Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS00930

Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS00925 and QEN71_RS00930 are separated by 60 nucleotidesQEN71_RS00930 and QEN71_RS00935 are separated by 403 nucleotides QEN71_RS00925: QEN71_RS00925 - solute carrier family 23 protein, at 207,483 to 208,790 _RS00925 QEN71_RS00930: QEN71_RS00930 - Na+/H+ antiporter, at 208,851 to 210,515 _RS00930 QEN71_RS00935: QEN71_RS00935 - EAL domain-containing protein, at 210,919 to 212,193 _RS00935 Position (kb) 208 209 210 211Strain fitness (log2 ratio) -2 -1 0 1 2at 208.002 kb on + strand, within QEN71_RS00925at 208.002 kb on + strand, within QEN71_RS00925at 208.002 kb on + strand, within QEN71_RS00925at 208.003 kb on - strand, within QEN71_RS00925at 208.003 kb on - strand, within QEN71_RS00925at 208.003 kb on - strand, within QEN71_RS00925at 208.003 kb on - strand, within QEN71_RS00925at 208.003 kb on - strand, within QEN71_RS00925at 208.003 kb on - strand, within QEN71_RS00925at 208.003 kb on - strand, within QEN71_RS00925at 208.101 kb on + strand, within QEN71_RS00925at 208.102 kb on - strand, within QEN71_RS00925at 208.102 kb on - strand, within QEN71_RS00925at 208.102 kb on - strand, within QEN71_RS00925at 208.111 kb on - strand, within QEN71_RS00925at 208.111 kb on - strand, within QEN71_RS00925at 208.323 kb on + strand, within QEN71_RS00925at 208.323 kb on + strand, within QEN71_RS00925at 208.323 kb on + strand, within QEN71_RS00925at 208.324 kb on - strand, within QEN71_RS00925at 208.324 kb on - strand, within QEN71_RS00925at 208.324 kb on - strand, within QEN71_RS00925at 208.324 kb on - strand, within QEN71_RS00925at 208.401 kb on + strand, within QEN71_RS00925at 208.401 kb on + strand, within QEN71_RS00925at 208.402 kb on - strand, within QEN71_RS00925at 208.402 kb on - strand, within QEN71_RS00925at 208.402 kb on - strand, within QEN71_RS00925at 208.402 kb on - strand, within QEN71_RS00925at 208.413 kb on - strand, within QEN71_RS00925at 208.440 kb on + strand, within QEN71_RS00925at 208.440 kb on + strand, within QEN71_RS00925at 208.441 kb on - strand, within QEN71_RS00925at 208.747 kb on - strandat 208.747 kb on - strandat 208.846 kb on + strandat 208.847 kb on - strandat 208.852 kb on + strandat 208.852 kb on + strandat 208.852 kb on + strandat 208.852 kb on + strandat 208.852 kb on + strandat 208.852 kb on + strandat 208.852 kb on + strandat 208.852 kb on + strandat 208.852 kb on + strandat 208.852 kb on + strandat 208.853 kb on - strandat 208.853 kb on - strandat 208.853 kb on - strandat 208.853 kb on - strandat 208.853 kb on - strandat 208.853 kb on - strandat 209.080 kb on + strand, within QEN71_RS00930at 209.080 kb on + strand, within QEN71_RS00930at 209.080 kb on + strand, within QEN71_RS00930at 209.081 kb on - strand, within QEN71_RS00930at 209.081 kb on - strand, within QEN71_RS00930at 209.081 kb on - strand, within QEN71_RS00930at 209.081 kb on - strand, within QEN71_RS00930at 209.081 kb on - strand, within QEN71_RS00930at 209.081 kb on - strand, within QEN71_RS00930at 209.081 kb on - strand, within QEN71_RS00930at 209.434 kb on - strand, within QEN71_RS00930at 209.434 kb on - strand, within QEN71_RS00930at 209.533 kb on + strand, within QEN71_RS00930at 209.533 kb on + strand, within QEN71_RS00930at 209.533 kb on + strand, within QEN71_RS00930at 209.533 kb on + strand, within QEN71_RS00930at 209.533 kb on + strand, within QEN71_RS00930at 209.533 kb on + strand, within QEN71_RS00930at 209.560 kb on + strand, within QEN71_RS00930at 209.560 kb on + strand, within QEN71_RS00930at 209.561 kb on - strand, within QEN71_RS00930at 209.818 kb on + strand, within QEN71_RS00930at 209.818 kb on + strand, within QEN71_RS00930at 209.819 kb on - strand, within QEN71_RS00930at 209.819 kb on - strand, within QEN71_RS00930at 209.819 kb on - strand, within QEN71_RS00930at 209.819 kb on - strand, within QEN71_RS00930at 210.077 kb on + strand, within QEN71_RS00930at 210.077 kb on + strand, within QEN71_RS00930at 210.077 kb on + strand, within QEN71_RS00930at 210.077 kb on + strand, within QEN71_RS00930at 210.078 kb on - strand, within QEN71_RS00930at 210.078 kb on - strand, within QEN71_RS00930at 210.078 kb on - strand, within QEN71_RS00930at 210.211 kb on + strand, within QEN71_RS00930at 210.211 kb on + strand, within QEN71_RS00930at 210.280 kb on + strand, within QEN71_RS00930at 210.280 kb on + strand, within QEN71_RS00930at 210.280 kb on + strand, within QEN71_RS00930at 210.280 kb on + strand, within QEN71_RS00930at 210.281 kb on - strand, within QEN71_RS00930at 210.281 kb on - strand, within QEN71_RS00930at 210.281 kb on - strand, within QEN71_RS00930at 210.281 kb on - strand, within QEN71_RS00930at 210.281 kb on - strand, within QEN71_RS00930at 210.510 kb on - strandat 210.512 kb on - strandat 210.612 kb on - strandat 210.995 kb on - strandat 211.043 kb on + strandat 211.076 kb on - strand, within QEN71_RS00935at 211.369 kb on - strand, within QEN71_RS00935

