Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01038

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment B, time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_01037 and MIT1002_01038 are separated by 15 nucleotidesMIT1002_01038 and MIT1002_01039 are separated by 202 nucleotidesMIT1002_01039 and MIT1002_01040 are separated by 2 nucleotides MIT1002_01037: MIT1002_01037 - Chemotaxis protein CheV, at 1,148,001 to 1,148,930 _01037 MIT1002_01038: MIT1002_01038 - Chemotaxis protein methyltransferase, at 1,148,946 to 1,149,776 _01038 MIT1002_01039: MIT1002_01039 - Putative proximal rod protein, at 1,149,979 to 1,150,413 _01039 MIT1002_01040: MIT1002_01040 - Putative proximal rod protein, at 1,150,416 to 1,150,838 _01040 Position (kb) 1148 1149 1150Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1147.981 kb on + strandat 1147.981 kb on + strandat 1147.986 kb on + strandat 1147.994 kb on - strandat 1147.994 kb on - strandat 1148.028 kb on - strandat 1148.079 kb on - strandat 1148.182 kb on - strand, within MIT1002_01037at 1148.207 kb on - strand, within MIT1002_01037at 1148.220 kb on + strand, within MIT1002_01037at 1148.261 kb on + strand, within MIT1002_01037at 1148.286 kb on + strand, within MIT1002_01037at 1148.294 kb on - strand, within MIT1002_01037at 1148.301 kb on + strand, within MIT1002_01037at 1148.301 kb on + strand, within MIT1002_01037at 1148.301 kb on + strand, within MIT1002_01037at 1148.301 kb on + strand, within MIT1002_01037at 1148.309 kb on - strand, within MIT1002_01037at 1148.309 kb on - strand, within MIT1002_01037at 1148.328 kb on - strand, within MIT1002_01037at 1148.370 kb on + strand, within MIT1002_01037at 1148.378 kb on - strand, within MIT1002_01037at 1148.558 kb on + strand, within MIT1002_01037at 1148.558 kb on + strand, within MIT1002_01037at 1148.566 kb on - strand, within MIT1002_01037at 1148.632 kb on + strand, within MIT1002_01037at 1148.640 kb on + strand, within MIT1002_01037at 1148.648 kb on - strand, within MIT1002_01037at 1148.672 kb on + strand, within MIT1002_01037at 1148.678 kb on - strand, within MIT1002_01037at 1148.690 kb on - strand, within MIT1002_01037at 1148.692 kb on + strand, within MIT1002_01037at 1148.692 kb on + strand, within MIT1002_01037at 1148.692 kb on + strand, within MIT1002_01037at 1148.692 kb on + strand, within MIT1002_01037at 1148.698 kb on - strand, within MIT1002_01037at 1148.698 kb on - strand, within MIT1002_01037at 1148.700 kb on - strand, within MIT1002_01037at 1148.713 kb on - strand, within MIT1002_01037at 1148.737 kb on + strand, within MIT1002_01037at 1148.737 kb on + strand, within MIT1002_01037at 1148.737 kb on + strand, within MIT1002_01037at 1148.737 kb on + strand, within MIT1002_01037at 1148.737 kb on + strand, within MIT1002_01037at 1148.737 kb on + strand, within MIT1002_01037at 1148.737 kb on + strand, within MIT1002_01037at 1148.737 kb on + strand, within MIT1002_01037at 1148.737 kb on + strand, within MIT1002_01037at 1148.737 kb on + strand, within MIT1002_01037at 1148.737 kb on + strand, within MIT1002_01037at 1148.745 kb on - strand, within MIT1002_01037at 1148.745 kb on - strand, within MIT1002_01037at 1148.745 kb on - strand, within MIT1002_01037at 1148.745 kb on - strand, within MIT1002_01037at 1148.745 kb on - strand, within