Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02542

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment B, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment B, time point 2
2,836,001	+		MIT1002_02541	0.22	+0.5
2,836,001	+		MIT1002_02541	0.22	-0.6
2,836,009	-		MIT1002_02541	0.23	+0.3
2,836,031	-		MIT1002_02541	0.25	-0.2
2,836,045	+		MIT1002_02541	0.26	+0.5
2,836,046	-		MIT1002_02541	0.26	+0.3
2,836,070	-		MIT1002_02541	0.28	-1.2
2,836,084	+		MIT1002_02541	0.29	-0.2
2,836,085	+		MIT1002_02541	0.29	+1.0
2,836,150	+		MIT1002_02541	0.34	+0.9
2,836,150	+		MIT1002_02541	0.34	-0.5
2,836,238	+		MIT1002_02541	0.41	+0.4
2,836,246	-		MIT1002_02541	0.41	-0.4
2,836,307	+		MIT1002_02541	0.46	-0.4
2,836,307	+		MIT1002_02541	0.46	-0.7
2,836,307	+		MIT1002_02541	0.46	-1.2
2,836,315	-		MIT1002_02541	0.47	-0.6
2,836,340	+		MIT1002_02541	0.49	+0.7
2,836,348	-		MIT1002_02541	0.49	+1.2
2,836,446	-		MIT1002_02541	0.57	-0.4
2,836,538	+		MIT1002_02541	0.64	-0.4
2,836,641	+		MIT1002_02541	0.72	+1.0
2,836,655	+		MIT1002_02541	0.74	-0.6
2,836,663	+		MIT1002_02541	0.74	-1.2
2,836,684	+		MIT1002_02541	0.76	-0.1
2,836,702	+		MIT1002_02541	0.77	-0.4
2,836,703	+		MIT1002_02541	0.77	+0.4
2,836,711	-		MIT1002_02541	0.78	+0.5
2,836,741	+		MIT1002_02541	0.80	+0.1
2,836,811	+		MIT1002_02541	0.86	-2.1
2,836,811	+		MIT1002_02541	0.86	-0.3
2,836,859	+		MIT1002_02541	0.90	-0.3
2,836,862	-		MIT1002_02541	0.90	+0.7
2,836,867	-				+0.1
2,836,867	-				-0.2
2,836,893	-				-0.6
2,837,033	+				-0.5
2,837,041	-				+0.5
2,837,135	+				+0.4
2,837,221	+		MIT1002_02542	0.11	+0.3
2,837,380	-		MIT1002_02542	0.19	-1.6
2,837,401	-		MIT1002_02542	0.20	+0.9
2,837,420	+		MIT1002_02542	0.21	-2.2
2,837,420	+		MIT1002_02542	0.21	-1.2
2,837,439	-		MIT1002_02542	0.22	+0.3
2,837,482	+		MIT1002_02542	0.24	-0.2
2,837,482	+		MIT1002_02542	0.24	-1.2
2,837,485	-		MIT1002_02542	0.24	+0.8
2,837,521	+		MIT1002_02542	0.25	-0.6
2,837,546	+		MIT1002_02542	0.27	-0.2
2,837,636	+		MIT1002_02542	0.31	-0.7
2,837,770	+		MIT1002_02542	0.38	-0.2
2,837,770	+		MIT1002_02542	0.38	+0.5
2,837,771	-		MIT1002_02542	0.38	+1.0
2,837,825	-		MIT1002_02542	0.40	+0.4
2,837,831	-		MIT1002_02542	0.41	-0.4
2,837,859	-		MIT1002_02542	0.42	-0.0
2,837,906	-		MIT1002_02542	0.44	-0.8
2,838,039	-		MIT1002_02542	0.51	-2.0
2,838,039	-		MIT1002_02542	0.51	+0.5
2,838,059	+		MIT1002_02542	0.52	-0.7
2,838,120	-		MIT1002_02542	0.55	-0.2
2,838,174	+		MIT1002_02542	0.57	-1.1
2,838,192	-		MIT1002_02542	0.58	+0.5
2,838,192	-		MIT1002_02542	0.58	-0.6
2,838,202	-		MIT1002_02542	0.58	-0.0
2,838,207	+		MIT1002_02542	0.59	-0.6
2,838,207	+		MIT1002_02542	0.59	-1.4
2,838,207	+		MIT1002_02542	0.59	+1.2