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
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208,002 + QEN71_RS00925 0.40 -0.7
208,002 + QEN71_RS00925 0.40 -0.6
208,002 + QEN71_RS00925 0.40 -1.2
208,003 - QEN71_RS00925 0.40 -1.3
208,003 - QEN71_RS00925 0.40 -2.7
208,003 - QEN71_RS00925 0.40 -1.2
208,003 - QEN71_RS00925 0.40 -0.6
208,003 - QEN71_RS00925 0.40 -0.2
208,003 - QEN71_RS00925 0.40 +0.0
208,003 - QEN71_RS00925 0.40 -0.4
208,101 + QEN71_RS00925 0.47 -0.4
208,102 - QEN71_RS00925 0.47 -2.1
208,102 - QEN71_RS00925 0.47 +0.3
208,102 - QEN71_RS00925 0.47 -1.2
208,111 - QEN71_RS00925 0.48 -0.0
208,111 - QEN71_RS00925 0.48 +0.8
208,323 + QEN71_RS00925 0.64 -2.2
208,323 + QEN71_RS00925 0.64 +0.8
208,323 + QEN71_RS00925 0.64 +0.5
208,324 - QEN71_RS00925 0.64 +0.7
208,324 - QEN71_RS00925 0.64 +1.3
208,324 - QEN71_RS00925 0.64 -0.4
208,324 - QEN71_RS00925 0.64 -0.2
208,401 + QEN71_RS00925 0.70 -1.4
208,401 + QEN71_RS00925 0.70 -0.3
208,402 - QEN71_RS00925 0.70 +0.5
208,402 - QEN71_RS00925 0.70 +1.4
208,402 - QEN71_RS00925 0.70 -0.1
208,402 - QEN71_RS00925 0.70 +0.2
208,413 - QEN71_RS00925 0.71 -0.9
208,440 + QEN71_RS00925 0.73 +0.4
208,440 + QEN71_RS00925 0.73 +0.4
208,441 - QEN71_RS00925 0.73 +0.3
208,747 - -0.2
208,747 - -0.7
208,846 + +0.2
208,847 - +2.1
208,852 + -1.3
208,852 + -0.3
208,852 + +1.4
208,852 + +0.0
208,852 + -1.0
208,852 + -0.9
208,852 + +0.6
208,852 + -0.2
208,852 + +0.3
208,852 + +0.5
208,853 - -0.7
208,853 - -1.7
208,853 - -0.5
208,853 - -1.2
208,853 - -0.2
208,853 - -1.0
209,080 + QEN71_RS00930 0.14 -0.7
209,080 + QEN71_RS00930 0.14 +0.4
209,080 + QEN71_RS00930 0.14 -0.2
209,081 - QEN71_RS00930 0.14 +0.8
209,081 - QEN71_RS00930 0.14 +1.2
209,081 - QEN71_RS00930 0.14 +2.4
209,081 - QEN71_RS00930 0.14 +1.0
209,081 - QEN71_RS00930 0.14 -0.3
209,081 - QEN71_RS00930 0.14 -1.1
209,081 - QEN71_RS00930 0.14 -0.3
209,434 - QEN71_RS00930 0.35 -0.1
209,434 - QEN71_RS00930 0.35 +0.0
209,533 + QEN71_RS00930 0.41 +0.9
209,533 + QEN71_RS00930 0.41 -0.3
209,533 + QEN71_RS00930 0.41 +0.8
209,533 + QEN71_RS00930 0.41 +0.4
209,533 + QEN71_RS00930 0.41 +0.5
209,533 + QEN71_RS00930 0.41 +1.1
209,560 + QEN71_RS00930 0.43 -0.4
209,560 + QEN71_RS00930 0.43 +0.2
209,561 - QEN71_RS00930 0.43 -0.7
209,818 + QEN71_RS00930 0.58 -0.1
209,818 + QEN71_RS00930 0.58 +0.7
209,819 - QEN71_RS00930 0.58 -1.9
209,819 - QEN71_RS00930 0.58 -1.6
209,819 - QEN71_RS00930 0.58 +0.6
209,819 - QEN71_RS00930 0.58 +0.1
210,077 + QEN71_RS00930 0.74 -1.0
210,077 + QEN71_RS00930 0.74 -0.2
210,077 + QEN71_RS00930 0.74 +0.0
210,077 + QEN71_RS00930 0.74 +0.6
210,078 - QEN71_RS00930 0.74 -1.7
210,078 - QEN71_RS00930 0.74 +0.3
210,078 - QEN71_RS00930 0.74 -0.5
210,211 + QEN71_RS00930 0.82 +0.3
210,211 + QEN71_RS00930 0.82 +0.5
210,280 + QEN71_RS00930 0.86 -0.8
210,280 + QEN71_RS00930 0.86 +0.7
210,280 + QEN71_RS00930 0.86 -0.2
210,280 + QEN71_RS00930 0.86 -0.7
210,281 - QEN71_RS00930 0.86 -0.4
210,281 - QEN71_RS00930 0.86 +0.2
210,281 - QEN71_RS00930 0.86 +0.7
210,281 - QEN71_RS00930 0.86 -0.2
210,281 - QEN71_RS00930 0.86 +0.5
210,510 - +0.6
210,512 - +1.0
210,612 - +0.6
210,995 - -0.0
211,043 + -0.4
211,076 - QEN71_RS00935 0.12 -0.2
211,369 - QEN71_RS00935 0.35 -0.3

Or see this region's nucleotide sequence