Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment B, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00719 and MIT1002_00720 are separated by 479 nucleotides MIT1002_00720 and MIT1002_00721 are separated by 122 nucleotides MIT1002_00721 and MIT1002_00722 are separated by 92 nucleotides
MIT1002_00719: MIT1002_00719 - cytochrome c oxidase accessory protein CcoG, at 786,350 to 787,780
_00719
MIT1002_00720: MIT1002_00720 - hypothetical protein, at 788,260 to 788,631
_00720
MIT1002_00721: MIT1002_00721 - hypothetical protein, at 788,754 to 789,299
_00721
MIT1002_00722: MIT1002_00722 - Acyl-CoA dehydrogenase, at 789,392 to 791,152
_00722
Position (kb) 788
789 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 787.269 kb on + strand, within MIT1002_00719 at 787.438 kb on - strand, within MIT1002_00719 at 787.594 kb on - strand, within MIT1002_00719 at 787.652 kb on + strand at 787.662 kb on - strand at 787.665 kb on + strand at 787.712 kb on - strand at 787.721 kb on + strand at 787.729 kb on - strand at 787.729 kb on - strand at 787.729 kb on - strand at 787.749 kb on + strand at 787.755 kb on - strand at 787.790 kb on - strand at 787.818 kb on + strand at 787.818 kb on + strand at 787.818 kb on + strand at 787.818 kb on + strand at 787.818 kb on + strand at 787.824 kb on - strand at 787.842 kb on + strand at 787.944 kb on + strand at 787.946 kb on + strand at 788.049 kb on - strand at 788.182 kb on + strand at 788.316 kb on + strand, within MIT1002_00720 at 788.324 kb on - strand, within MIT1002_00720 at 788.331 kb on + strand, within MIT1002_00720 at 788.345 kb on - strand, within MIT1002_00720 at 788.412 kb on - strand, within MIT1002_00720 at 788.447 kb on + strand, within MIT1002_00720 at 788.452 kb on - strand, within MIT1002_00720 at 788.455 kb on - strand, within MIT1002_00720 at 788.528 kb on - strand, within MIT1002_00720 at 788.530 kb on - strand, within MIT1002_00720 at 788.588 kb on + strand, within MIT1002_00720 at 788.598 kb on + strand at 788.635 kb on + strand at 788.643 kb on - strand at 788.655 kb on + strand at 788.718 kb on + strand at 788.807 kb on - strand at 788.825 kb on + strand, within MIT1002_00721 at 788.878 kb on - strand, within MIT1002_00721 at 788.887 kb on + strand, within MIT1002_00721 at 788.900 kb on - strand, within MIT1002_00721 at 788.932 kb on + strand, within MIT1002_00721 at 788.971 kb on - strand, within MIT1002_00721 at 789.023 kb on + strand, within MIT1002_00721 at 789.028 kb on + strand, within MIT1002_00721 at 789.031 kb on - strand, within MIT1002_00721 at 789.031 kb on - strand, within MIT1002_00721 at 789.031 kb on - strand, within MIT1002_00721 at 789.054 kb on - strand, within MIT1002_00721 at 789.214 kb on + strand, within MIT1002_00721 at 789.367 kb on + strand at 789.367 kb on + strand at 789.367 kb on + strand at 789.367 kb on + strand at 789.367 kb on + strand at 789.372 kb on + strand at 789.375 kb on - strand at 789.375 kb on - strand at 789.375 kb on - strand at 789.375 kb on - strand at 789.375 kb on - strand at 789.474 kb on - strand at 789.507 kb on + strand at 789.567 kb on + strand at 789.569 kb on + strand, within MIT1002_00722 at 789.575 kb on - strand, within MIT1002_00722 at 789.577 kb on - strand, within MIT1002_00722 at 789.582 kb on - strand, within MIT1002_00722 at 789.582 kb on - strand, within MIT1002_00722 at 789.585 kb on - strand, within MIT1002_00722 at 789.599 kb on + strand, within MIT1002_00722 at 789.622 kb on + strand, within MIT1002_00722
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment B, time point 2 remove 787,269 + MIT1002_00719 0.64 -0.5 787,438 - MIT1002_00719 0.76 -1.6 787,594 - MIT1002_00719 0.87 -0.3 787,652 + -0.8 787,662 - -0.7 787,665 + -0.6 787,712 - +0.4 787,721 + -0.8 787,729 - -0.0 787,729 - -2.7 787,729 - -0.2 787,749 + -0.4 787,755 - -1.8 787,790 - -0.5 787,818 + +0.0 787,818 + -0.1 787,818 + +0.3 787,818 + +1.3 787,818 + +0.1 787,824 - -0.8 787,842 + -0.1 787,944 + +0.2 787,946 + -0.8 788,049 - -0.2 788,182 + -0.3 788,316 + MIT1002_00720 0.15 +0.2 788,324 - MIT1002_00720 0.17 -3.4 788,331 + MIT1002_00720 0.19 +0.1 788,345 - MIT1002_00720 0.23 -1.0 788,412 - MIT1002_00720 0.41 -0.3 788,447 + MIT1002_00720 0.50 +0.2 788,452 - MIT1002_00720 0.52 +0.3 788,455 - MIT1002_00720 0.52 +3.1 788,528 - MIT1002_00720 0.72 +0.7 788,530 - MIT1002_00720 0.73 -1.9 788,588 + MIT1002_00720 0.88 +0.4 788,598 + -0.8 788,635 + +1.1 788,643 - +0.7 788,655 + +0.7 788,718 + -0.1 788,807 - -0.1 788,825 + MIT1002_00721 0.13 -0.1 788,878 - MIT1002_00721 0.23 -1.1 788,887 + MIT1002_00721 0.24 -0.7 788,900 - MIT1002_00721 0.27 -1.3 788,932 + MIT1002_00721 0.33 +0.1 788,971 - MIT1002_00721 0.40 +0.3 789,023 + MIT1002_00721 0.49 +0.2 789,028 + MIT1002_00721 0.50 -0.3 789,031 - MIT1002_00721 0.51 -0.8 789,031 - MIT1002_00721 0.51 -0.5 789,031 - MIT1002_00721 0.51 -2.3 789,054 - MIT1002_00721 0.55 -1.0 789,214 + MIT1002_00721 0.84 +0.2 789,367 + +0.1 789,367 + -0.1 789,367 + -0.1 789,367 + +0.3 789,367 + +2.5 789,372 + +0.5 789,375 - +0.6 789,375 - -0.3 789,375 - -0.9 789,375 - +2.6 789,375 - -1.6 789,474 - -0.4 789,507 + -1.8 789,567 + +0.4 789,569 + MIT1002_00722 0.10 -0.6 789,575 - MIT1002_00722 0.10 -0.5 789,577 - MIT1002_00722 0.11 +0.1 789,582 - MIT1002_00722 0.11 -0.8 789,582 - MIT1002_00722 0.11 +0.2 789,585 - MIT1002_00722 0.11 -0.6 789,599 + MIT1002_00722 0.12 +0.5 789,622 + MIT1002_00722 0.13 -1.5
Or see this region's nucleotide sequence