Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment B, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00460 and MIT1002_00461 are separated by 437 nucleotides MIT1002_00461 and MIT1002_00462 are separated by 263 nucleotides MIT1002_00462 and MIT1002_00463 are separated by 108 nucleotides MIT1002_00463 and MIT1002_00464 are separated by 15 nucleotides MIT1002_00464 and MIT1002_00465 are separated by 6 nucleotides
MIT1002_00460: MIT1002_00460 - hypothetical protein, at 504,721 to 505,188
_00460
MIT1002_00461: MIT1002_00461 - Catalase, at 505,626 to 507,101
_00461
MIT1002_00462: MIT1002_00462 - Small integral membrane protein, at 507,365 to 507,532
_00462
MIT1002_00463: MIT1002_00463 - hypothetical protein, at 507,641 to 507,898
_00463
MIT1002_00464: MIT1002_00464 - hypothetical protein, at 507,914 to 508,081
_00464
MIT1002_00465: MIT1002_00465 - monoglyceride lipase, at 508,088 to 508,984
_00465
Position (kb) 505
506
507
508 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 504.662 kb on + strand at 504.662 kb on + strand at 504.667 kb on - strand at 504.670 kb on - strand at 504.670 kb on - strand at 504.670 kb on - strand at 504.821 kb on - strand, within MIT1002_00460 at 504.887 kb on - strand, within MIT1002_00460 at 504.955 kb on - strand, within MIT1002_00460 at 504.995 kb on + strand, within MIT1002_00460 at 505.157 kb on - strand at 505.197 kb on - strand at 505.198 kb on + strand at 505.307 kb on - strand at 505.307 kb on - strand at 505.317 kb on - strand at 505.343 kb on + strand at 505.351 kb on - strand at 505.351 kb on - strand at 505.431 kb on - strand at 505.431 kb on - strand at 505.628 kb on + strand at 505.636 kb on - strand at 505.687 kb on + strand at 505.712 kb on + strand at 505.720 kb on - strand at 505.720 kb on - strand at 505.728 kb on - strand at 505.733 kb on - strand at 505.779 kb on + strand, within MIT1002_00461 at 505.779 kb on - strand, within MIT1002_00461 at 505.781 kb on + strand, within MIT1002_00461 at 505.789 kb on - strand, within MIT1002_00461 at 505.789 kb on - strand, within MIT1002_00461 at 505.789 kb on - strand, within MIT1002_00461 at 505.789 kb on - strand, within MIT1002_00461 at 505.817 kb on + strand, within MIT1002_00461 at 505.828 kb on + strand, within MIT1002_00461 at 505.828 kb on + strand, within MIT1002_00461 at 505.828 kb on + strand, within MIT1002_00461 at 505.836 kb on - strand, within MIT1002_00461 at 505.836 kb on - strand, within MIT1002_00461 at 505.836 kb on - strand, within MIT1002_00461 at 505.857 kb on - strand, within MIT1002_00461 at 505.861 kb on - strand, within MIT1002_00461 at 505.861 kb on - strand, within MIT1002_00461 at 505.938 kb on - strand, within MIT1002_00461 at 506.194 kb on - strand, within MIT1002_00461 at 506.279 kb on - strand, within MIT1002_00461 at 506.315 kb on - strand, within MIT1002_00461 at 506.375 kb on - strand, within MIT1002_00461 at 506.437 kb on - strand, within MIT1002_00461 at 506.469 kb on - strand, within MIT1002_00461 at 506.494 kb on - strand, within MIT1002_00461 at 506.528 kb on - strand, within MIT1002_00461 at 506.540 kb on + strand, within MIT1002_00461 at 506.642 kb on - strand, within MIT1002_00461 at 506.717 kb on + strand, within MIT1002_00461 at 506.727 kb on + strand, within MIT1002_00461 at 506.753 kb on - strand, within MIT1002_00461 at 506.760 