Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05995 and MPMX19_05996 are separated by 114 nucleotides MPMX19_05996 and MPMX19_05997 are separated by 55 nucleotides MPMX19_05997 and MPMX19_05998 overlap by 4 nucleotides
MPMX19_05995: MPMX19_05995 - hypothetical protein, at 148,982 to 150,598
_05995
MPMX19_05996: MPMX19_05996 - Dodecaprenyl-phosphate galacturonate synthase, at 150,713 to 151,474
_05996
MPMX19_05997: MPMX19_05997 - hypothetical protein, at 151,530 to 151,865
_05997
MPMX19_05998: MPMX19_05998 - Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase, at 151,862 to 153,568
_05998
Position (kb) 151
152 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 150.551 kb on + strand at 150.551 kb on + strand at 150.551 kb on + strand at 150.551 kb on + strand at 150.551 kb on + strand at 150.551 kb on + strand at 150.551 kb on + strand at 150.551 kb on + strand at 150.551 kb on + strand at 150.551 kb on + strand at 150.551 kb on + strand at 150.551 kb on + strand at 150.551 kb on + strand at 150.552 kb on - strand at 150.552 kb on - strand at 150.552 kb on - strand at 150.552 kb on - strand at 150.552 kb on - strand at 150.552 kb on - strand at 150.552 kb on - strand at 150.552 kb on - strand at 150.552 kb on - strand at 150.552 kb on - strand at 150.552 kb on - strand at 150.552 kb on - strand at 150.552 kb on - strand at 150.552 kb on - strand at 150.586 kb on + strand at 150.596 kb on + strand at 150.597 kb on - strand at 150.597 kb on - strand at 150.597 kb on - strand at 150.597 kb on - strand at 150.597 kb on - strand at 150.597 kb on - strand at 150.738 kb on - strand at 151.328 kb on + strand, within MPMX19_05996 at 151.328 kb on + strand, within MPMX19_05996 at 151.328 kb on + strand, within MPMX19_05996 at 151.328 kb on + strand, within MPMX19_05996 at 151.328 kb on + strand, within MPMX19_05996 at 151.328 kb on + strand, within MPMX19_05996 at 151.328 kb on + strand, within MPMX19_05996 at 151.328 kb on + strand, within MPMX19_05996 at 151.328 kb on + strand, within MPMX19_05996 at 151.328 kb on + strand, within MPMX19_05996 at 151.328 kb on + strand, within MPMX19_05996 at 151.328 kb on + strand, within MPMX19_05996 at 151.328 kb on + strand, within MPMX19_05996 at 151.329 kb on - strand, within MPMX19_05996 at 151.329 kb on - strand, within MPMX19_05996 at 151.373 kb on + strand, within MPMX19_05996 at 151.373 kb on + strand, within MPMX19_05996 at 151.373 kb on + strand, within MPMX19_05996 at 151.424 kb on + strand at 151.424 kb on + strand at 151.692 kb on + strand, within MPMX19_05997 at 151.693 kb on - strand, within MPMX19_05997 at 151.729 kb on - strand, within MPMX19_05997 at 151.738 kb on - strand, within MPMX19_05997 at 151.788 kb on + strand, within MPMX19_05997 at 151.789 kb on - strand, within MPMX19_05997 at 151.803 kb on + strand, within MPMX19_05997 at 151.804 kb on - strand, within MPMX19_05997 at 151.804 kb on - strand, within MPMX19_05997 at 151.804 kb on - strand, within MPMX19_05997 at 151.922 kb on + strand at 151.922 kb on + strand at 151.922 kb on + strand at 151.922 