Strain Fitness in Acinetobacter baumannii LAC-4 around RR41_RS06370

Experiment: MHII_biocarbonate_Chelated; 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR41_RS06365 and RR41_RS06370 are separated by 146 nucleotidesRR41_RS06370 and RR41_RS06375 are separated by 90 nucleotidesRR41_RS06375 and RR41_RS06380 are separated by 26 nucleotidesRR41_RS06380 and RR41_RS06385 are separated by 145 nucleotides RR41_RS06365: RR41_RS06365 - D-glycerate dehydrogenase, at 1,326,256 to 1,327,221 _RS06365 RR41_RS06370: RR41_RS06370 - M48 family metalloprotease, at 1,327,368 to 1,328,795 _RS06370 RR41_RS06375: RR41_RS06375 - GatB/YqeY domain-containing protein, at 1,328,886 to 1,329,332 _RS06375 RR41_RS06380: RR41_RS06380 - 30S ribosomal protein S21, at 1,329,359 to 1,329,574 _RS06380 RR41_RS06385: RR41_RS06385 - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD, at 1,329,720 to 1,330,730 _RS06385 Position (kb) 1327 1328 1329Strain fitness (log2 ratio) -2 -1 0 1at 1326.383 kb on + strand, within RR41_RS06365at 1326.476 kb on + strand, within RR41_RS06365at 1326.491 kb on - strand, within RR41_RS06365at 1326.587 kb on + strand, within RR41_RS06365at 1326.588 kb on - strand, within RR41_RS06365at 1326.699 kb on + strand, within RR41_RS06365at 1326.700 kb on - strand, within RR41_RS06365at 1326.756 kb on + strand, within RR41_RS06365at 1326.881 kb on + strand, within RR41_RS06365at 1326.894 kb on + strand, within RR41_RS06365at 1326.949 kb on - strand, within RR41_RS06365at 1327.131 kb on + strandat 1327.311 kb on + strandat 1327.345 kb on + strandat 1327.539 kb on - strand, within RR41_RS06370at 1327.606 kb on + strand, within RR41_RS06370at 1327.650 kb on - strand, within RR41_RS06370at 1327.987 kb on - strand, within RR41_RS06370at 1327.987 kb on - strand, within RR41_RS06370at 1327.988 kb on + strand, within RR41_RS06370at 1328.045 kb on + strand, within RR41_RS06370at 1328.166 kb on + strand, within RR41_RS06370at 1328.167 kb on - strand, within RR41_RS06370at 1328.196 kb on + strand, within RR41_RS06370at 1328.419 kb on - strand, within RR41_RS06370at 1328.494 kb on + strand, within RR41_RS06370at 1328.508 kb on + strand, within RR41_RS06370at 1328.582 kb on - strand, within RR41_RS06370at 1328.828 kb on + strandat 1328.834 kb on + strandat 1328.838 kb on + strandat 1328.869 kb on + strandat 1328.871 kb on + strandat 1328.872 kb on - strandat 1329.105 kb on + strand, within RR41_RS06375at 1329.244 kb on - strand, within RR41_RS06375at 1329.244 kb on - strand, within RR41_RS06375at 1329.377 kb on - strandat 1329.675 kb on - strandat 1329.675 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MHII_biocarbonate_Chelated; 30C
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1,326,383 + RR41_RS06365 0.13 +0.9
1,326,476 + RR41_RS06365 0.23 +0.1
1,326,491 - RR41_RS06365 0.24 -0.3
1,326,587 + RR41_RS06365 0.34 -1.1
1,326,588 - RR41_RS06365 0.34 +0.4
1,326,699 + RR41_RS06365 0.46 +0.9
1,326,700 - RR41_RS06365 0.46 -1.3
1,326,756 + RR41_RS06365 0.52 -1.3
1,326,881 + RR41_RS06365 0.65 +1.7
1,326,894 + RR41_RS06365 0.66 +1.7
1,326,949 - RR41_RS06365 0.72 -0.9
1,327,131 + +0.3
1,327,311 + +1.3
1,327,345 + +1.1
1,327,539 - RR41_RS06370 0.12 +0.8
1,327,606 + RR41_RS06370 0.17 +0.2
1,327,650 - RR41_RS06370 0.20 +1.0
1,327,987 - RR41_RS06370 0.43 +1.7
1,327,987 - RR41_RS06370 0.43 -0.3
1,327,988 + RR41_RS06370 0.43 +1.7
1,328,045 + RR41_RS06370 0.47 +0.7
1,328,166 + RR41_RS06370 0.56 +0.4
1,328,167 - RR41_RS06370 0.56 +0.1
1,328,196 + RR41_RS06370 0.58 -1.3
1,328,419 - RR41_RS06370 0.74 +0.5
1,328,494 + RR41_RS06370 0.79 -2.7
1,328,508 + RR41_RS06370 0.80 +0.3
1,328,582 - RR41_RS06370 0.85 +0.9
1,328,828 + +0.7
1,328,834 + +1.7
1,328,838 + -2.2
1,328,869 + +1.7
1,328,871 + +0.2
1,328,872 - +0.4
1,329,105 + RR41_RS06375 0.49 -0.1
1,329,244 - RR41_RS06375 0.80 -1.7
1,329,244 - RR41_RS06375 0.80 -2.0
1,329,377 - -0.3
1,329,675 - -0.6
1,329,675 - -2.0

Or see this region's nucleotide sequence