Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06228 and MPMX19_06229 are separated by 93 nucleotides MPMX19_06229 and MPMX19_06230 are separated by 374 nucleotides
MPMX19_06228: MPMX19_06228 - hypothetical protein, at 414,115 to 415,695
_06228
MPMX19_06229: MPMX19_06229 - L-arabonate dehydratase, at 415,789 to 417,627
_06229
MPMX19_06230: MPMX19_06230 - hypothetical protein, at 418,002 to 418,658
_06230
Position (kb) 415
416
417
418 Strain fitness (log2 ratio) -2
-1
0
1
2 at 415.754 kb on + strand at 415.754 kb on + strand at 415.754 kb on + strand at 415.755 kb on - strand at 415.755 kb on - strand at 415.755 kb on - strand at 415.755 kb on - strand at 415.788 kb on + strand at 415.788 kb on + strand at 415.788 kb on + strand at 415.788 kb on + strand at 415.788 kb on + strand at 415.788 kb on + strand at 415.788 kb on + strand at 415.788 kb on + strand at 415.788 kb on + strand at 415.788 kb on + strand at 415.788 kb on + strand at 415.788 kb on + strand at 415.789 kb on - strand at 415.789 kb on - strand at 415.789 kb on - strand at 415.789 kb on - strand at 415.789 kb on - strand at 415.789 kb on - strand at 415.789 kb on - strand at 415.789 kb on - strand at 415.789 kb on - strand at 415.789 kb on - strand at 415.789 kb on - strand at 415.909 kb on + strand at 415.909 kb on + strand at 415.909 kb on + strand at 415.909 kb on + strand at 415.909 kb on + strand at 415.909 kb on + strand at 415.909 kb on + strand at 415.909 kb on + strand at 415.910 kb on - strand at 415.910 kb on - strand at 415.910 kb on - strand at 415.910 kb on - strand at 415.910 kb on - strand at 415.910 kb on - strand at 415.910 kb on - strand at 415.910 kb on - strand at 415.910 kb on - strand at 415.921 kb on + strand at 415.921 kb on + strand at 416.149 kb on + strand, within MPMX19_06229 at 416.150 kb on - strand, within MPMX19_06229 at 416.150 kb on - strand, within MPMX19_06229 at 416.380 kb on + strand, within MPMX19_06229 at 416.380 kb on + strand, within MPMX19_06229 at 416.381 kb on - strand, within MPMX19_06229 at 416.381 kb on - strand, within MPMX19_06229 at 416.428 kb on + strand, within MPMX19_06229 at 416.428 kb on + strand, within MPMX19_06229 at 416.429 kb on - strand, within MPMX19_06229 at 416.429 kb on - strand, within MPMX19_06229 at 416.429 kb on - strand, within MPMX19_06229 at 416.545 kb on + strand, within MPMX19_06229 at 416.545 kb on + strand, within MPMX19_06229 at 416.545 kb on + strand, within MPMX19_06229 at 416.545 kb on + strand, within MPMX19_06229 at 416.545 kb on + strand, within MPMX19_06229 at 416.545 kb on + strand, within MPMX19_06229 at 416.545 kb on + strand, within MPMX19_06229 at 416.546 kb on - strand, within MPMX19_06229 at 416.546 kb on - strand, within MPMX19_06229 at 416.546 kb on - strand, within MPMX19_06229 at 416.546 kb on - strand, within MPMX19_06229 at 416.785 kb on + strand, within MPMX19_06229 at 416.785 kb on + strand, within MPMX19_06229 at 416.786 kb on - strand, within MPMX19_06229 at 417.055 kb on + strand, within MPMX19_06229 at 417.055 kb on + strand, within MPMX19_06229 at 417.055 kb on + strand, within MPMX19_06229 at 417.055 kb on + strand, within MPMX19_06229 at 417.055 kb on + strand, within MPMX19_06229 at 417.056 kb on - strand, within MPMX19_06229 at 417.056 kb on - strand, within MPMX19_06229 at 417.056 kb on - strand, within MPMX19_06229 at 417.056 kb on - strand, within MPMX19_06229 at 417.056 kb