MIT1002_01037at 1148.745 kb on - strand, within MIT1002_01037at 1148.745 kb on - strand, within MIT1002_01037at 1148.745 kb on - strand, within MIT1002_01037at 1148.745 kb on - strand, within MIT1002_01037at 1148.745 kb on - strand, within MIT1002_01037at 1148.745 kb on - strand, within MIT1002_01037at 1148.745 kb on - strand, within MIT1002_01037at 1148.745 kb on - strand, within MIT1002_01037at 1148.745 kb on - strand, within MIT1002_01037at 1148.793 kb on + strand, within MIT1002_01037at 1148.815 kb on - strand, within MIT1002_01037at 1148.817 kb on + strand, within MIT1002_01037at 1148.817 kb on + strand, within MIT1002_01037at 1148.820 kb on - strand, within MIT1002_01037at 1148.820 kb on - strand, within MIT1002_01037at 1148.820 kb on - strand, within MIT1002_01037at 1148.898 kb on + strandat 1148.898 kb on + strandat 1149.066 kb on + strand, within MIT1002_01038at 1149.077 kb on + strand, within MIT1002_01038at 1149.322 kb on - strand, within MIT1002_01038at 1149.340 kb on + strand, within MIT1002_01038at 1149.340 kb on + strand, within MIT1002_01038at 1149.340 kb on + strand, within MIT1002_01038at 1149.456 kb on + strand, within MIT1002_01038at 1149.535 kb on + strand, within MIT1002_01038at 1149.565 kb on + strand, within MIT1002_01038at 1149.565 kb on + strand, within MIT1002_01038at 1149.565 kb on + strand, within MIT1002_01038at 1149.565 kb on + strand, within MIT1002_01038at 1149.565 kb on + strand, within MIT1002_01038at 1149.565 kb on + strand, within MIT1002_01038at 1149.573 kb on - strand, within MIT1002_01038at 1149.573 kb on - strand, within MIT1002_01038at 1149.573 kb on - strand, within MIT1002_01038at 1149.573 kb on - strand, within MIT1002_01038at 1149.573 kb on - strand, within MIT1002_01038at 1149.671 kb on + strand, within MIT1002_01038at 1149.671 kb on + strand, within MIT1002_01038at 1149.671 kb on + strand, within MIT1002_01038at 1149.679 kb on - strand, within MIT1002_01038at 1149.679 kb on - strand, within MIT1002_01038at 1149.679 kb on - strand, within MIT1002_01038at 1149.702 kb on + strandat 1149.738 kb on + strandat 1149.748 kb on + strandat 1149.748 kb on + strandat 1149.971 kb on - strandat 1150.413 kb on - strandat 1150.475 kb on + strand, within MIT1002_01040at 1150.475 kb on + strand, within MIT1002_01040at 1150.483 kb on - strand, within MIT1002_01040at 1150.579 kb on - strand, within MIT1002_01040at 1150.595 kb on + strand, within MIT1002_01040at 1150.611 kb on - strand, within MIT1002_01040at 1150.644 kb on - strand, within MIT1002_01040at 1150.658 kb on + strand, within MIT1002_01040at 1150.728 kb on - strand, within MIT1002_01040

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment B, time point 2
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1,147,981 + +0.9
1,147,981 + +0.9
1,147,986 + -0.3
1,147,994 - -0.4
1,147,994 - +0.4
1,148,028 - -0.2
1,148,079 - +0.4
1,148,182 - MIT1002_01037 0.19 -0.1
1,148,207 - MIT1002_01037 0.22 -0.3
1,148,220 + MIT1002_01037 0.24 -0.6
1,148,261 + MIT1002_01037 0.28 -0.3
1,148,286 + MIT1002_01037 0.31 -1.2
1,148,294 - MIT1002_01037 0.32 +1.7
1,148,301 + MIT1002_01037 0.32 +1.8
1,148,301 + MIT1002_01037 0.32 +0.6
1,148,301 + MIT1002_01037 0.32 -0.2
1,148,301 + MIT1002_01037 0.32 -0.8
1,148,309 - MIT1002_01037 0.33 +0.9
1,148,309 - MIT1002_01037 0.33 -0.6
