Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06303

Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06302 and MPMX19_06303 are separated by 789 nucleotidesMPMX19_06303 and MPMX19_06304 are separated by 55 nucleotidesMPMX19_06304 and MPMX19_06305 are separated by 38 nucleotides MPMX19_06302: MPMX19_06302 - tRNA-Arg, at 67,665 to 67,759 _06302 MPMX19_06303: MPMX19_06303 - hypothetical protein, at 68,549 to 69,277 _06303 MPMX19_06304: MPMX19_06304 - hypothetical protein, at 69,333 to 69,731 _06304 MPMX19_06305: MPMX19_06305 - hypothetical protein, at 69,770 to 70,318 _06305 Position (kb) 68 69 70Strain fitness (log2 ratio) -3 -2 -1 0 1at 67.766 kb on + strandat 67.766 kb on + strandat 67.766 kb on + strandat 67.767 kb on - strandat 67.865 kb on + strandat 68.482 kb on + strandat 68.482 kb on + strandat 68.482 kb on + strandat 68.482 kb on + strandat 68.482 kb on + strandat 68.482 kb on + strandat 68.482 kb on + strandat 68.483 kb on - strandat 68.483 kb on - strandat 68.483 kb on - strandat 68.483 kb on - strandat 68.483 kb on - strandat 68.483 kb on - strandat 68.483 kb on - strandat 68.483 kb on - strandat 68.483 kb on - strandat 68.483 kb on - strandat 68.483 kb on - strandat 68.968 kb on + strand, within MPMX19_06303at 68.968 kb on + strand, within MPMX19_06303at 68.968 kb on + strand, within MPMX19_06303at 68.969 kb on - strand, within MPMX19_06303at 69.096 kb on + strand, within MPMX19_06303at 69.096 kb on + strand, within MPMX19_06303at 69.096 kb on + strand, within MPMX19_06303at 69.096 kb on + strand, within MPMX19_06303at 69.096 kb on + strand, within MPMX19_06303at 69.096 kb on + strand, within MPMX19_06303at 69.096 kb on + strand, within MPMX19_06303at 69.096 kb on + strand, within MPMX19_06303at 69.096 kb on + strand, within MPMX19_06303at 69.096 kb on + strand, within MPMX19_06303at 69.096 kb on + strand, within MPMX19_06303at 69.097 kb on - strand, within MPMX19_06303at 69.097 kb on - strand, within MPMX19_06303at 69.097 kb on - strand, within MPMX19_06303at 69.097 kb on - strand, within MPMX19_06303at 69.097 kb on - strand, within MPMX19_06303at 69.097 kb on - strand, within MPMX19_06303at 69.097 kb on - strand, within MPMX19_06303at 69.097 kb on - strand, within MPMX19_06303at 69.097 kb on - strand, within MPMX19_06303at 69.097 kb on - strand, within MPMX19_06303at 69.097 kb on - strand, within MPMX19_06303at 69.097 kb on - strand, within MPMX19_06303at 69.097 kb on - strand, within MPMX19_06303at 69.111 kb on + strand, within MPMX19_06303at 69.253 kb on - strandat 69.253 kb on - strandat 69.253 kb on - strandat 69.253 kb on - strandat 69.744 kb on + strandat 69.744 kb on + strandat 70.002 kb on + strand, within MPMX19_06305at 70.002 kb on + strand, within MPMX19_06305at 70.003 kb on - strand, within MPMX19_06305

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
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67,766 + +0.1
67,766 + +0.3
67,766 + -2.1
67,767 - -0.8
67,865 + -0.7
68,482 + -1.1
68,482 + -0.4
68,482 + -0.1
68,482 + -0.6
68,482 + -0.3
68,482 + +0.8
68,482 + +0.2
68,483 - +0.6
68,483 - -2.3
68,483 - -1.6
68,483 - +0.1
68,483 - -0.5
68,483 - -0.3
68,483 - -0.0
68,483 - +1.7
68,483 - -0.6
68,483 - -1.0
68,483 - -0.5
68,968 + MPMX19_06303 0.57 -1.7
68,968 + MPMX19_06303 0.57 -0.9
68,968 + MPMX19_06303 0.57 -1.9
68,969 - MPMX19_06303 0.58 -1.7
69,096 + MPMX19_06303 0.75 -1.5
69,096 + MPMX19_06303 0.75 -0.1
69,096 + MPMX19_06303 0.75 -2.0
69,096 + MPMX19_06303 0.75 +0.5
69,096 + MPMX19_06303 0.75 -1.0
69,096 + MPMX19_06303 0.75 +0.7
69,096 + MPMX19_06303 0.75 -2.6
69,096 + MPMX19_06303 0.75 -0.8
69,096 + MPMX19_06303 0.75 -1.8
69,096 + MPMX19_06303 0.75 +0.5
69,096 + MPMX19_06303 0.75 -0.9
69,097 - MPMX19_06303 0.75 +0.2
69,097 - MPMX19_06303 0.75 -0.9
69,097 - MPMX19_06303 0.75 +0.7
69,097 - MPMX19_06303 0.75 -1.1
69,097 - MPMX19_06303 0.75 -3.1
69,097 - MPMX19_06303 0.75 -1.8
69,097 - MPMX19_06303 0.75 +0.1
69,097 - MPMX19_06303 0.75 +1.7
69,097 - MPMX19_06303 0.75 -0.4
69,097 - MPMX19_06303 0.75 +0.2
69,097 - MPMX19_06303 0.75 -2.4
69,097 - MPMX19_06303 0.75 -2.2
69,097 - MPMX19_06303 0.75 -1.2
69,111 + MPMX19_06303 0.77 -2.6
69,253 - +0.2
69,253 - -0.6
69,253 - +1.7
69,253 - +0.7
69,744 + -1.3
69,744 + -2.3
70,002 + MPMX19_06305 0.42 -0.7
70,002 + MPMX19_06305 0.42 -1.0
70,003 - MPMX19_06305 0.42 +0.9

Or see this region's nucleotide sequence