Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00472

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment B, time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00471 and MIT1002_00472 are separated by 613 nucleotidesMIT1002_00472 and MIT1002_00473 are separated by 53 nucleotides MIT1002_00471: MIT1002_00471 - N-acetyl-gamma-glutamyl-phosphate reductase, at 514,934 to 515,947 _00471 MIT1002_00472: MIT1002_00472 - Methylglyoxal synthase, at 516,561 to 516,971 _00472 MIT1002_00473: MIT1002_00473 - hypothetical protein, at 517,025 to 517,981 _00473 Position (kb) 516 517Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1 2at 515.572 kb on - strand, within MIT1002_00471at 515.597 kb on - strand, within MIT1002_00471at 515.597 kb on - strand, within MIT1002_00471at 515.597 kb on - strand, within MIT1002_00471at 515.617 kb on + strand, within MIT1002_00471at 515.617 kb on + strand, within MIT1002_00471at 515.625 kb on - strand, within MIT1002_00471at 515.625 kb on - strand, within MIT1002_00471at 515.625 kb on - strand, within MIT1002_00471at 515.639 kb on - strand, within MIT1002_00471at 515.692 kb on - strand, within MIT1002_00471at 515.773 kb on + strand, within MIT1002_00471at 515.816 kb on + strand, within MIT1002_00471at 515.816 kb on + strand, within MIT1002_00471at 515.816 kb on + strand, within MIT1002_00471at 515.816 kb on + strand, within MIT1002_00471at 515.824 kb on - strand, within MIT1002_00471at 515.824 kb on - strand, within MIT1002_00471at 515.824 kb on - strand, within MIT1002_00471at 515.840 kb on - strand, within MIT1002_00471at 515.898 kb on + strandat 515.909 kb on + strandat 516.087 kb on + strandat 516.092 kb on + strandat 516.095 kb on - strandat 516.112 kb on + strandat 516.117 kb on + strandat 516.124 kb on + strandat 516.356 kb on + strandat 516.436 kb on - strandat 516.436 kb on - strandat 516.473 kb on + strandat 516.475 kb on + strandat 516.481 kb on - strandat 516.481 kb on - strandat 516.481 kb on - strandat 516.483 kb on - strandat 516.501 kb on - strandat 516.519 kb on - strandat 516.541 kb on + strandat 516.593 kb on - strandat 516.622 kb on + strand, within MIT1002_00472at 516.622 kb on + strand, within MIT1002_00472at 516.622 kb on + strand, within MIT1002_00472at 516.632 kb on + strand, within MIT1002_00472at 516.632 kb on + strand, within MIT1002_00472at 516.634 kb on + strand, within MIT1002_00472at 516.634 kb on + strand, within MIT1002_00472at 516.653 kb on + strand, within MIT1002_00472at 516.661 kb on - strand, within MIT1002_00472at 516.661 kb on - strand, within MIT1002_00472at 516.661 kb on - strand, within MIT1002_00472at 516.671 kb on + strand, within MIT1002_00472at 516.685 kb on + strand, within MIT1002_00472at 516.706 kb on + strand, within MIT1002_00472at 516.745 kb on - strand, within MIT1002_00472at 516.760 kb on - strand, within MIT1002_00472at 516.812 kb on + strand, within MIT1002_00472at 516.817 kb on + strand, within MIT1002_00472at 516.832 kb on + strand, within MIT1002_00472at 516.832 kb on + strand, within MIT1002_00472at 516.839 kb on + strand, within MIT1002_00472at 516.840 kb on - strand, within MIT1002_00472at 516.857 kb on + strand, within MIT1002_00472at 516.868 kb on - strand, within MIT1002_00472at 516.871 kb on + strand, within MIT1002_00472at 516.872 kb on + strand, within MIT1002_00472at 516.872 kb on + strand, within MIT1002_00472at 516.896 kb on + strand, within MIT1002_00472at 516.896 kb on + strand, within MIT1002_00472at 516.896 kb on + strand, within MIT1002_00472at 517.018 kb on - strandat 517.057 kb on - strandat 517.105 kb on + strandat 517.146 kb on + strand, within MIT1002_00473at 517.146 kb on + strand, within MIT1002_00473at 517.153 kb on + strand, within MIT1002_00473at 517.153 kb on + strand, within MIT1002_00473at 517.154 kb on - strand, within MIT1002_00473at 517.154 kb on - strand, within MIT1002_00473at 517.187 kb on + strand, within MIT1002_00473at 517.203 kb on + strand, within MIT1002_00473at 517.208 kb on + strand, within MIT1002_00473at 517.211 kb on - strand, within MIT1002_00473at 517.211 kb on - strand, within MIT1002_00473at 517.211 kb on - strand, within MIT1002_00473at 517.234 kb on - strand, within MIT1002_00473at 517.241 kb on + strand, within MIT1002_00473at 517.249 kb on - strand, within MIT1002_00473at 517.249 kb on - strand, within MIT1002_00473at 517.411 kb on + strand, within MIT1002_00473at 517.429 kb on + strand, within MIT1002_00473at 517.477 kb on + strand, within MIT1002_00473at 517.477 kb on + strand, within MIT1002_00473at 517.605 kb on + strand, within MIT1002_00473at 517.605 kb on + strand, within MIT1002_00473at 517.605 kb on + strand, within MIT1002_00473at 517.613 kb on - strand, within MIT1002_00473at 517.627 kb on - strand, within MIT1002_00473at 517.694 kb on + strand, within MIT1002_00473at 517.718 kb on + strand, within MIT1002_00473at 517.806 kb on + strand, within MIT1002_00473