1,148,328 - MIT1002_01037 0.35 -0.3
1,148,370 + MIT1002_01037 0.40 -0.1
1,148,378 - MIT1002_01037 0.41 +0.2
1,148,558 + MIT1002_01037 0.60 +0.2
1,148,558 + MIT1002_01037 0.60 -0.8
1,148,566 - MIT1002_01037 0.61 -0.7
1,148,632 + MIT1002_01037 0.68 -0.8
1,148,640 + MIT1002_01037 0.69 +0.5
1,148,648 - MIT1002_01037 0.70 -0.3
1,148,672 + MIT1002_01037 0.72 +0.0
1,148,678 - MIT1002_01037 0.73 -0.1
1,148,690 - MIT1002_01037 0.74 -0.0
1,148,692 + MIT1002_01037 0.74 +0.3
1,148,692 + MIT1002_01037 0.74 -0.6
1,148,692 + MIT1002_01037 0.74 -0.3
1,148,692 + MIT1002_01037 0.74 -1.1
1,148,698 - MIT1002_01037 0.75 +1.3
1,148,698 - MIT1002_01037 0.75 -0.6
1,148,700 - MIT1002_01037 0.75 +2.5
1,148,713 - MIT1002_01037 0.77 +0.6
1,148,737 + MIT1002_01037 0.79 +1.3
1,148,737 + MIT1002_01037 0.79 -1.7
1,148,737 + MIT1002_01037 0.79 -0.4
1,148,737 + MIT1002_01037 0.79 -0.6
1,148,737 + MIT1002_01037 0.79 +0.1
1,148,737 + MIT1002_01037 0.79 -0.2
1,148,737 + MIT1002_01037 0.79 +0.6
1,148,737 + MIT1002_01037 0.79 -1.0
1,148,737 + MIT1002_01037 0.79 -0.5
1,148,737 + MIT1002_01037 0.79 -0.3
1,148,737 + MIT1002_01037 0.79 -1.8
1,148,745 - MIT1002_01037 0.80 +0.6
1,148,745 - MIT1002_01037 0.80 +0.4
1,148,745 - MIT1002_01037 0.80 -0.4
1,148,745 - MIT1002_01037 0.80 -1.4
1,148,745 - MIT1002_01037 0.80 +0.3
1,148,745 - MIT1002_01037 0.80 -0.1
1,148,745 - MIT1002_01037 0.80 +1.2
1,148,745 - MIT1002_01037 0.80 -0.2
1,148,745 - MIT1002_01037 0.80 -0.1
1,148,745 - MIT1002_01037 0.80 -1.8
1,148,745 - MIT1002_01037 0.80 +0.0
1,148,745 - MIT1002_01037 0.80 +0.5
1,148,745 - MIT1002_01037 0.80 +1.9
1,148,745 - MIT1002_01037 0.80 +0.7
1,148,793 + MIT1002_01037 0.85 -2.0
1,148,815 - MIT1002_01037 0.88 -0.3
1,148,817 + MIT1002_01037 0.88 -0.8
1,148,817 + MIT1002_01037 0.88 -0.4
1,148,820 - MIT1002_01037 0.88 -0.4
1,148,820 - MIT1002_01037 0.88 +2.0
1,148,820 - MIT1002_01037 0.88 -1.4
1,148,898 + +1.0
1,148,898 + -1.0
1,149,066 + MIT1002_01038 0.14 -0.0
1,149,077 + MIT1002_01038 0.16 -1.1
1,149,322 - MIT1002_01038 0.45 -0.2
1,149,340 + MIT1002_01038 0.47 +1.6
1,149,340 + MIT1002_01038 0.47 -0.6
1,149,340 + MIT1002_01038 0.47 -0.1
1,149,456 + MIT1002_01038 0.61 -1.3
1,149,535 + MIT1002_01038 0.71 +1.3
1,149,565 + MIT1002_01038 0.74 +3.4
1,149,565 + MIT1002_01038 0.74 +0.1
1,149,565 + MIT1002_01038 0.74 -1.2
1,149,565 + MIT1002_01038 0.74 +0.5
1,149,565 + MIT1002_01038 0.74 -0.3
1,149,565 + MIT1002_01038 0.74 -0.6
1,149,573 - MIT1002_01038 0.75 +0.1
1,149,573 - MIT1002_01038 0.75 +0.0
1,149,573 - MIT1002_01038 0.75 -1.5
1,149,573 - MIT1002_01038 0.75 +1.4
1,149,573 - MIT1002_01038 0.75 -0.7
1,149,671 + MIT1002_01038 0.87 +0.7
1,149,671 + MIT1002_01038 0.87 -0.6
1,149,671 + MIT1002_01038 0.87 -0.1
1,149,679 - MIT1002_01038 0.88 -0.6
1,149,679 - MIT1002_01038 0.88 -0.0
1,149,679 - MIT1002_01038 0.88 +0.3
1,149,702 + -0.0
1,149,738 + +1.0
1,149,748 + -0.4
1,149,748 + -2.8
1,149,971 - +0.6
1,150,413 - +0.5
1,150,475 + MIT1002_01040 0.14 -0.0
1,150,475 + MIT1002_01040 0.14 +0.9
1,150,483 - MIT1002_01040 0.16 +1.6
1,150,579 - MIT1002_01040 0.39 +0.5
1,150,595 + MIT1002_01040 0.42 +0.4
1,150,611 - MIT1002_01040 0.46 +1.8
1,150,644 - MIT1002_01040 0.54 +0.1
1,150,658 + MIT1002_01040 0.57 +1.4
1,150,728 - MIT1002_01040 0.74 -0.6

Or see this region's nucleotide sequence