Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00701

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment B, time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00700 and MIT1002_00701 are separated by 12 nucleotidesMIT1002_00701 and MIT1002_00702 overlap by 17 nucleotides MIT1002_00700: MIT1002_00700 - Nitrate reductase, at 765,944 to 768,853 _00700 MIT1002_00701: MIT1002_00701 - Siroheme synthase, at 768,866 to 769,849 _00701 MIT1002_00702: MIT1002_00702 - Anthranilate phosphoribosyltransferase, at 769,833 to 770,819 _00702 Position (kb) 768 769 770Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 767.876 kb on + strand, within MIT1002_00700at 767.893 kb on + strand, within MIT1002_00700at 767.895 kb on - strand, within MIT1002_00700at 767.938 kb on - strand, within MIT1002_00700at 768.020 kb on - strand, within MIT1002_00700at 768.068 kb on - strand, within MIT1002_00700at 768.074 kb on + strand, within MIT1002_00700at 768.074 kb on + strand, within MIT1002_00700at 768.074 kb on + strand, within MIT1002_00700at 768.082 kb on - strand, within MIT1002_00700at 768.082 kb on - strand, within MIT1002_00700at 768.117 kb on - strand, within MIT1002_00700at 768.128 kb on + strand, within MIT1002_00700at 768.158 kb on + strand, within MIT1002_00700at 768.326 kb on + strand, within MIT1002_00700at 768.343 kb on + strand, within MIT1002_00700at 768.373 kb on + strand, within MIT1002_00700at 768.438 kb on + strand, within MIT1002_00700at 768.438 kb on + strand, within MIT1002_00700at 768.446 kb on - strand, within MIT1002_00700at 768.564 kb on + strandat 768.564 kb on + strandat 768.564 kb on + strandat 768.564 kb on + strandat 768.572 kb on - strandat 768.572 kb on - strandat 768.603 kb on + strandat 768.638 kb on - strandat 768.687 kb on + strandat 768.687 kb on + strandat 768.687 kb on + strandat 768.687 kb on + strandat 768.687 kb on + strandat 768.687 kb on + strandat 768.687 kb on + strandat 768.687 kb on + strandat 768.687 kb on + strandat 768.687 kb on + strandat 768.695 kb on - strandat 768.695 kb on - strandat 768.695 kb on - strandat 768.695 kb on - strandat 768.695 kb on - strandat 768.695 kb on - strandat 768.708 kb on + strandat 768.769 kb on - strandat 768.864 kb on - strandat 768.975 kb on - strand, within MIT1002_00701at 768.989 kb on - strand, within MIT1002_00701at 768.989 kb on - strand, within MIT1002_00701at 769.087 kb on + strand, within MIT1002_00701at 769.093 kb on - strand, within MIT1002_00701at 769.154 kb on - strand, within MIT1002_00701at 769.186 kb on + strand, within MIT1002_00701at 769.223 kb on - strand, within MIT1002_00701at 769.263 kb on + strand, within MIT1002_00701at 769.264 kb on - strand, within MIT1002_00701at 769.271 kb on - strand, within MIT1002_00701at 769.423 kb on - strand, within MIT1002_00701at 769.479 kb on + strand, within MIT1002_00701at 769.497 kb on + strand, within MIT1002_00701at 769.590 kb on - strand, within MIT1002_00701at 769.615 kb on + strand, within MIT1002_00701at 769.640 kb on + strand, within MIT1002_00701at 769.640 kb on + strand, within MIT1002_00701at 769.640 kb on + strand, within MIT1002_00701at 769.648 kb on - strand, within MIT1002_00701at 769.691 kb on - strand, within MIT1002_00701at 769.732 kb on + strand, within MIT1002_00701at 769.801 kb on + strandat 769.801 kb on + strandat 769.807 kb on - strandat 769.809 kb on - strandat 769.888 kb on + strandat 769.888 kb on + strandat 769.894 kb on + strandat 769.945 kb on - strand, within MIT1002_00702at 769.971 kb on + strand, within MIT1002_00702at 770.002 kb on + strand, within MIT1002_00702at 770.040 kb on - strand, within MIT1002_00702at 770.057 kb on + strand, within MIT1002_00702at 770.077 kb on + strand, within MIT1002_00702at 770.212 kb on - strand, within MIT1002_00702at 770.220 kb on + strand, within MIT1002_00702at 770.220 kb on + strand, within MIT1002_00702at 770.220 kb on + strand, within MIT1002_00702at 770.222 kb on - strand, within MIT1002_00702at 770.223 kb on - strand, within