.722 kb on - strand, within QEN71_RS02145 at 481.730 kb on + strand, within QEN71_RS02145 at 481.730 kb on + strand, within QEN71_RS02145 at 481.730 kb on + strand, within QEN71_RS02145 at 481.731 kb on - strand, within QEN71_RS02145 at 481.731 kb on - strand, within QEN71_RS02145 at 481.731 kb on - strand, within QEN71_RS02145 at 481.731 kb on - strand, within QEN71_RS02145 at 481.754 kb on + strand, within QEN71_RS02145 at 481.754 kb on + strand, within QEN71_RS02145 at 481.754 kb on + strand, within QEN71_RS02145 at 481.754 kb on + strand, within QEN71_RS02145 at 481.754 kb on + strand, within QEN71_RS02145 at 481.754 kb on + strand, within QEN71_RS02145 at 481.754 kb on + strand, within QEN71_RS02145 at 481.755 kb on - strand, within QEN71_RS02145 at 481.755 kb on - strand, within QEN71_RS02145 at 481.883 kb on + strand, within QEN71_RS02145 at 481.883 kb on + strand, within QEN71_RS02145 at 481.884 kb on - strand, within QEN71_RS02145 at 481.926 kb on + strand, within QEN71_RS02145 at 481.926 kb on + strand, within QEN71_RS02145 at 481.926 kb on + strand, within QEN71_RS02145 at 481.927 kb on - strand, within QEN71_RS02145 at 481.927 kb on - strand, within QEN71_RS02145 at 481.927 kb on - strand, within QEN71_RS02145 at 481.927 kb on - strand, within QEN71_RS02145 at 481.927 kb on - strand, within QEN71_RS02145 at 481.927 kb on - strand, within QEN71_RS02145 at 481.927 kb on - strand, within QEN71_RS02145 at 481.927 kb on - strand, within QEN71_RS02145 at 481.927 kb on - strand, within QEN71_RS02145 at 481.927 kb on - strand, within QEN71_RS02145 at 481.937 kb on + strand, within QEN71_RS02145 at 481.937 kb on + strand, within QEN71_RS02145 at 481.937 kb on + strand, within QEN71_RS02145 at 481.937 kb on + strand, within QEN71_RS02145 at 481.937 kb on + strand, within QEN71_RS02145 at 481.937 kb on + strand, within QEN71_RS02145 at 481.937 kb on + strand, within QEN71_RS02145 at 481.938 kb on - strand, within QEN71_RS02145 at 481.938 kb on - strand, within QEN71_RS02145 at 481.938 kb on - strand, within QEN71_RS02145 at 481.938 kb on - strand, within QEN71_RS02145 at 481.938 kb on - strand, within QEN71_RS02145 at 481.992 kb on + strand, within QEN71_RS02145 at 481.993 kb on - strand, within QEN71_RS02145 at 482.153 kb on + strand, within QEN71_RS02145 at 482.154 kb on - strand, within QEN71_RS02145 at 482.154 kb on - strand, within QEN71_RS02145 at 482.154 kb on - strand, within QEN71_RS02145 at 482.154 kb on - strand, within QEN71_RS02145 at 482.154 kb on - strand, within QEN71_RS02145 at 482.154 kb on - strand, within QEN71_RS02145 