Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03323

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment B, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment B, time point 2
3,709,723	+		MIT1002_03321	0.89	-2.7
3,709,731	-		MIT1002_03321	0.89	-1.2
3,709,794	+				-3.5
3,709,794	+				-2.7
3,709,794	+				-2.6
3,709,795	-				+1.5
3,709,802	-				-3.1
3,709,802	-				-1.7
3,709,802	-				-2.1
3,709,802	-				-1.9
3,709,869	-				-1.2
3,709,877	-				-4.1
3,709,881	+				-1.7
3,709,965	+				-2.0
3,709,975	+				-0.8
3,710,051	+				-1.1
3,710,074	+				-1.2
3,710,089	-				-0.1
3,710,148	-		MIT1002_03322	0.17	-0.3
3,710,162	+		MIT1002_03322	0.19	-1.0
3,710,182	+		MIT1002_03322	0.22	-1.0
3,710,203	-		MIT1002_03322	0.25	+0.4
3,710,281	+		MIT1002_03322	0.36	-0.3
3,710,281	+		MIT1002_03322	0.36	-2.1
3,710,427	+		MIT1002_03322	0.58	-1.5
3,710,427	+		MIT1002_03322	0.58	-0.7
3,710,440	-		MIT1002_03322	0.60	-0.6
3,710,442	+		MIT1002_03322	0.60	-2.2
3,710,660	-				-2.3
3,710,660	-				-2.8
3,710,749	+				-2.0
3,710,749	+				-3.9
3,710,749	+				-1.4
3,710,749	+				-2.0
3,710,757	-				-1.0
3,710,757	-				-0.6
3,710,814	+				+0.6
3,710,817	-				-1.3
3,710,829	-				-3.3
3,710,843	-		MIT1002_03323	0.11	-2.4
3,710,949	-		MIT1002_03323	0.19	-3.4
3,710,966	-		MIT1002_03323	0.20	-1.3
3,711,051	+		MIT1002_03323	0.27	-2.6
3,711,052	+		MIT1002_03323	0.27	-3.4
3,711,053	+		MIT1002_03323	0.27	-2.3
3,711,063	+		MIT1002_03323	0.28	-2.2
3,711,063	+		MIT1002_03323	0.28	-2.8
3,711,112	+		MIT1002_03323	0.32	-1.1
3,711,194	+		MIT1002_03323	0.39	-4.5
3,711,218	+		MIT1002_03323	0.40	-4.5
3,711,226	-		MIT1002_03323	0.41	-2.7
3,711,266	-		MIT1002_03323	0.44	-3.6
3,711,418	+		MIT1002_03323	0.56	-1.7
3,711,517	+		MIT1002_03323	0.64	-3.2
3,711,524	+		MIT1002_03323	0.65	-1.2
3,711,525	-		MIT1002_03323	0.65	-1.2
3,711,525	-		MIT1002_03323	0.65	-2.8
3,711,525	-		MIT1002_03323	0.65	-1.0
3,711,562	+		MIT1002_03323	0.68	-3.1
3,711,562	+		MIT1002_03323	0.68	-3.7
3,711,562	+		MIT1002_03323	0.68	-3.5
3,711,622	+		MIT1002_03323	0.73	-2.8
3,711,648	-		MIT1002_03323	0.75	-2.6
3,711,677	+		MIT1002_03323	0.77	-0.9
3,711,684	+		MIT1002_03323	0.77	-1.4
3,711,685	-		MIT1002_03323	0.78	-0.8
3,711,691	+		MIT1002_03323	0.78	-2.6
3,711,708	-		MIT1002_03323	0.79	-1.9
3,711,715	+		MIT1002_03323	0.80	-3.4
3,711,722	+		MIT1002_03323	0.80	-1.2
3,711,722	+		MIT1002_03323	0.80	-2.6
3,711,722	+		MIT1002_03323	0.80	-1.7
3,711,722	+		MIT1002_03323	0.80	-1.7
3,711,723	-		MIT1002_03323	0.81	-1.3
3,711,723	-		MIT1002_03323	0.81	-0.9
3,711,730	-		MIT1002_03323	0.81	-1.5
3,711,730	-		MIT1002_03323	0.81	-4.0
3,711,732	+		MIT1002_03323	0.81	-1.2
3,711,740	-		MIT1002_03323	0.82	-0.9
3,711,740	-		MIT1002_03323	0.82	-3.1
3,711,740	-		MIT1002_03323	0.82	-1.2
3,711,771	+		MIT1002_03323	0.84	-1.9
3,711,771	+		MIT1002_03323	0.84	-1.8
3,711,859	-				-3.9
3,711,875	-				-1.9
3,711,893	-				-4.4
3,711,940	-				-2.2
3,711,995	+				-2.1
3,711,995	+				-2.1
3,711,995	+				-2.2
3,711,995	+				-1.8
3,712,039	-				-3.4
3,712,110	-				+0.3
3,712,120	-				-0.1
3,712,144	+				+0.7
3,712,205	+				-0.3
3,712,231	-				+0.4
3,712,241	+				+3.1
3,712,247	+				+0.2
3,712,311	+		MIT1002_03324	0.12	+0.9
3,712,364	-		MIT1002_03324	0.16	-1.7
3,712,387	-		MIT1002_03324	0.18	-0.7
3,712,435	+		MIT1002_03324	0.22	-0.2
3,712,543	+		MIT1002_03324	0.30	+1.0
3,712,588	+		MIT1002_03324	0.33	+1.0
3,712,603	+		MIT1002_03324	0.35	-0.5
3,712,665	+		MIT1002_03324	0.39	-0.5
3,712,665	+		MIT1002_03324	0.39	-0.0
3,712,670	+		MIT1002_03324	0.40	-1.1
3,712,673	-		MIT1002_03324	0.40	+0.5
3,712,673	-		MIT1002_03324	0.40	-2.2
3,712,767	-		MIT1002_03324	0.47	-1.7
3,712,767	-		MIT1002_03324	0.47	-0.1
3,712,790	+		MIT1002_03324	0.49	-0.3
3,712,837	+		MIT1002_03324	0.52	+0.8
3,712,845	-		MIT1002_03324	0.53	+2.2
3,712,845	-		MIT1002_03324	0.53	-1.1
3,712,893	-		MIT1002_03324	0.57	+1.2
3,712,914	+		MIT1002_03324	0.58	+0.3
3,712,922	-		MIT1002_03324	0.59	+1.0
3,712,922	-		MIT1002_03324	0.59	+0.3
3,712,952	-		MIT1002_03324	0.61	-0.6