Experiment: MHII_biocarbonate_Chelated; 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR41_RS06365 and RR41_RS06370 are separated by 146 nucleotides RR41_RS06370 and RR41_RS06375 are separated by 90 nucleotides RR41_RS06375 and RR41_RS06380 are separated by 26 nucleotides RR41_RS06380 and RR41_RS06385 are separated by 145 nucleotides
RR41_RS06365: RR41_RS06365 - D-glycerate dehydrogenase, at 1,326,256 to 1,327,221
_RS06365
RR41_RS06370: RR41_RS06370 - M48 family metalloprotease, at 1,327,368 to 1,328,795
_RS06370
RR41_RS06375: RR41_RS06375 - GatB/YqeY domain-containing protein, at 1,328,886 to 1,329,332
_RS06375
RR41_RS06380: RR41_RS06380 - 30S ribosomal protein S21, at 1,329,359 to 1,329,574
_RS06380
RR41_RS06385: RR41_RS06385 - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD, at 1,329,720 to 1,330,730
_RS06385
Position (kb)
1327
1328
1329 Strain fitness (log2 ratio)
-2
-1
0
1 at 1326.383 kb on + strand, within RR41_RS06365 at 1326.476 kb on + strand, within RR41_RS06365 at 1326.491 kb on - strand, within RR41_RS06365 at 1326.587 kb on + strand, within RR41_RS06365 at 1326.588 kb on - strand, within RR41_RS06365 at 1326.699 kb on + strand, within RR41_RS06365 at 1326.700 kb on - strand, within RR41_RS06365 at 1326.756 kb on + strand, within RR41_RS06365 at 1326.881 kb on + strand, within RR41_RS06365 at 1326.894 kb on + strand, within RR41_RS06365 at 1326.949 kb on - strand, within RR41_RS06365 at 1327.131 kb on + strand at 1327.311 kb on + strand at 1327.345 kb on + strand at 1327.539 kb on - strand, within RR41_RS06370 at 1327.606 kb on + strand, within RR41_RS06370 at 1327.650 kb on - strand, within RR41_RS06370 at 1327.987 kb on - strand, within RR41_RS06370 at 1327.987 kb on - strand, within RR41_RS06370 at 1327.988 kb on + strand, within RR41_RS06370 at 1328.045 kb on + strand, within RR41_RS06370 at 1328.166 kb on + strand, within RR41_RS06370 at 1328.167 kb on - strand, within RR41_RS06370 at 1328.196 kb on + strand, within RR41_RS06370 at 1328.419 kb on - strand, within RR41_RS06370 at 1328.494 kb on + strand, within RR41_RS06370 at 1328.508 kb on + strand, within RR41_RS06370 at 1328.582 kb on - strand, within RR41_RS06370 at 1328.828 kb on + strand at 1328.834 kb on + strand at 1328.838 kb on + strand at 1328.869 kb on + strand at 1328.871 kb on + strand at 1328.872 kb on - strand at 1329.105 kb on + strand, within RR41_RS06375 at 1329.244 kb on - strand, within RR41_RS06375 at 1329.244 kb on - strand, within RR41_RS06375 at 1329.377 kb on - strand at 1329.675 kb on - strand at 1329.675 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MHII_biocarbonate_Chelated; 30C remove 1,326,383 + RR41_RS06365 0.13 +0.9 1,326,476 + RR41_RS06365 0.23 +0.1 1,326,491 - RR41_RS06365 0.24 -0.3 1,326,587 + RR41_RS06365 0.34 -1.1 1,326,588 - RR41_RS06365 0.34 +0.4 1,326,699 + RR41_RS06365 0.46 +0.9 1,326,700 - RR41_RS06365 0.46 -1.3 1,326,756 + RR41_RS06365 0.52 -1.3 1,326,881 + RR41_RS06365 0.65 +1.7 1,326,894 + RR41_RS06365 0.66 +1.7 1,326,949 - RR41_RS06365 0.72 -0.9 1,327,131 + +0.3 1,327,311 + +1.3 1,327,345 + +1.1 1,327,539 - RR41_RS06370 0.12 +0.8 1,327,606 + RR41_RS06370 0.17 +0.2 1,327,650 - RR41_RS06370 0.20 +1.0 1,327,987 - RR41_RS06370 0.43 +1.7 1,327,987 - RR41_RS06370 0.43 -0.3 1,327,988 + RR41_RS06370 0.43 +1.7 1,328,045 + RR41_RS06370 0.47 +0.7 1,328,166 + RR41_RS06370 0.56 +0.4 1,328,167 - RR41_RS06370 0.56 +0.1 1,328,196 + RR41_RS06370 0.58 -1.3 1,328,419 - RR41_RS06370 0.74 +0.5 1,328,494 + RR41_RS06370 0.79 -2.7 1,328,508 + RR41_RS06370 0.80 +0.3 1,328,582 - RR41_RS06370 0.85 +0.9 1,328,828 + +0.7 1,328,834 + +1.7 1,328,838 + -2.2 1,328,869 + +1.7 1,328,871 + +0.2 1,328,872 - +0.4 1,329,105 + RR41_RS06375 0.49 -0.1 1,329,244 - RR41_RS06375 0.80 -1.7 1,329,244 - RR41_RS06375 0.80 -2.0 1,329,377 - -0.3 1,329,675 - -0.6 1,329,675 - -2.0
Or see this region's nucleotide sequence