at 482.351 kb on + strand at 482.351 kb on + strand at 482.352 kb on - strand at 482.352 kb on - strand at 482.352 kb on - strand at 482.352 kb on - strand at 482.361 kb on + strand at 482.362 kb on - strand at 482.362 kb on - strand at 482.362 kb on - strand at 482.362 kb on - strand at 482.362 kb on - strand at 482.362 kb on - strand at 482.432 kb on + strand at 482.432 kb on + strand at 482.433 kb on - strand at 482.548 kb on + strand, within QEN71_RS02150 at 482.549 kb on - strand, within QEN71_RS02150 at 482.558 kb on + strand, within QEN71_RS02150 at 482.660 kb on + strand, within QEN71_RS02150 at 482.660 kb on + strand, within QEN71_RS02150 at 482.661 kb on - strand, within QEN71_RS02150 at 482.661 kb on - strand, within QEN71_RS02150 at 482.661 kb on - strand, within QEN71_RS02150 at 482.837 kb on + strand, within QEN71_RS02150 at 482.838 kb on - strand, within QEN71_RS02150 at 482.838 kb on - strand, within QEN71_RS02150 at 482.838 kb on - strand, within QEN71_RS02150 at 482.861 kb on + strand, within QEN71_RS02150 at 482.861 kb on + strand, within QEN71_RS02150 at 482.862 kb on - strand, within QEN71_RS02150 at 482.862 kb on - strand, within QEN71_RS02150 at 482.862 kb on - strand, within QEN71_RS02150 at 483.179 kb on + strand at 483.179 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 480,536 + QEN71_RS02140 0.15 -0.3 480,536 + QEN71_RS02140 0.15 -0.1 480,536 + QEN71_RS02140 0.15 -0.7 480,536 + QEN71_RS02140 0.15 -1.1 480,537 - QEN71_RS02140 0.15 -0.3 480,537 - QEN71_RS02140 0.15 +2.2 480,537 - QEN71_RS02140 0.15 -0.1 480,537 - QEN71_RS02140 0.15 -0.1 480,537 - QEN71_RS02140 0.15 +1.4 480,615 - QEN71_RS02140 0.35 +0.1 480,655 + QEN71_RS02140 0.45 +0.7 480,655 + QEN71_RS02140 0.45 -0.7 480,655 + QEN71_RS02140 0.45 -0.3 480,655 + QEN71_RS02140 0.45 +0.4 480,655 + QEN71_RS02140 0.45 -0.4 480,655 + QEN71_RS02140 0.45 -0.8 480,656 - QEN71_RS02140 0.46 -3.0 480,656 - QEN71_RS02140 0.46 -0.6 480,656 - QEN71_RS02140 0.46 -0.2 480,656 - QEN71_RS02140 0.46 +0.7 480,656 - QEN71_RS02140 0.46 -0.4 480,674 + QEN71_RS02140 0.50 -1.8 480,674 + QEN71_RS02140 0.50 -0.4 480,675 - QEN71_RS02140 0.51 -0.7 480,685 + QEN71_RS02140 0.53 -0.6 480,725 + QEN71_RS02140 0.64 +0.6 480,725 + QEN71_RS02140 0.64 -0.7 480,725 + QEN71_RS02140 0.64 +0.1 480,725 + QEN71_RS02140 0.64 +0.1 480,726 - QEN71_RS02140 0.64 +1.5 480,726 - QEN71_RS02140 0.64 -2.5 480,726 - QEN71_RS02140 0.64 +0.0 480,726 - QEN71_RS02140 0.64 -1.3 480,726 - QEN71_RS02140 0.64 +1.2 480,784 + QEN71_RS02140 0.79 +0.4 480,784 + QEN71_RS02140 0.79 +0.9 480,785 - QEN71_RS02140 0.79 +1.1 