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment B, time point 2
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515,572 - MIT1002_00471 0.63 -0.8
515,597 - MIT1002_00471 0.65 -3.6
515,597 - MIT1002_00471 0.65 -5.7
515,597 - MIT1002_00471 0.65 -5.0
515,617 + MIT1002_00471 0.67 -4.8
515,617 + MIT1002_00471 0.67 -3.9
515,625 - MIT1002_00471 0.68 -5.4
515,625 - MIT1002_00471 0.68 -3.2
515,625 - MIT1002_00471 0.68 -6.8
515,639 - MIT1002_00471 0.70 -3.5
515,692 - MIT1002_00471 0.75 -5.7
515,773 + MIT1002_00471 0.83 -2.9
515,816 + MIT1002_00471 0.87 -6.7
515,816 + MIT1002_00471 0.87 -1.1
515,816 + MIT1002_00471 0.87 -5.0
515,816 + MIT1002_00471 0.87 -3.5
515,824 - MIT1002_00471 0.88 -5.1
515,824 - MIT1002_00471 0.88 -1.4
515,824 - MIT1002_00471 0.88 -5.1
515,840 - MIT1002_00471 0.89 -4.9
515,898 + -4.0
515,909 + -4.0
516,087 + -4.4
516,092 + -2.0
516,095 - -1.0
516,112 + -3.5
516,117 + -3.1
516,124 + -3.8
516,356 + +0.5
516,436 - +0.4
516,436 - +0.1
516,473 + -0.2
516,475 + +0.1
516,481 - +0.2
516,481 - -0.2
516,481 - -0.6
516,483 - +0.9
516,501 - -0.2
516,519 - -0.2
516,541 + +0.5
516,593 - -0.8
516,622 + MIT1002_00472 0.15 -0.2
516,622 + MIT1002_00472 0.15 +0.3
516,622 + MIT1002_00472 0.15 -0.4
516,632 + MIT1002_00472 0.17 -1.0
516,632 + MIT1002_00472 0.17 -0.6
516,634 + MIT1002_00472 0.18 +0.5
516,634 + MIT1002_00472 0.18 -1.0
516,653 + MIT1002_00472 0.22 +1.9
516,661 - MIT1002_00472 0.24 +0.2
516,661 - MIT1002_00472 0.24 +1.7
516,661 - MIT1002_00472 0.24 +0.5
516,671 + MIT1002_00472 0.27 -1.0
516,685 + MIT1002_00472 0.30 -1.1
516,706 + MIT1002_00472 0.35 +0.0
516,745 - MIT1002_00472 0.45 +0.7
516,760 - MIT1002_00472 0.48 -2.2
516,812 + MIT1002_00472 0.61 -0.7
516,817 + MIT1002_00472 0.62 -0.1
516,832 + MIT1002_00472 0.66 -1.4
516,832 + MIT1002_00472 0.66 -0.5
516,839 + MIT1002_00472 0.68 -0.1
516,840 - MIT1002_00472 0.68 -0.6
516,857 + MIT1002_00472 0.72 -0.8
516,868 - MIT1002_00472 0.75 -1.3
516,871 + MIT1002_00472 0.75 +0.7
516,872 + MIT1002_00472 0.76 -0.4
516,872 + MIT1002_00472 0.76 -0.2
516,896 + MIT1002_00472 0.82 -0.5
516,896 + MIT1002_00472 0.82 -0.0
516,896 + MIT1002_00472 0.82 +0.5
517,018 - -0.1
517,057 - +1.0
517,105 + -0.5
517,146 + MIT1002_00473 0.13 -1.6
517,146 + MIT1002_00473 0.13 +0.3
517,153 + MIT1002_00473 0.13 +0.4
517,153 + MIT1002_00473 0.13 +0.1
517,154 - MIT1002_00473 0.13 +0.5
517,154 - MIT1002_00473 0.13 -0.2
517,187 + MIT1002_00473 0.17 +0.3
517,203 + MIT1002_00473 0.19 -1.6
517,208 + MIT1002_00473 0.19 +0.9
517,211 - MIT1002_00473 0.19 -0.4
517,211 - MIT1002_00473 0.19 -1.7
517,211 - MIT1002_00473 0.19 +0.4
517,234 - MIT1002_00473 0.22 -0.5
517,241 + MIT1002_00473 0.23 -1.9
517,249 - MIT1002_00473 0.23 -0.1
517,249 - MIT1002_00473 0.23 -0.5
517,411 + MIT1002_00473 0.40 +0.4
517,429 + MIT1002_00473 0.42 -0.6
517,477 + MIT1002_00473 0.47 -0.1
517,477 + MIT1002_00473 0.47 -0.7
517,605 + MIT1002_00473 0.61 -0.6
517,605 + MIT1002_00473 0.61 -3.1
517,605 + MIT1002_00473 0.61 +0.3
517,613 - MIT1002_00473 0.61 -2.3
517,627 - MIT1002_00473 0.63 -0.3
517,694 + MIT1002_00473 0.70 +0.7
517,718 + MIT1002_00473 0.72 -0.2
517,806 + MIT1002_00473 0.82 -0.6

Or see this region's nucleotide sequence