on - strand, within MPMX19_06229 at 417.056 kb on - strand, within MPMX19_06229 at 417.056 kb on - strand, within MPMX19_06229 at 417.124 kb on + strand, within MPMX19_06229 at 417.124 kb on + strand, within MPMX19_06229 at 417.124 kb on + strand, within MPMX19_06229 at 417.124 kb on + strand, within MPMX19_06229 at 417.124 kb on + strand, within MPMX19_06229 at 417.124 kb on + strand, within MPMX19_06229 at 417.124 kb on + strand, within MPMX19_06229 at 417.125 kb on - strand, within MPMX19_06229 at 417.125 kb on - strand, within MPMX19_06229 at 417.125 kb on - strand, within MPMX19_06229 at 417.125 kb on - strand, within MPMX19_06229 at 417.125 kb on - strand, within MPMX19_06229 at 417.125 kb on - strand, within MPMX19_06229 at 417.125 kb on - strand, within MPMX19_06229 at 417.125 kb on - strand, within MPMX19_06229 at 417.125 kb on - strand, within MPMX19_06229 at 417.125 kb on - strand, within MPMX19_06229 at 417.125 kb on - strand, within MPMX19_06229 at 417.166 kb on + strand, within MPMX19_06229 at 417.166 kb on + strand, within MPMX19_06229 at 417.166 kb on + strand, within MPMX19_06229 at 417.166 kb on + strand, within MPMX19_06229 at 417.166 kb on + strand, within MPMX19_06229 at 417.166 kb on + strand, within MPMX19_06229 at 417.166 kb on + strand, within MPMX19_06229 at 417.167 kb on - strand, within MPMX19_06229 at 417.167 kb on - strand, within MPMX19_06229 at 417.167 kb on - strand, within MPMX19_06229 at 417.167 kb on - strand, within MPMX19_06229 at 417.167 kb on - strand, within MPMX19_06229 at 417.167 kb on - strand, within MPMX19_06229 at 417.167 kb on - strand, within MPMX19_06229 at 417.167 kb on - strand, within MPMX19_06229 at 417.580 kb on + strand at 417.580 kb on + strand at 417.580 kb on + strand at 417.580 kb on + strand at 417.580 kb on + strand at 417.581 kb on - strand at 417.581 kb on - strand at 417.581 kb on - strand at 417.581 kb on - strand at 417.770 kb on - strand at 417.770 kb on - strand at 417.770 kb on - strand at 417.770 kb on - strand at 417.770 kb on - strand at 417.777 kb on + strand at 417.777 kb on + strand at 417.899 kb on + strand at 417.899 kb on + strand at 417.899 kb on + strand at 417.899 kb on + strand at 417.899 kb on + strand at 417.899 kb on + strand at 417.899 kb on + strand at 417.899 kb on + strand at 417.900 kb on - strand at 417.900 kb on - strand at 417.900 kb on - strand at 417.900 kb on - strand at 417.900 kb on - strand at 417.900 kb on - strand at 417.900 kb on - strand at 417.900 kb on - strand at 417.900 kb on - strand at 417.906 kb on - strand at 417.912 kb on + strand at 417.943 kb on + strand at 417.944 kb on - strand at 418.281 kb on - strand, within MPMX19_06230 at 418.281 kb on - strand, within MPMX19_06230 at 418.281 kb on - strand, within MPMX19_06230 at 418.513 kb on + strand, within MPMX19_06230 at 418.522 kb on + strand, within MPMX19_06230 at 418.613 kb on + strand at 418.614 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 415,754 + -0.1 415,754 + -1.9 415,754 + -0.2 415,755 - -2.4 415,755 - +0.8 415,755 - -1.0 415,755 - +1.0 415,788 + -1.2 415,788 + -1.2 415,788 + -1.0 415,788 + -0.6 415,788 + -1.0 415,788 + -1.1 415,788 + +0.7 415,788 + -0.4 415,788 + -0.4 415,788 + -2.2 415,788 + +0.8 415,788 + -0.5 415,789 - -0.4 415,789 - -0.1 415,789 - -1.1 415,789 - +0.0 415,789 - -0.5 415,789 - +0.6 415,789 - -0.5 415,789 - -0.2 415,789 - -1.1 415,789 - +0.4 415,789 - +0.6 