Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02677

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment B, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment B, time point 2
2,976,939	+		MIT1002_02675	0.78	-0.4
2,977,025	-		MIT1002_02675	0.86	+2.2
2,977,050	+		MIT1002_02675	0.88	+0.1
2,977,052	+		MIT1002_02675	0.88	+0.9
2,977,060	-		MIT1002_02675	0.89	-0.5
2,977,063	+		MIT1002_02675	0.89	+0.5
2,977,063	+		MIT1002_02675	0.89	+0.0
2,977,071	-				+0.7
2,977,085	+				+2.2
2,977,100	+				-0.6
2,977,100	+				-0.1
2,977,100	+				-0.6
2,977,108	-				-0.6
2,977,108	-				-0.5
2,977,117	+				-0.2
2,977,125	-				-0.1
2,977,126	-				+0.5
2,977,155	-				-2.2
2,977,211	-				+0.6
2,977,427	+		MIT1002_02676	0.20	+1.3
2,977,504	-		MIT1002_02676	0.44	+0.6
2,977,537	-		MIT1002_02676	0.55	-0.9
2,977,573	-		MIT1002_02676	0.66	-2.4
2,977,614	+		MIT1002_02676	0.79	-0.1
2,977,617	-		MIT1002_02676	0.79	+1.2
2,977,658	-				+0.1
2,977,688	+				+0.4
2,977,688	+				-2.0
2,977,689	+				+0.5
2,977,689	+				+0.3
2,977,689	+				+0.5
2,977,696	-				-0.3
2,977,697	-				-0.1
2,977,697	-				-0.2
2,977,697	-				+1.0
2,977,697	-				-0.5
2,977,857	-				-2.2
2,977,896	+				+0.9
2,977,904	-				-1.3
2,978,050	+				-2.2
2,978,065	-				+0.4
2,978,116	-				-1.4
2,978,210	-		MIT1002_02677	0.11	-0.7
2,978,247	-		MIT1002_02677	0.13	-1.3
2,978,255	+		MIT1002_02677	0.13	-1.3
2,978,374	+		MIT1002_02677	0.18	-1.3
2,978,376	+		MIT1002_02677	0.18	+0.0
2,978,406	+		MIT1002_02677	0.19	+0.5
2,978,535	+		MIT1002_02677	0.24	-0.6
2,978,558	-		MIT1002_02677	0.25	-1.6
2,978,558	-		MIT1002_02677	0.25	+0.3
2,978,590	-		MIT1002_02677	0.26	-0.8
2,978,634	+		MIT1002_02677	0.28	+0.6
2,978,634	+		MIT1002_02677	0.28	-2.2
2,978,649	-		MIT1002_02677	0.29	-2.9
2,978,649	-		MIT1002_02677	0.29	-2.4
2,978,830	+		MIT1002_02677	0.36	-3.0
2,978,858	-		MIT1002_02677	0.37	-1.3
2,978,863	-		MIT1002_02677	0.37	-4.3
2,978,957	-		MIT1002_02677	0.40	-1.1
2,978,985	+		MIT1002_02677	0.42	-1.3
2,979,028	+		MIT1002_02677	0.43	-1.4
2,979,048	-		MIT1002_02677	0.44	-3.2
2,979,050	+		MIT1002_02677	0.44	-0.5
2,979,050	+		MIT1002_02677	0.44	+0.3
2,979,086	-		MIT1002_02677	0.45	-0.8
2,979,086	-		MIT1002_02677	0.45	-1.6
2,979,106	-		MIT1002_02677	0.46	-1.3
2,979,127	-		MIT1002_02677	0.47	-0.8
2,979,201	+		MIT1002_02677	0.50	-1.3
2,979,230	+		MIT1002_02677	0.51	-1.7
2,979,238	-		MIT1002_02677	0.51	-2.3
2,979,250	-		MIT1002_02677	0.52	-3.1
2,979,428	+		MIT1002_02677	0.59	-2.0
2,979,428	+		MIT1002_02677	0.59	-2.0
2,979,428	+		MIT1002_02677	0.59	-1.3
2,979,428	+		MIT1002_02677	0.59	-3.5
2,979,428	+		MIT1002_02677	0.59	-4.6
2,979,436	-		MIT1002_02677	0.59	-1.0
2,979,436	-		MIT1002_02677	0.59	+0.1
2,979,436	-		MIT1002_02677	0.59	-2.2
2,979,436	-		MIT1002_02677	0.59	-1.7
2,979,436	-		MIT1002_02677	0.59	-2.1
2,979,436	-		MIT1002_02677	0.59	-1.2
2,979,436	-		MIT1002_02677	0.59	-1.5