kb on - strand, within MIT1002_00461 at 506.796 kb on - strand, within MIT1002_00461 at 506.995 kb on + strand at 506.995 kb on + strand at 507.003 kb on - strand at 507.003 kb on - strand at 507.003 kb on - strand at 507.003 kb on - strand at 507.003 kb on - strand at 507.009 kb on + strand at 507.047 kb on - strand at 507.050 kb on + strand at 507.054 kb on + strand at 507.074 kb on + strand at 507.074 kb on + strand at 507.082 kb on - strand at 507.209 kb on + strand at 507.271 kb on - strand at 507.312 kb on - strand at 507.365 kb on + strand at 507.551 kb on - strand at 507.577 kb on + strand at 507.585 kb on - strand at 507.595 kb on - strand at 507.618 kb on + strand at 507.645 kb on + strand at 507.657 kb on + strand at 507.665 kb on - strand at 507.665 kb on - strand at 507.677 kb on + strand, within MIT1002_00463 at 507.840 kb on + strand, within MIT1002_00463 at 507.848 kb on - strand, within MIT1002_00463 at 507.854 kb on - strand, within MIT1002_00463 at 507.919 kb on - strand at 508.083 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment B, time point 2 remove 504,662 + +0.2 504,662 + -0.3 504,667 - -1.2 504,670 - +0.7 504,670 - -0.4 504,670 - -2.0 504,821 - MIT1002_00460 0.21 +0.8 504,887 - MIT1002_00460 0.35 +0.1 504,955 - MIT1002_00460 0.50 +0.3 504,995 + MIT1002_00460 0.59 +0.3 505,157 - -1.6 505,197 - -0.4 505,198 + +0.3 505,307 - -0.0 505,307 - -0.9 505,317 - -0.4 505,343 + -1.3 505,351 - -0.4 505,351 - +0.5 505,431 - +0.5 505,431 - +1.5 505,628 + +0.9 505,636 - -0.3 505,687 + -0.5 505,712 + -0.7 505,720 - +1.1 505,720 - +2.1 505,728 - +0.4 505,733 - -0.6 505,779 + MIT1002_00461 0.10 -3.1 505,779 - MIT1002_00461 0.10 +0.2 505,781 + MIT1002_00461 0.11 +0.4 505,789 - MIT1002_00461 0.11 +0.4 505,789 - MIT1002_00461 0.11 +2.7 505,789 - MIT1002_00461 0.11 -0.4 505,789 - MIT1002_00461 0.11 +1.0 505,817 + MIT1002_00461 0.13 -0.4 505,828 + MIT1002_00461 0.14 -0.8 505,828 + MIT1002_00461 0.14 +0.4 505,828 + MIT1002_00461 0.14 +0.4 505,836 - MIT1002_00461 0.14 +0.1 505,836 - MIT1002_00461 0.14 -0.9 505,836 - MIT1002_00461 0.14 -0.0 505,857 - MIT1002_00461 0.16 +0.6 505,861 - MIT1002_00461 0.16 -1.1 505,861 - MIT1002_00461 0.16 +0.4 505,938 - MIT1002_00461 0.21 +0.3 506,194 - MIT1002_00461 0.38 -0.3 506,279 - MIT1002_00461 0.44 -0.7 506,315 - MIT1002_00461 0.47 +0.5 506,375 - MIT1002_00461 0.51 -0.4 506,437 - MIT1002_00461 0.55 +0.3 506,469 - MIT1002_00461 0.57 -0.2 506,494 - MIT1002_00461 0.59 -0.9 506,528 - MIT1002_00461 0.61 -0.4 506,540 + MIT1002_00461 0.62 -0.7 506,642 - MIT1002_00461 0.69 -1.2 506,717 + MIT1002_00461 0.74 +0.1 506,727 + MIT1002_00461 0.75 -0.0 506,753 - MIT1002_00461 0.76 -1.3 506,760 - MIT1002_00461 0.77 -0.1 506,796 - MIT1002_00461 0.79 -0.1 506,995 + -0.6 506,995 + -0.1 507,003 - -1.1 507,003 - -0.2 507,003 - +0.8 507,003 - -0.5 507,003 - +0.7 507,009 + +0.5 507,047 - -0.2 507,050 + +0.1 507,054 + -0.2 507,074 + +0.3 507,074 + -1.2 507,082 - -0.0 507,209 + +1.1 507,271 - +1.3 507,312 - +0.9 507,365 + +0.2 507,551 - +0.5 507,577 + -0.5 507,585 - -0.2 507,595 - -0.9 507,618 + -0.7 507,645 + -0.4 507,657 + +0.4 507,665 - +0.0 507,665 - +0.0 507,677 + MIT1002_00463 0.14 +1.0 507,840 + MIT1002_00463 0.77 -0.4 507,848 - MIT1002_00463 0.80 +0.2 507,854 - MIT1002_00463 0.83 +2.3 507,919 - -0.1 508,083 - -0.6
Or see this region's nucleotide sequence