Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03401

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment B, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment B, time point 2
3,803,988	+				-0.0
3,804,027	+				+0.4
3,804,035	-				-0.1
3,804,041	-				-2.1
3,804,155	-				-3.3
3,804,194	-				-0.7
3,804,223	+				-0.7
3,804,223	+				-0.6
3,804,231	-				-0.5
3,804,280	+		MIT1002_03400	0.11	-0.1
3,804,308	+		MIT1002_03400	0.16	+2.0
3,804,337	+		MIT1002_03400	0.22	+0.4
3,804,345	-		MIT1002_03400	0.24	+0.6
3,804,346	+		MIT1002_03400	0.24	+0.3
3,804,354	-		MIT1002_03400	0.25	+0.3
3,804,518	+		MIT1002_03400	0.58	-2.0
3,804,563	+		MIT1002_03400	0.67	+1.2
3,804,624	+		MIT1002_03400	0.79	+0.3
3,804,632	-		MIT1002_03400	0.81	-0.3
3,804,632	-		MIT1002_03400	0.81	+1.3
3,804,632	-		MIT1002_03400	0.81	-1.8
3,804,637	-		MIT1002_03400	0.82	+0.5
3,804,639	-		MIT1002_03400	0.82	+0.3
3,804,659	-		MIT1002_03400	0.86	+1.2
3,804,702	-				+2.2
3,804,734	-				+1.9
3,804,816	+				+0.6
3,804,825	-				-0.2
3,804,830	-				-3.6
3,804,898	+				-0.4
3,804,898	+				-0.4
3,804,919	+				-0.4
3,804,920	-				+1.1
3,804,920	-				+0.5
3,804,947	-				+0.7
3,804,947	-				+0.1
3,804,968	+				-0.5
3,805,094	+		MIT1002_03401	0.12	-0.4
3,805,122	-		MIT1002_03401	0.15	-0.8
3,805,122	-		MIT1002_03401	0.15	-1.1
3,805,122	-		MIT1002_03401	0.15	-1.2
3,805,136	-		MIT1002_03401	0.16	+1.2
3,805,238	-		MIT1002_03401	0.26	-0.3
3,805,248	-		MIT1002_03401	0.27	+0.3
3,805,248	-		MIT1002_03401	0.27	-0.6
3,805,274	-		MIT1002_03401	0.30	-0.3
3,805,410	+		MIT1002_03401	0.43	+0.2
3,805,445	-		MIT1002_03401	0.46	+0.0
3,805,460	+		MIT1002_03401	0.48	+1.4
3,805,463	+		MIT1002_03401	0.48	+0.4
3,805,468	-		MIT1002_03401	0.49	-0.3
3,805,519	+		MIT1002_03401	0.54	-0.1
3,805,527	+		MIT1002_03401	0.54	+3.5
3,805,527	+		MIT1002_03401	0.54	+1.7
3,805,527	+		MIT1002_03401	0.54	-0.1
3,805,527	+		MIT1002_03401	0.54	+0.7
3,805,556	+		MIT1002_03401	0.57	-0.2
3,805,614	-		MIT1002_03401	0.63	+0.7
3,805,621	+		MIT1002_03401	0.64	-0.8
3,805,643	+		MIT1002_03401	0.66	+0.4
3,805,646	+		MIT1002_03401	0.66	-1.6
3,805,703	+		MIT1002_03401	0.72	-0.4
3,805,878	+		MIT1002_03401	0.89	+0.2
3,805,886	-		MIT1002_03401	0.90	+0.1
3,805,947	+				+0.3
3,805,955	-				+1.2
3,805,955	-				-0.5
3,805,961	+				+0.5
3,805,962	+				-0.2
3,805,962	+				+1.3
3,805,962	+				+0.7
3,805,970	-				-0.2
3,805,970	-				-0.2
3,806,077	+				+0.9
3,806,085	-				+1.1
3,806,085	-				+0.2
3,806,136	+				+0.6
3,806,144	-				+0.1
3,806,145	-				-0.0
3,806,145	-				+0.2
3,806,147	+				-0.7
3,806,155	-				+2.6
3,806,155	-				+0.6
3,806,207	+		MIT1002_03402	0.12	+0.4
3,806,280	-		MIT1002_03402	0.16	-0.1
3,806,307	+		MIT1002_03402	0.18	-1.0
3,806,320	-		MIT1002_03402	0.18	-2.9
3,806,346	+		MIT1002_03402	0.20	-0.3
3,806,407	-		MIT1002_03402	0.24	-3.4
3,806,527	+		MIT1002_03402	0.30	-0.4
3,806,639	-		MIT1002_03402	0.37	-0.1
3,806,649	-		MIT1002_03402	0.37	-2.3
3,806,732	+		MIT1002_03402	0.42	+0.4
3,806,750	-		MIT1002_03402	0.43	-0.3
3,806,753	+		MIT1002_03402	0.44	-1.2
3,806,781	+		MIT1002_03402	0.45	-0.7
3,806,834	-		MIT1002_03402	0.48	+0.2
3,806,862	+		MIT1002_03402	0.50	+0.2
3,806,862	+		MIT1002_03402	0.50	-0.5
3,806,870	-		MIT1002_03402	0.50	-1.9
3,806,870	-		MIT1002_03402	0.50	+1.4
3,806,871	-		MIT1002_03402	0.50	-0.2
3,806,885	-		MIT1002_03402	0.51	-0.2
3,806,885	-		MIT1002_03402	0.51	+0.1
3,806,935	+		MIT1002_03402	0.54	+0.4
3,806,938	+		MIT1002_03402	0.54	+0.4
3,806,942	+		MIT1002_03402	0.54	-0.5
3,806,946	-		MIT1002_03402	0.55	-0.3
3,806,960	-		MIT1002_03402	0.55	-2.8
3,806,970	-		MIT1002_03402	0.56	-1.3