2,979,436	-		MIT1002_02677	0.59	-2.2
2,979,436	-		MIT1002_02677	0.59	-1.3
2,979,454	-		MIT1002_02677	0.60	-0.7
2,979,456	-		MIT1002_02677	0.60	-0.9
2,979,464	-		MIT1002_02677	0.60	-2.2
2,979,464	-		MIT1002_02677	0.60	-2.6
2,979,553	-		MIT1002_02677	0.64	-2.7
2,979,570	-		MIT1002_02677	0.64	-2.3
2,979,579	+		MIT1002_02677	0.65	-1.6
2,979,589	+		MIT1002_02677	0.65	+0.1
2,979,589	+		MIT1002_02677	0.65	-2.5
2,979,597	-		MIT1002_02677	0.65	+0.0
2,979,611	-		MIT1002_02677	0.66	-1.3
2,979,629	+		MIT1002_02677	0.67	-1.4
2,979,629	+		MIT1002_02677	0.67	-1.0
2,979,637	-		MIT1002_02677	0.67	-0.4
2,979,645	+		MIT1002_02677	0.67	-2.0
2,979,646	-		MIT1002_02677	0.67	-0.6
2,979,678	+		MIT1002_02677	0.68	+2.0
2,979,686	-		MIT1002_02677	0.69	-1.9
2,979,686	-		MIT1002_02677	0.69	-2.0
2,979,709	+		MIT1002_02677	0.70	-1.5
2,979,709	+		MIT1002_02677	0.70	-2.0
2,979,709	+		MIT1002_02677	0.70	-2.3
2,979,717	-		MIT1002_02677	0.70	-2.1
2,979,717	-		MIT1002_02677	0.70	-0.2
2,979,717	-		MIT1002_02677	0.70	+0.3
2,979,717	-		MIT1002_02677	0.70	-0.7
2,979,717	-		MIT1002_02677	0.70	-2.4
2,979,717	-		MIT1002_02677	0.70	-0.4
2,979,773	-		MIT1002_02677	0.72	-2.4
2,979,830	+		MIT1002_02677	0.74	-4.0
2,979,853	+		MIT1002_02677	0.75	-2.3
2,979,853	+		MIT1002_02677	0.75	-2.7
2,979,881	+		MIT1002_02677	0.76	-0.1
2,979,881	+		MIT1002_02677	0.76	-2.1
2,979,889	-		MIT1002_02677	0.77	-0.8
2,979,920	-		MIT1002_02677	0.78	+0.8
2,979,961	+		MIT1002_02677	0.79	-1.8
2,979,966	+		MIT1002_02677	0.80	-1.1
2,979,966	+		MIT1002_02677	0.80	-1.4
2,980,038	-		MIT1002_02677	0.82	+0.0
2,980,104	-		MIT1002_02677	0.85	-1.0
2,980,204	-		MIT1002_02677	0.89	-4.2
2,980,204	-		MIT1002_02677	0.89	-2.4
2,980,233	+				-0.4
2,980,241	-				-1.6
2,980,245	-				-0.8
2,980,263	-				-2.6
2,980,263	-				-0.9
2,980,289	-				-1.0
2,980,296	+				-0.3
2,980,296	+				-1.1
2,980,301	+				-2.0
2,980,301	+				+0.4
2,980,304	-				-0.7
2,980,309	-				+0.0
2,980,311	-				-1.2
2,980,342	+				-0.7
2,980,370	+				-2.2
2,980,512	+				+1.9
2,980,521	-				+0.1
2,980,567	+				-3.0
2,980,567	+				-0.8
2,980,569	+				-0.9
2,980,717	-				-0.0
2,980,717	-				-0.6
2,980,747	+				+0.6
2,980,755	-				-0.3
2,980,755	-				-0.2
2,980,830	+		MIT1002_02678	0.12	+0.0
2,980,836	+		MIT1002_02678	0.13	+0.0
2,980,916	+		MIT1002_02678	0.23	-0.7
2,980,935	-		MIT1002_02678	0.26	+0.2
2,980,990	-		MIT1002_02678	0.33	-0.5
2,981,087	+		MIT1002_02678	0.46	+0.1
2,981,087	+		MIT1002_02678	0.46	-0.6
2,981,087	+		MIT1002_02678	0.46	+0.6
2,981,095	-		MIT1002_02678	0.47	+0.4
2,981,104	-		MIT1002_02678	0.48	+0.8
2,981,255	+		MIT1002_02678	0.68	-2.2
2,981,302	+		MIT1002_02678	0.74	-0.2
2,981,334	+		MIT1002_02678	0.79	-0.2
2,981,386	+		MIT1002_02678	0.86	-1.6
2,981,411	-		MIT1002_02678	0.89	-0.1
2,981,432	-				-2.3
2,981,433	-				+1.0
2,981,447	-				-0.2
2,981,464	+				-0.6
2,981,472	-				-1.0