Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02428

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment B, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment B, time point 2
2,709,635	+		MIT1002_02426	0.54	-3.1
2,709,635	+		MIT1002_02426	0.54	+1.2
2,709,638	-		MIT1002_02426	0.54	-0.8
2,709,643	-		MIT1002_02426	0.55	+0.2
2,709,645	+		MIT1002_02426	0.55	+0.3
2,709,664	+		MIT1002_02426	0.57	-0.1
2,709,672	-		MIT1002_02426	0.58	+0.6
2,709,688	-		MIT1002_02426	0.59	+0.6
2,709,692	+		MIT1002_02426	0.60	+0.2
2,709,697	+		MIT1002_02426	0.60	+0.5
2,709,699	+		MIT1002_02426	0.60	-0.0
2,709,699	+		MIT1002_02426	0.60	+0.1
2,709,705	-		MIT1002_02426	0.61	+0.3
2,709,705	-		MIT1002_02426	0.61	-1.0
2,709,707	-		MIT1002_02426	0.61	-0.6
2,709,707	-		MIT1002_02426	0.61	+0.3
2,709,707	-		MIT1002_02426	0.61	+0.1
2,709,707	-		MIT1002_02426	0.61	-0.2
2,709,815	-		MIT1002_02426	0.72	+1.0
2,709,857	-		MIT1002_02426	0.76	+1.4
2,709,885	+		MIT1002_02426	0.79	+0.9
2,709,893	-		MIT1002_02426	0.80	-0.1
2,709,893	-		MIT1002_02426	0.80	-1.2
2,710,025	-				-0.4
2,710,027	+				-1.3
2,710,037	+				+0.1
2,710,092	-				+0.0
2,710,119	+				+1.4
2,710,127	-				+1.5
2,710,127	-				+0.4
2,710,127	-				+0.2
2,710,140	-				-0.4
2,710,161	-		MIT1002_02427	0.14	+0.3
2,710,197	+		MIT1002_02427	0.22	-0.7
2,710,219	+		MIT1002_02427	0.26	+0.1
2,710,269	+		MIT1002_02427	0.36	-0.8
2,710,276	-		MIT1002_02427	0.38	+2.3
2,710,293	+		MIT1002_02427	0.41	-0.4
2,710,406	-		MIT1002_02427	0.65	+1.3
2,710,406	-		MIT1002_02427	0.65	-0.7
2,710,413	+		MIT1002_02427	0.66	-0.5
2,710,527	-		MIT1002_02427	0.90	+1.5
2,710,575	+				+0.5
2,710,650	+				-0.5
2,710,658	-				+2.0
2,710,676	+				-3.0
2,710,684	-				-0.5
2,710,707	+		MIT1002_02428	0.10	-0.6
2,710,746	+		MIT1002_02428	0.13	+1.4
2,710,754	-		MIT1002_02428	0.14	+0.3
2,710,787	-		MIT1002_02428	0.16	-2.2
2,710,792	+		MIT1002_02428	0.17	+0.1
2,710,818	+		MIT1002_02428	0.19	+1.0
2,710,862	+		MIT1002_02428	0.22	-0.6
2,710,915	-		MIT1002_02428	0.26	-0.2
2,711,076	+		MIT1002_02428	0.39	+0.2
2,711,089	-		MIT1002_02428	0.40	-0.7
2,711,101	+		MIT1002_02428	0.40	+0.0
2,711,109	-		MIT1002_02428	0.41	+0.9
2,711,109	-		MIT1002_02428	0.41	+0.3
2,711,142	+		MIT1002_02428	0.44	-0.4
2,711,144	-		MIT1002_02428	0.44	-0.1
2,711,187	-		MIT1002_02428	0.47	-0.5
2,711,311	-		MIT1002_02428	0.57	+1.2
2,711,326	+		MIT1002_02428	0.58	-0.4
2,711,326	+		MIT1002_02428	0.58	-2.3
2,711,334	-		MIT1002_02428	0.58	-0.7
2,711,421	+		MIT1002_02428	0.65	-0.4
2,711,429	-		MIT1002_02428	0.66	+0.8
2,711,684	-		MIT1002_02428	0.85	-0.9
2,711,836	+				+0.4
2,711,842	-				-0.4
2,711,844	-				-0.6
2,711,844	-				-0.9
2,711,898	+				+0.0
2,711,906	-				+1.0
2,711,907	-				-0.0
2,711,991	+				+1.7
2,711,997	-				-4.4
2,712,119	-				-2.2
2,712,215	+		MIT1002_02429	0.19	-3.4
2,712,231	+		MIT1002_02429	0.21	-2.7
2,712,246	-		MIT1002_02429	0.22	-2.8
2,712,266	-		MIT1002_02429	0.24	-1.4
2,712,300	-		MIT1002_02429	0.28	-2.8
2,712,304	+		MIT1002_02429	0.28	-4.0
2,712,312	+		MIT1002_02429	0.29	-1.9
2,712,312	+		MIT1002_02429	0.29	-4.7
2,712,312	+		MIT1002_02429	0.29	-4.9
2,712,312	+		MIT1002_02429	0.29	-2.1
2,712,312	-		MIT1002_02429	0.29	-4.8
2,712,320	-		MIT1002_02429	0.30	-3.6
2,712,348	-		MIT1002_02429	0.32	-3.3
2,712,594	+		MIT1002_02429	0.57	-3.3
2,712,594	+		MIT1002_02429	0.57	-2.1
2,712,610	-		MIT1002_02429	0.58	-2.8
2,712,623	+		MIT1002_02429	0.59	-3.9
2,712,661	+		MIT1002_02429	0.63	-3.9
2,712,661	+		MIT1002_02429	0.63	-3.4
2,712,671	+		MIT1002_02429	0.64	-1.1
2,712,671	+		MIT1002_02429	0.64	-4.7
2,712,679	-		MIT1002_02429	0.65	-3.1