MIT1002_00702at 770.238 kb on - strand, within MIT1002_00702at 770.247 kb on - strand, within MIT1002_00702at 770.254 kb on + strand, within MIT1002_00702at 770.262 kb on - strand, within MIT1002_00702at 770.262 kb on - strand, within MIT1002_00702at 770.292 kb on - strand, within MIT1002_00702at 770.366 kb on + strand, within MIT1002_00702at 770.376 kb on + strand, within MIT1002_00702at 770.384 kb on - strand, within MIT1002_00702at 770.389 kb on - strand, within MIT1002_00702at 770.396 kb on - strand, within MIT1002_00702at 770.531 kb on + strand, within MIT1002_00702at 770.598 kb on - strand, within MIT1002_00702at 770.655 kb on + strand, within MIT1002_00702at 770.694 kb on + strand, within MIT1002_00702at 770.694 kb on + strand, within MIT1002_00702at 770.703 kb on + strand, within MIT1002_00702at 770.725 kb on + strandat 770.780 kb on + strandat 770.788 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment B, time point 2
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767,876 + MIT1002_00700 0.66 +0.0
767,893 + MIT1002_00700 0.67 -0.3
767,895 - MIT1002_00700 0.67 +1.3
767,938 - MIT1002_00700 0.69 +1.1
768,020 - MIT1002_00700 0.71 -0.9
768,068 - MIT1002_00700 0.73 -1.7
768,074 + MIT1002_00700 0.73 -0.3
768,074 + MIT1002_00700 0.73 -0.1
768,074 + MIT1002_00700 0.73 +0.7
768,082 - MIT1002_00700 0.73 -0.2
768,082 - MIT1002_00700 0.73 -0.2
768,117 - MIT1002_00700 0.75 -1.4
768,128 + MIT1002_00700 0.75 +2.0
768,158 + MIT1002_00700 0.76 -0.7
768,326 + MIT1002_00700 0.82 -0.2
768,343 + MIT1002_00700 0.82 -0.4
768,373 + MIT1002_00700 0.83 -0.4
768,438 + MIT1002_00700 0.86 -0.4
768,438 + MIT1002_00700 0.86 -0.1
768,446 - MIT1002_00700 0.86 -0.3
768,564 + -0.1
768,564 + +0.1
768,564 + +1.8
768,564 + -0.6
768,572 - -1.0
768,572 - +0.2
768,603 + +0.7
768,638 - -0.7
768,687 + +0.2
768,687 + +0.8
768,687 + -1.0
768,687 + -2.0
768,687 + -0.2
768,687 + +0.8
768,687 + +0.2
768,687 + +0.5
768,687 + -1.1
768,687 + -1.7
768,695 - -1.3
768,695 - +0.9
768,695 - +1.1
768,695 - +0.6
768,695 - +0.1
768,695 - -0.1
768,708 + +0.5
768,769 - +0.1
768,864 - +0.1
768,975 - MIT1002_00701 0.11 -0.6
768,989 - MIT1002_00701 0.12 +0.1
768,989 - MIT1002_00701 0.12 -1.6
769,087 + MIT1002_00701 0.22 +0.1
769,093 - MIT1002_00701 0.23 +0.1
769,154 - MIT1002_00701 0.29 -1.8
769,186 + MIT1002_00701 0.33 -0.4
769,223 - MIT1002_00701 0.36 -0.9
769,263 + MIT1002_00701 0.40 +0.6
769,264 - MIT1002_00701 0.40 +0.3
769,271 - MIT1002_00701 0.41 -1.0
769,423 - MIT1002_00701 0.57 -0.5
769,479 + MIT1002_00701 0.62 +1.3
769,497 + MIT1002_00701 0.64 -0.4
769,590 - MIT1002_00701 0.74 -2.5
769,615 + MIT1002_00701 0.76 -1.8
769,640 + MIT1002_00701 0.79 -0.2
769,640 + MIT1002_00701 0.79 -0.4
769,640 + MIT1002_00701 0.79 -0.1
769,648 - MIT1002_00701 0.79 +1.3
769,691 - MIT1002_00701 0.84 -0.6
769,732 + MIT1002_00701 0.88 -0.6
769,801 + -0.0
769,801 + -0.0
769,807 - +1.3
769,809 - +1.2
769,888 + +0.0
769,888 + -1.5
769,894 + +0.5
769,945 - MIT1002_00702 0.11 +0.4
769,971 + MIT1002_00702 0.14 +0.6
770,002 + MIT1002_00702 0.17 -1.9
770,040 - MIT1002_00702 0.21 +0.1
770,057 + MIT1002_00702 0.23 -0.0
770,077 + MIT1002_00702 0.25 +0.2
770,212 - MIT1002_00702 0.38 -0.3
770,220 + MIT1002_00702 0.39 +0.0
770,220 + MIT1002_00702 0.39 +0.6
770,220 + MIT1002_00702 0.39 +0.8
770,222 - MIT1002_00702 0.39 +0.0
770,223 - MIT1002_00702 0.40 +0.8
770,238 - MIT1002_00702 0.41 -0.1
770,247 - MIT1002_00702 0.42 +0.2
770,254 + MIT1002_00702 0.43 -0.1
770,262 - MIT1002_00702 0.43 +0.8
770,262 - MIT1002_00702 0.43 -0.1
770,292 - MIT1002_00702 0.47 -0.3
770,366 + MIT1002_00702 0.54 -0.8
770,376 + MIT1002_00702 0.55 -0.1
770,384 - MIT1002_00702 0.56 +0.8
770,389 - MIT1002_00702 0.56 +0.3
770,396 - MIT1002_00702 0.57 +1.1
770,531 + MIT1002_00702 0.71 -0.3
770,598 - MIT1002_00702 0.78 +0.1
770,655 + MIT1002_00702 0.83 +0.8
770,694 + MIT1002_00702 0.87 -3.3
770,694 + MIT1002_00702 0.87 +0.4
770,703 + MIT1002_00702 0.88 -0.1
770,725 + -2.2
770,780 + +0.3
770,788 - -1.8

Or see this region's nucleotide sequence