480,785 - QEN71_RS02140 0.79 +2.5 480,785 - QEN71_RS02140 0.79 -1.4 480,785 - QEN71_RS02140 0.79 -0.8 480,785 - QEN71_RS02140 0.79 +0.2 480,833 + +0.6 480,833 + -0.9 480,834 - +0.1 480,835 + -0.1 480,835 + +0.6 480,835 + +0.0 480,835 + -0.6 480,835 + +0.1 480,835 + -0.8 480,836 - +0.0 480,836 - -1.0 480,836 - +0.0 480,836 - -0.2 480,836 - +0.7 480,836 - +1.6 480,836 - +0.6 480,836 - +0.8 481,038 + +0.9 481,038 + +0.2 481,038 + -0.8 481,038 + -0.9 481,038 + -0.5 481,091 + -1.9 481,091 + -0.7 481,129 + +0.4 481,172 + -1.1 481,172 + -0.1 481,173 - +0.0 481,173 - -0.6 481,173 - +0.6 481,173 - -0.5 481,232 + -0.2 481,232 + -1.4 481,232 + -1.0 481,232 + -0.5 481,233 - +0.8 481,286 - +0.4 481,286 - +0.3 481,286 - -0.5 481,509 + +0.7 481,509 + -1.0 481,509 + -0.2 481,509 + +0.6 481,509 + +0.3 481,509 + +1.1 481,509 + +0.1 481,509 + +0.6 481,509 + +0.4 481,509 + +1.5 481,509 + -0.4 481,509 + +0.1 481,509 + +0.2 481,509 + -1.1 481,509 + -0.9 481,509 + +1.5 481,509 + -0.5 481,509 + -1.6 481,509 + -0.7 481,509 + -1.0 481,509 + +0.9 481,509 + -0.4 481,509 + -2.2 481,509 + -0.7 481,509 + -2.2 481,509 + +0.2 481,509 + +0.0 481,509 + -0.4 481,509 + -0.7 481,510 - +0.6 481,510 - +0.1 481,510 - +0.0 481,510 - -0.2 481,510 - +1.3 481,510 - -0.4 481,510 - -0.5 481,510 - +0.6 481,510 - -1.1 481,510 - -1.7 481,510 - +0.1 481,510 - +0.8 481,510 - +0.9 481,510 - +0.4 481,510 - -0.1 481,510 - +0.2 481,510 - +0.6 481,510 - +0.6 481,510 - +1.2 481,510 - +1.5 481,510 - -1.7 481,510 - -0.5 481,510 - -1.4 481,510 - +0.2 481,510 - +1.1 481,510 - -3.0 481,510 - +2.0 481,510 - -0.4 481,546 - +0.3 481,575 + QEN71_RS02145 0.12 +1.3 481,576 - QEN71_RS02145 0.12 +0.6 481,576 - QEN71_RS02145 0.12 +0.4 481,576 - QEN71_RS02145 0.12 +1.6 481,576 - QEN71_RS02145 0.12 -0.3 481,576 - QEN71_RS02145 0.12 -0.5 481,612 + QEN71_RS02145 0.16 -0.1 481,612 + QEN71_RS02145 0.16 -0.4 481,619 + QEN71_RS02145 0.17 -1.5 481,619 + QEN71_RS02145 0.17 -0.2 481,619 + QEN71_RS02145 0.17 +0.7 481,619 + QEN71_RS02145 0.17 +0.1 481,619 + QEN71_RS02145 0.17 +0.9 481,619 + QEN71_RS02145 0.17 +0.4 481,619 + QEN71_RS02145 0.17 +0.6 481,620 - QEN71_RS02145 0.17 +0.5 481,620 - QEN71_RS02145 0.17 +0.3 481,620 - QEN71_RS02145 0.17 -0.6 481,620 - QEN71_RS02145 0.17 -0.1 481,620 - QEN71_RS02145 0.17 +1.3 481,620 - QEN71_RS02145 0.17 -0.4 481,620 - QEN71_RS02145 0.17 -0.2 481,721 + QEN71_RS02145 0.29 +0.1 481,721 + QEN71_RS02145 0.29 -0.1 481,722 - QEN71_RS02145 0.29 -0.0 481,722 - QEN71_RS02145 0.29 -0.4 481,730 + QEN71_RS02145 0.30 +0.5 481,730 + QEN71_RS02145 0.30 +0.4 481,730 + QEN71_RS02145 0.30 -0.4 481,731 - QEN71_RS02145 0.30 -0.6 481,731 - QEN71_RS02145 0.30 -0.8 481,731 - QEN71_RS02145 0.30 +0.1 481,731 - QEN71_RS02145 0.30 -0.4 481,754 + QEN71_RS02145 0.33 +1.4 481,754 + QEN71_RS02145 0.33 +0.8 481,754 + QEN71_RS02145 0.33 +0.2 481,754 + QEN71_RS02145 0.33 +3.1 481,754 + QEN71_RS02145 0.33 +0.9 481,754 + QEN71_RS02145 0.33 +0.6 481,754 + QEN71_RS02145 0.33 -0.3 481,755 - QEN71_RS02145 0.33 -0.6 481,755 - QEN71_RS02145 0.33 -0.4 481,883 + QEN71_RS02145 0.48 +0.2 481,883 + QEN71_RS02145 0.48 -1.4 481,884 - QEN71_RS02145 0.48 +0.1 481,926 + QEN71_RS02145 0.53 -0.4 481,926 + QEN71_RS02145 0.53 +1.3 481,926 + QEN71_RS02145 0.53 +0.5 481,927 - QEN71_RS02145 0.53 +0.1 481,927 - QEN71_RS02145 0.53 -0.5 481,927 - QEN71_RS02145 0.53 +0.3 481,927 - QEN71_RS02145 0.53 +0.1 481,927 - QEN71_RS02145 0.53 +0.7 481,927 - QEN71_RS02145 0.53 -0.3 481,927 - QEN71_RS02145 0.53 -1.2 481,927 - QEN71_RS02145 0.53 +0.5 481,927 - QEN71_RS02145 0.53 +1.0 481,927 - QEN71_RS02145 0.53 -0.9 481,937 + QEN71_RS02145 0.54 -0.8 481,937 + QEN71_RS02145 0.54 -0.6 481,937 + QEN71_RS02145 0.54 -0.6 481,937 + QEN71_RS02145 0.54 -0.1 481,937 + QEN71_RS02145 0.54 -0.6 481,937 + QEN71_RS02145 0.54 -0.5 481,937 + QEN71_RS02145 0.54 -0.5 481,938 - QEN71_RS02145 0.54 -2.4 481,938 - QEN71_RS02145 0.54 -0.2 481,938 - QEN71_RS02145 0.54 +1.6 481,938 - QEN71_RS02145 0.54 +0.3 481,938 - QEN71_RS02145 0.54 -0.1 481,992 + QEN71_RS02145 0.60 -2.0 481,993 - QEN71_RS02145 0.60 -0.4 482,153 + QEN71_RS02145 0.79 +0.3 482,154 - QEN71_RS02145 0.79 +0.5 482,154 - QEN71_RS02145 0.79 -0.4 482,154 - QEN71_RS02145 0.79 -0.4 482,154 - QEN71_RS02145 0.79 +0.2 482,154 - QEN71_RS02145 0.79 -0.1 482,154 - QEN71_RS02145 0.79 +0.3 482,351 + -1.4 482,351 + -0.3 482,352 - +1.0 482,352 - +0.9 482,352 - +0.1 482,352 - -0.4 482,361 + +0.3 482,362 - -0.4 482,362 - -0.0 482,362 - -2.2 482,362 - -2.5 482,362 - +0.1 482,362 - -0.8 482,432 + -0.8 482,432 + +0.1 482,433 - -1.8 482,548 + QEN71_RS02150 0.21 -0.4 482,549 - QEN71_RS02150 0.21 -0.7 482,558 + QEN71_RS02150 0.22 -1.4 482,660 + QEN71_RS02150 0.35 -0.4 482,660 + QEN71_RS02150 0.35 -0.1 482,661 - QEN71_RS02150 0.35 -0.1 482,661 - QEN71_RS02150 0.35 -0.9 482,661 - QEN71_RS02150 0.35 -1.1 482,837 + QEN71_RS02150 0.59 -0.1 482,838 - QEN71_RS02150 0.59 -1.3 482,838 - QEN71_RS02150 0.59 -0.9 482,838 - QEN71_RS02150 0.59 -0.1 482,861 + QEN71_RS02150 0.62 -2.4 482,861 + QEN71_RS02150 0.62 -1.1 482,862 - QEN71_RS02150 0.62 -0.1 482,862 - QEN71_RS02150 0.62 -0.7 482,862 - QEN71_RS02150 0.62 -1.4 483,179 + -1.7 483,179 + -0.1
Or see this region's nucleotide sequence