415,909 + -1.8 415,909 + -2.2 415,909 + -1.2 415,909 + +0.0 415,909 + -0.3 415,909 + -1.4 415,909 + +1.0 415,909 + +1.6 415,910 - +0.4 415,910 - +0.1 415,910 - -1.2 415,910 - -0.1 415,910 - +1.2 415,910 - +0.4 415,910 - -1.2 415,910 - -0.2 415,910 - -0.0 415,921 + -1.0 415,921 + -0.2 416,149 + MPMX19_06229 0.20 -0.7 416,150 - MPMX19_06229 0.20 -0.2 416,150 - MPMX19_06229 0.20 +0.8 416,380 + MPMX19_06229 0.32 -1.4 416,380 + MPMX19_06229 0.32 -2.0 416,381 - MPMX19_06229 0.32 +0.9 416,381 - MPMX19_06229 0.32 +0.9 416,428 + MPMX19_06229 0.35 -2.0 416,428 + MPMX19_06229 0.35 +0.6 416,429 - MPMX19_06229 0.35 -0.2 416,429 - MPMX19_06229 0.35 -0.2 416,429 - MPMX19_06229 0.35 -0.3 416,545 + MPMX19_06229 0.41 +0.0 416,545 + MPMX19_06229 0.41 -0.7 416,545 + MPMX19_06229 0.41 -0.5 416,545 + MPMX19_06229 0.41 +0.5 416,545 + MPMX19_06229 0.41 -0.2 416,545 + MPMX19_06229 0.41 +0.0 416,545 + MPMX19_06229 0.41 -1.6 416,546 - MPMX19_06229 0.41 +0.2 416,546 - MPMX19_06229 0.41 +1.2 416,546 - MPMX19_06229 0.41 +0.0 416,546 - MPMX19_06229 0.41 -1.4 416,785 + MPMX19_06229 0.54 -1.4 416,785 + MPMX19_06229 0.54 -0.1 416,786 - MPMX19_06229 0.54 +1.3 417,055 + MPMX19_06229 0.69 +0.6 417,055 + MPMX19_06229 0.69 +0.3 417,055 + MPMX19_06229 0.69 +0.4 417,055 + MPMX19_06229 0.69 -1.1 417,055 + MPMX19_06229 0.69 -0.7 417,056 - MPMX19_06229 0.69 +1.0 417,056 - MPMX19_06229 0.69 -0.5 417,056 - MPMX19_06229 0.69 +0.5 417,056 - MPMX19_06229 0.69 -1.4 417,056 - MPMX19_06229 0.69 -1.0 417,056 - MPMX19_06229 0.69 -0.9 417,056 - MPMX19_06229 0.69 +0.0 417,124 + MPMX19_06229 0.73 +0.0 417,124 + MPMX19_06229 0.73 -0.7 417,124 + MPMX19_06229 0.73 -0.8 417,124 + MPMX19_06229 0.73 +1.6 417,124 + MPMX19_06229 0.73 +0.8 417,124 + MPMX19_06229 0.73 -0.7 417,124 + MPMX19_06229 0.73 -1.0 417,125 - MPMX19_06229 0.73 +0.0 417,125 - MPMX19_06229 0.73 -1.0 417,125 - MPMX19_06229 0.73 -0.8 417,125 - MPMX19_06229 0.73 -0.1 417,125 - MPMX19_06229 0.73 +1.0 417,125 - MPMX19_06229 0.73 +0.5 417,125 - MPMX19_06229 0.73 +0.2 417,125 - MPMX19_06229 0.73 +0.5 417,125 - MPMX19_06229 0.73 +0.0 417,125 - MPMX19_06229 0.73 -1.3 417,125 - MPMX19_06229 0.73 -1.4 417,166 + MPMX19_06229 0.75 +0.2 417,166 + MPMX19_06229 0.75 +2.5 417,166 + MPMX19_06229 0.75 -1.3 417,166 + MPMX19_06229 0.75 -0.5 417,166 + MPMX19_06229 0.75 -1.5 417,166 + MPMX19_06229 0.75 -2.6 417,166 + MPMX19_06229 0.75 -2.5 417,167 - MPMX19_06229 0.75 -0.4 417,167 - MPMX19_06229 0.75 -1.4 417,167 - MPMX19_06229 0.75 +0.1 417,167 - MPMX19_06229 0.75 +0.4 417,167 - MPMX19_06229 0.75 +0.3 417,167 - MPMX19_06229 0.75 -0.8 417,167 - MPMX19_06229 0.75 +0.5 417,167 - MPMX19_06229 0.75 -0.5 417,580 + +0.8 417,580 + +0.6 417,580 + -0.1 417,580 + +0.7 417,580 + -0.5 417,581 - -0.1 417,581 - -0.4 417,581 - -2.1 417,581 - -0.4 417,770 - +0.4 417,770 - -1.2 417,770 - -0.9 417,770 - +2.4 417,770 - -0.4 417,777 + -0.5 417,777 + +0.6 417,899 + -0.4 417,899 + +0.4 417,899 + -1.0 417,899 + +0.0 417,899 + -0.4 417,899 + +0.2 417,899 + +0.5 417,899 + +0.1 417,900 - +0.1 417,900 - -0.6 417,900 - +1.2 417,900 - -0.9 417,900 - +0.6 417,900 - -0.5 417,900 - -0.9 417,900 - -2.0 417,900 - -1.2 417,906 - +1.0 417,912 + -0.1 417,943 + -1.5 417,944 - +0.4 418,281 - MPMX19_06230 0.42 +0.6 418,281 - MPMX19_06230 0.42 +0.0 418,281 - MPMX19_06230 0.42 -1.0 418,513 + MPMX19_06230 0.78 -0.2 418,522 + MPMX19_06230 0.79 -0.2 418,613 + +0.0 418,614 - -0.4
Or see this region's nucleotide sequence