Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00900

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment B, time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00899 and MIT1002_00900 are separated by 114 nucleotidesMIT1002_00900 and MIT1002_00901 are separated by 34 nucleotides MIT1002_00899: MIT1002_00899 - hypothetical protein, at 993,912 to 995,333 _00899 MIT1002_00900: MIT1002_00900 - Na(+)/serine-threonine symporter, at 995,448 to 996,668 _00900 MIT1002_00901: MIT1002_00901 - Formimidoylglutamase, at 996,703 to 997,671 _00901 MIT1002_00902: MIT1002_00902 - Imidazolonepropionase, at 997,664 to 998,923 _00902 Position (kb) 995 996 997Strain fitness (log2 ratio) -2 -1 0 1 2at 994.603 kb on + strand, within MIT1002_00899at 994.644 kb on + strand, within MIT1002_00899at 994.649 kb on + strand, within MIT1002_00899at 994.652 kb on - strand, within MIT1002_00899at 994.776 kb on + strand, within MIT1002_00899at 994.782 kb on + strand, within MIT1002_00899at 994.784 kb on - strand, within MIT1002_00899at 994.857 kb on - strand, within MIT1002_00899at 994.891 kb on + strand, within MIT1002_00899at 994.942 kb on + strand, within MIT1002_00899at 995.029 kb on + strand, within MIT1002_00899at 995.037 kb on - strand, within MIT1002_00899at 995.065 kb on + strand, within MIT1002_00899at 995.073 kb on - strand, within MIT1002_00899at 995.083 kb on - strand, within MIT1002_00899at 995.086 kb on + strand, within MIT1002_00899at 995.200 kb on - strandat 995.204 kb on + strandat 995.212 kb on - strandat 995.267 kb on - strandat 995.279 kb on + strandat 995.292 kb on - strandat 995.335 kb on + strandat 995.377 kb on + strandat 995.395 kb on + strandat 995.407 kb on + strandat 995.408 kb on - strandat 995.409 kb on - strandat 995.415 kb on - strandat 995.415 kb on - strandat 995.415 kb on - strandat 995.415 kb on - strandat 995.464 kb on + strandat 995.505 kb on - strandat 995.722 kb on - strand, within MIT1002_00900at 995.780 kb on - strand, within MIT1002_00900at 995.780 kb on - strand, within MIT1002_00900at 995.780 kb on - strand, within MIT1002_00900at 995.788 kb on + strand, within MIT1002_00900at 995.796 kb on - strand, within MIT1002_00900at 995.796 kb on - strand, within MIT1002_00900at 995.796 kb on - strand, within MIT1002_00900at 995.796 kb on - strand, within MIT1002_00900at 995.796 kb on - strand, within MIT1002_00900at 995.796 kb on - strand, within MIT1002_00900at 995.818 kb on + strand, within MIT1002_00900at 995.821 kb on + strand, within MIT1002_00900at 995.839 kb on - strand, within MIT1002_00900at 996.056 kb on - strand, within MIT1002_00900at 996.100 kb on + strand, within MIT1002_00900at 996.102 kb on - strand, within MIT1002_00900at 996.108 kb on + strand, within MIT1002_00900at 996.108 kb on + strand, within MIT1002_00900at 996.182 kb on + strand, within MIT1002_00900at 996.182 kb on + strand, within MIT1002_00900at 996.190 kb on - strand, within MIT1002_00900at 996.228 kb on - strand, within MIT1002_00900at 996.278 kb on + strand, within MIT1002_00900at 996.286 kb on - strand, within MIT1002_00900at 996.354 kb on + strand, within MIT1002_00900at 996.364 kb on + strand, within MIT1002_00900at 996.511 kb on + strand, within MIT1002_00900at 996.511 kb on + strand, within MIT1002_00900at 996.519 kb on - strand, within MIT1002_00900at 996.521 kb on + strand, within MIT1002_00900at 996.521 kb on + strand, within MIT1002_00900at 996.529 kb on - strand, within MIT1002_00900at 996.554 kb on - strandat 996.565 kb on + strandat 996.565 kb on + strandat 996.573 kb on - strandat 996.582 kb on + strandat 996.582 kb on + strandat 996.582 kb on + strandat 996.582 kb on + strandat 996.582 kb on + strandat 996.582 kb on + strandat 996.590 kb on - strandat 996.590 kb on - strandat 996.594 kb on + strandat 996.603 kb on + strandat 996.603 kb on + strandat 996.603 kb on + strandat 996.692 kb on + strandat 996.709 kb on - strandat 996.813 kb on + strand, within MIT1002_00901at 996.813 kb on + strand, within MIT1002_00901at 996.813 kb on - strand, within MIT1002_00901at 996.836 kb on - strand, within MIT1002_00901at 996.836 kb on - strand, within MIT1002_00901at 996.841 kb on - strand, within MIT1002_00901at 996.926 kb on - strand, within MIT1002_00901at 997.007 kb on - strand, within MIT1002_00901at 997.046 kb on + strand, within MIT1002_00901at 997.169 kb on + strand, within MIT1002_00901at 997.169 kb on + strand, within MIT1002_00901at 997.177 kb on - strand, within MIT1002_00901at 997.177 kb on - strand, within MIT1002_00901at 997.182 kb on + strand, within MIT1002_00901at 997.182 kb on + strand, within MIT1002_00901at 997.199 kb on + strand, within MIT1002_00901at 997.286 kb on - strand, within MIT1002_00901at 997.294 kb on - strand, within MIT1002_00901at 997.394 kb on + strand, within MIT1002_00901at 997.444 kb on - strand, within MIT1002_00901at 997.455 kb on - strand, within MIT1002_00901at 997.455 kb on - strand, within MIT1002_00901at 997.455 kb on - strand, within MIT1002_00901at 997.483 kb on + strand, within MIT1002_00901at 997.562 kb on - strand, within MIT1002_00901at 997.575 kb on - strandat 997.617 kb on + strandat 997.647 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment B, time point 2
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994,603 + MIT1002_00899 0.49 -0.2
994,644 + MIT1002_00899 0.51 +0.4
994,649 + MIT1002_00899 0.52 -1.8
994,652 - MIT1002_00899 0.52 -0.5
994,776 + MIT1002_00899 0.61 -1.7
994,782 + MIT1002_00899 0.61 -0.2
994,784 - MIT1002_00899 0.61 -0.2
994,857 - MIT1002_00899 0.66 +1.2
994,891 + MIT1002_00899 0.69 -1.2
994,942 + MIT1002_00899 0.72 -0.5
995,029 + MIT1002_00899 0.79 -0.1
995,037 - MIT1002_00899 0.79 +1.6
995,065 + MIT1002_00899 0.81 -0.5
995,073 - MIT1002_00899 0.82 +0.7
995,083 - MIT1002_00899 0.82 +1.2
995,086 + MIT1002_00899 0.83 +0.3
995,200 - -1.7
995,204 + +0.5
995,212 - -0.4
995,267 - +1.1
995,279 + -0.7
995,292 - -1.9
995,335 + -1.1
995,377 + -0.7
995,395 + -0.5
995,407 + +0.6
995,408 - -0.2
995,409 - +2.2
995,415 - +0.3
995,415 - -0.2
995,415 - +0.8
995,415 - +2.1
995,464 + -1.4
995,505 - +0.3
995,722 - MIT1002_00900 0.22 +0.9
995,780 - MIT1002_00900 0.27 +0.7
995,780 - MIT1002_00900 0.27 +0.1
995,780 - MIT1002_00900 0.27 +0.9
995,788 + MIT1002_00900 0.28 -0.2
995,796 - MIT1002_00900 0.29 -0.1
995,796 - MIT1002_00900 0.29 +0.3
995,796 - MIT1002_00900 0.29 -1.2
995,796 - MIT1002_00900 0.29 -0.7
995,796 - MIT1002_00900 0.29 +0.6
995,796 - MIT1002_00900 0.29 +0.5
995,818 + MIT1002_00900 0.30 +0.6
995,821 + MIT1002_00900 0.31 +0.5
995,839 - MIT1002_00900 0.32 +0.7
996,056 - MIT1002_00900 0.50 +0.3
996,100 + MIT1002_00900 0.53 -0.3
996,102 - MIT1002_00900 0.54 -2.0
996,108 + MIT1002_00900 0.54 -1.1
996,108 + MIT1002_00900 0.54 +0.4
996,182 + MIT1002_00900 0.60 +0.5
996,182 + MIT1002_00900 0.60 +1.4
996,190 - MIT1002_00900 0.61 +0.2
996,228 - MIT1002_00900 0.64 -2.3
996,278 + MIT1002_00900 0.68 +1.1
996,286 - MIT1002_00900 0.69 -0.7
996,354 + MIT1002_00900 0.74 -0.6
996,364 + MIT1002_00900 0.75 -0.3
996,511 + MIT1002_00900 0.87 -0.1
996,511 + MIT1002_00900 0.87 +0.0
996,519 - MIT1002_00900 0.88 +1.2
996,521 + MIT1002_00900 0.88 -0.0
996,521 + MIT1002_00900 0.88 +0.7
996,529 - MIT1002_00900 0.89 +2.4
996,554 - -0.5
996,565 + -2.0
996,565 + -1.3
996,573 - +0.1
996,582 + -0.8
996,582 + +0.5
996,582 + +1.2
996,582 + -1.0
996,582 + +0.8
996,582 + +1.8
996,590 - +0.7
996,590 - +0.2
996,594 + -1.1
996,603 + -0.0
996,603 + +0.1
996,603 + +1.1
996,692 + +0.5
996,709 - -0.5
996,813 + MIT1002_00901 0.11 +0.5
996,813 + MIT1002_00901 0.11 -0.4
996,813 - MIT1002_00901 0.11 -0.1
996,836 - MIT1002_00901 0.14 -0.1
996,836 - MIT1002_00901 0.14 +0.2
996,841 - MIT1002_00901 0.14 +0.3
996,926 - MIT1002_00901 0.23 +1.8
997,007 - MIT1002_00901 0.31 +0.2
997,046 + MIT1002_00901 0.35 +0.1
997,169 + MIT1002_00901 0.48 -0.4
997,169 + MIT1002_00901 0.48 +0.3
997,177 - MIT1002_00901 0.49 +1.1
997,177 - MIT1002_00901 0.49 +0.3
997,182 + MIT1002_00901 0.49 +0.5
997,182 + MIT1002_00901 0.49 +0.1
997,199 + MIT1002_00901 0.51 +0.1
997,286 - MIT1002_00901 0.60 +1.1
997,294 - MIT1002_00901 0.61 -0.4
997,394 + MIT1002_00901 0.71 -0.2
997,444 - MIT1002_00901 0.76 +0.5
997,455 - MIT1002_00901 0.78 -1.8
997,455 - MIT1002_00901 0.78 -0.5
997,455 - MIT1002_00901 0.78 -0.8
997,483 + MIT1002_00901 0.80 -0.6
997,562 - MIT1002_00901 0.89 +0.2
997,575 - -1.2
997,617 + +0.0
997,647 + +0.4

Or see this region's nucleotide sequence