Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03636

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment B, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment B, time point 2
4,061,233	-		MIT1002_03634	0.81	-0.1
4,061,268	-		MIT1002_03634	0.88	+0.1
4,061,268	-		MIT1002_03634	0.88	-2.7
4,061,321	+				+0.7
4,061,321	+				-1.9
4,061,329	-				+0.3
4,061,329	-				+0.2
4,061,432	-				+0.3
4,061,455	-		MIT1002_03635	0.12	+0.2
4,061,500	-		MIT1002_03635	0.17	+0.6
4,061,612	+		MIT1002_03635	0.31	+0.1
4,061,702	+		MIT1002_03635	0.41	+0.2
4,061,712	+		MIT1002_03635	0.43	+0.2
4,061,732	-		MIT1002_03635	0.45	+1.4
4,061,742	+		MIT1002_03635	0.46	+0.1
4,061,742	+		MIT1002_03635	0.46	-0.3
4,061,747	+		MIT1002_03635	0.47	-0.5
4,061,755	-		MIT1002_03635	0.48	-0.4
4,061,803	+		MIT1002_03635	0.54	-0.2
4,061,831	-		MIT1002_03635	0.57	+0.1
4,061,831	-		MIT1002_03635	0.57	+0.0
4,061,855	+		MIT1002_03635	0.60	+1.0
4,061,864	-		MIT1002_03635	0.61	-0.2
4,061,866	-		MIT1002_03635	0.61	+0.4
4,061,900	+		MIT1002_03635	0.65	-0.8
4,061,902	-		MIT1002_03635	0.66	-0.1
4,061,965	+		MIT1002_03635	0.73	-0.4
4,061,966	+		MIT1002_03635	0.73	+0.4
4,061,979	-		MIT1002_03635	0.75	-1.1
4,062,113	-				+0.2
4,062,128	+				-0.0
4,062,148	+				+1.7
4,062,178	+				+2.5
4,062,220	+				-0.1
4,062,300	+				+1.2
4,062,342	-				-1.0
4,062,482	+		MIT1002_03636	0.17	+0.6
4,062,490	-		MIT1002_03636	0.18	+0.7
4,062,490	-		MIT1002_03636	0.18	-0.7
4,062,490	-		MIT1002_03636	0.18	-0.5
4,062,567	-		MIT1002_03636	0.22	-3.5
4,062,578	+		MIT1002_03636	0.23	-0.1
4,062,586	-		MIT1002_03636	0.23	+0.2
4,062,586	-		MIT1002_03636	0.23	+0.5
4,062,588	+		MIT1002_03636	0.24	+0.6
4,062,595	+		MIT1002_03636	0.24	-3.4
4,062,603	-		MIT1002_03636	0.24	-3.0
4,062,609	+		MIT1002_03636	0.25	-1.1
4,062,637	-		MIT1002_03636	0.26	-0.4
4,062,706	-		MIT1002_03636	0.31	-0.1
4,062,718	+		MIT1002_03636	0.31	-0.2
4,062,718	+		MIT1002_03636	0.31	+0.8
4,062,726	-		MIT1002_03636	0.32	+1.5
4,062,726	-		MIT1002_03636	0.32	-0.4
4,062,773	-		MIT1002_03636	0.35	+0.4
4,062,836	-		MIT1002_03636	0.38	+0.0
4,062,866	+		MIT1002_03636	0.40	-0.7
4,062,933	+		MIT1002_03636	0.44	-2.0
4,062,934	-		MIT1002_03636	0.44	+0.9
4,062,956	+		MIT1002_03636	0.46	-0.3
4,062,956	+		MIT1002_03636	0.46	-0.0
4,062,956	+		MIT1002_03636	0.46	-0.3
4,062,959	-		MIT1002_03636	0.46	+0.8
4,062,964	-		MIT1002_03636	0.46	-3.6
4,062,964	-		MIT1002_03636	0.46	-0.3
4,062,964	-		MIT1002_03636	0.46	+0.1
4,062,964	-		MIT1002_03636	0.46	+0.9
4,063,127	+		MIT1002_03636	0.56	-0.4
4,063,127	+		MIT1002_03636	0.56	-0.4
4,063,134	+		MIT1002_03636	0.56	+1.0
4,063,135	+		MIT1002_03636	0.56	-0.8
4,063,208	+		MIT1002_03636	0.61	+0.4
4,063,254	+		MIT1002_03636	0.63	-2.0
4,063,323	-		MIT1002_03636	0.68	-1.0