2,838,215	-		MIT1002_02542	0.59	-0.1
2,838,235	+		MIT1002_02542	0.60	+0.8
2,838,236	-		MIT1002_02542	0.60	-1.7
2,838,236	-		MIT1002_02542	0.60	+0.6
2,838,236	-		MIT1002_02542	0.60	-0.1
2,838,236	-		MIT1002_02542	0.60	+0.8
2,838,236	-		MIT1002_02542	0.60	+0.2
2,838,269	+		MIT1002_02542	0.62	+0.3
2,838,305	-		MIT1002_02542	0.63	+0.6
2,838,361	+		MIT1002_02542	0.66	+0.4
2,838,369	-		MIT1002_02542	0.67	-1.0
2,838,447	-		MIT1002_02542	0.70	-1.8
2,838,499	-		MIT1002_02542	0.73	+0.1
2,838,513	+		MIT1002_02542	0.74	-0.2
2,838,520	-		MIT1002_02542	0.74	+0.5
2,838,548	+		MIT1002_02542	0.75	-0.1
2,838,548	+		MIT1002_02542	0.75	-1.4
2,838,548	+		MIT1002_02542	0.75	-0.1
2,838,556	-		MIT1002_02542	0.76	-0.2
2,838,556	-		MIT1002_02542	0.76	-1.4
2,838,556	-		MIT1002_02542	0.76	-1.4
2,838,556	-		MIT1002_02542	0.76	-1.0
2,838,556	-		MIT1002_02542	0.76	-1.4
2,838,581	-		MIT1002_02542	0.77	-0.7
2,838,581	-		MIT1002_02542	0.77	+0.1
2,838,590	+		MIT1002_02542	0.77	-1.7
2,838,621	-		MIT1002_02542	0.79	+0.9
2,838,704	+		MIT1002_02542	0.83	+0.4
2,838,704	+		MIT1002_02542	0.83	+0.1
2,838,821	+		MIT1002_02542	0.88	+0.1
2,838,821	+		MIT1002_02542	0.88	+0.9
2,838,826	+		MIT1002_02542	0.89	-0.7
2,838,826	+		MIT1002_02542	0.89	-2.1
2,838,829	-		MIT1002_02542	0.89	-0.2
2,838,834	-		MIT1002_02542	0.89	-1.3
2,838,839	-		MIT1002_02542	0.89	-0.2
2,838,849	+		MIT1002_02542	0.90	-0.6
2,838,849	+		MIT1002_02542	0.90	+0.1
2,838,849	+		MIT1002_02542	0.90	-0.1
2,838,849	+		MIT1002_02542	0.90	-0.4
2,838,857	-				-1.0
2,838,857	-				+1.0
2,838,857	-				+1.9
2,838,857	-				-0.8
2,838,915	+				-0.3
2,838,915	+				-0.0
2,838,923	-				-0.5
2,839,092	-		MIT1002_02543	0.14	-2.8
2,839,157	+		MIT1002_02543	0.62	-1.0
2,839,255	-		MIT1002_02544	0.10	+0.6
2,839,286	-		MIT1002_02544	0.14	-0.3
2,839,307	-		MIT1002_02544	0.17	-0.6
2,839,360	+		MIT1002_02544	0.25	-1.9
2,839,360	+		MIT1002_02544	0.25	-0.2
2,839,368	-		MIT1002_02544	0.26	-1.2
2,839,368	-		MIT1002_02544	0.26	+1.0
2,839,519	+		MIT1002_02544	0.47	+1.8
2,839,519	+		MIT1002_02544	0.47	-1.0
2,839,528	+		MIT1002_02544	0.48	+1.4
2,839,551	+		MIT1002_02544	0.51	-0.2
2,839,555	-		MIT1002_02544	0.52	+0.4
2,839,591	-		MIT1002_02544	0.56	+1.1
2,839,624	+		MIT1002_02544	0.61	-0.4
2,839,650	+		MIT1002_02544	0.65	+0.5
2,839,730	+		MIT1002_02544	0.76	+0.6
2,839,730	+		MIT1002_02544	0.76	-0.2
2,839,730	+		MIT1002_02544	0.76	+0.4
2,839,738	-		MIT1002_02544	0.77	-1.7
2,839,738	-		MIT1002_02544	0.77	-0.0
2,839,753	-		MIT1002_02544	0.79	+0.2
2,839,761	+		MIT1002_02544	0.80	+0.6
2,839,826	+		MIT1002_02544	0.89	-0.3
2,839,844	-				+1.5
2,839,848	-				-0.5
2,839,852	+				-0.7
2,839,939	+				-0.2
2,839,982	+				+0.2
2,840,018	-		MIT1002_02545	0.13	+0.9