4,063,327	-		MIT1002_03636	0.68	-0.8
4,063,345	+		MIT1002_03636	0.69	-0.3
4,063,345	+		MIT1002_03636	0.69	-2.0
4,063,345	+		MIT1002_03636	0.69	-0.8
4,063,345	+		MIT1002_03636	0.69	+0.3
4,063,353	-		MIT1002_03636	0.69	-1.6
4,063,411	+		MIT1002_03636	0.73	+0.2
4,063,411	+		MIT1002_03636	0.73	-0.0
4,063,411	+		MIT1002_03636	0.73	-1.3
4,063,411	+		MIT1002_03636	0.73	-0.7
4,063,416	+		MIT1002_03636	0.73	+0.1
4,063,419	-		MIT1002_03636	0.73	-0.0
4,063,424	-		MIT1002_03636	0.74	+0.4
4,063,458	+		MIT1002_03636	0.76	-0.3
4,063,473	+		MIT1002_03636	0.77	-1.1
4,063,479	+		MIT1002_03636	0.77	-0.0
4,063,487	-		MIT1002_03636	0.77	+0.2
4,063,535	+		MIT1002_03636	0.80	-0.2
4,063,551	+		MIT1002_03636	0.81	-1.2
4,063,559	-		MIT1002_03636	0.82	+0.8
4,063,574	-		MIT1002_03636	0.83	+0.1
4,063,574	-		MIT1002_03636	0.83	+0.5
4,063,574	-		MIT1002_03636	0.83	-0.3
4,063,592	+		MIT1002_03636	0.84	-0.1
4,063,592	+		MIT1002_03636	0.84	-0.3
4,063,614	+		MIT1002_03636	0.85	-0.6
4,063,624	+		MIT1002_03636	0.86	-0.2
4,063,630	+		MIT1002_03636	0.86	+0.6
4,063,659	+		MIT1002_03636	0.88	-0.7
4,063,716	+				-0.2
4,063,716	+				-1.1
4,063,716	+				-0.2
4,063,767	+				-0.0
4,063,807	+				+0.4
4,063,824	+				+0.1
4,063,842	+				-0.3
4,063,850	-				-0.4
4,063,857	+				+0.2
4,063,866	+				-0.5
4,063,874	-				+0.7
4,063,874	-				-0.1
4,063,890	-				-0.5
4,063,890	-				-0.5
4,063,902	-				-0.6
4,063,949	-				+0.8
4,064,023	-				-0.1
4,064,025	+				+0.0
4,064,038	-				+0.0
4,064,042	+				+1.2
4,064,049	-				-0.2
4,064,118	+		MIT1002_03637	0.14	-0.6
4,064,141	-		MIT1002_03637	0.16	+0.6
4,064,169	+		MIT1002_03637	0.18	+1.2
4,064,191	-		MIT1002_03637	0.20	+0.7
4,064,199	+		MIT1002_03637	0.20	+0.1
4,064,234	-		MIT1002_03637	0.23	-0.6
4,064,234	-		MIT1002_03637	0.23	-0.8
4,064,242	-		MIT1002_03637	0.24	-1.0
4,064,245	+		MIT1002_03637	0.24	-1.1
4,064,263	-		MIT1002_03637	0.25	-0.1
4,064,282	+		MIT1002_03637	0.27	+0.2
4,064,290	-		MIT1002_03637	0.27	-2.4
4,064,290	-		MIT1002_03637	0.27	+0.3
4,064,290	-		MIT1002_03637	0.27	+0.8
4,064,319	-		MIT1002_03637	0.30	-0.4
4,064,319	-		MIT1002_03637	0.30	-0.5
4,064,319	-		MIT1002_03637	0.30	-1.9
4,064,357	+		MIT1002_03637	0.32	+0.1
4,064,416	+		MIT1002_03637	0.37	-0.5
4,064,507	+		MIT1002_03637	0.44	-1.5
4,064,515	-		MIT1002_03637	0.44	-0.1
4,064,515	-		MIT1002_03637	0.44	-1.1
4,064,516	-		MIT1002_03637	0.45	-0.3
4,064,610	+		MIT1002_03637	0.52	+0.7
4,064,628	-		MIT1002_03637	0.53	-0.0
4,064,628	-		MIT1002_03637	0.53	+0.3
4,064,693	+		MIT1002_03637	0.58	+0.6
4,064,741	+		MIT1002_03637	0.62	+0.1
4,064,743	-		MIT1002_03637	0.62	+0.3
4,064,809	+		MIT1002_03637	0.67	-2.7
4,064,810	-		MIT1002_03637	0.67	+0.3
4,064,810	-		MIT1002_03637	0.67	-2.5
4,064,823	-		MIT1002_03637	0.68	-0.4
4,064,860	+		MIT1002_03637	0.71	-0.8