kb on + strand at 151.922 kb on + strand at 151.922 kb on + strand at 151.922 kb on + strand at 151.923 kb on - strand at 152.045 kb on + strand, within MPMX19_05998 at 152.045 kb on + strand, within MPMX19_05998 at 152.045 kb on + strand, within MPMX19_05998 at 152.045 kb on + strand, within MPMX19_05998 at 152.045 kb on + strand, within MPMX19_05998 at 152.045 kb on + strand, within MPMX19_05998 at 152.045 kb on + strand, within MPMX19_05998 at 152.045 kb on + strand, within MPMX19_05998 at 152.045 kb on + strand, within MPMX19_05998 at 152.045 kb on + strand, within MPMX19_05998 at 152.045 kb on + strand, within MPMX19_05998 at 152.045 kb on + strand, within MPMX19_05998 at 152.045 kb on + strand, within MPMX19_05998 at 152.046 kb on - strand, within MPMX19_05998 at 152.046 kb on - strand, within MPMX19_05998 at 152.046 kb on - strand, within MPMX19_05998 at 152.046 kb on - strand, within MPMX19_05998 at 152.046 kb on - strand, within MPMX19_05998 at 152.046 kb on - strand, within MPMX19_05998 at 152.046 kb on - strand, within MPMX19_05998 at 152.046 kb on - strand, within MPMX19_05998 at 152.046 kb on - strand, within MPMX19_05998 at 152.046 kb on - strand, within MPMX19_05998 at 152.046 kb on - strand, within MPMX19_05998 at 152.046 kb on - strand, within MPMX19_05998 at 152.099 kb on + strand, within MPMX19_05998 at 152.100 kb on - strand, within MPMX19_05998 at 152.100 kb on - strand, within MPMX19_05998 at 152.387 kb on + strand, within MPMX19_05998 at 152.388 kb on - strand, within MPMX19_05998 at 152.388 kb on - strand, within MPMX19_05998 at 152.729 kb on + strand, within MPMX19_05998 at 152.729 kb on + strand, within MPMX19_05998 at 152.730 kb on - strand, within MPMX19_05998 at 152.737 kb on + strand, within MPMX19_05998 at 152.738 kb on - strand, within MPMX19_05998
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 150,551 + -1.0 150,551 + +0.8 150,551 + -0.6 150,551 + +1.0 150,551 + -1.3 150,551 + +1.2 150,551 + +0.8 150,551 + -1.0 150,551 + -1.4 150,551 + +0.9 150,551 + -0.6 150,551 + +1.0 150,551 + -0.2 150,552 - -1.2 150,552 - -2.8 150,552 - +0.6 150,552 - +0.1 150,552 - -0.4 150,552 - +0.2 150,552 - +0.4 150,552 - +0.1 150,552 - -0.4 150,552 - -0.4 150,552 - +0.1 150,552 - -0.1 150,552 - -1.5 150,552 - -1.4 150,586 + -0.9 150,596 + -1.0 150,597 - -0.2 150,597 - +0.4 150,597 - +0.4 150,597 - +0.8 150,597 - +0.9 150,597 - -0.7 150,738 - -0.8 151,328 + MPMX19_05996 0.81 +0.1 151,328 + MPMX19_05996 0.81 +0.1 151,328 + MPMX19_05996 0.81 -1.5 151,328 + MPMX19_05996 0.81 -0.4 151,328 + MPMX19_05996 0.81 -1.9 151,328 + MPMX19_05996 0.81 -2.2 151,328 + MPMX19_05996 0.81 +0.8 151,328 + MPMX19_05996 0.81 -1.8 151,328 + MPMX19_05996 0.81 -0.7 151,328 + MPMX19_05996 0.81 +1.9 151,328 + MPMX19_05996 0.81 -0.5 151,328 + MPMX19_05996 0.81 -0.0 151,328 + MPMX19_05996 0.81 -0.7 151,329 - MPMX19_05996 0.81 +2.6 151,329 - MPMX19_05996 0.81 +0.3 151,373 + MPMX19_05996 0.87 -1.5 151,373 + MPMX19_05996 0.87 -0.1 151,373 + MPMX19_05996 0.87 +2.3 151,424 + -0.5 151,424 + -0.1 151,692 + MPMX19_05997 0.48 -2.8 151,693 - MPMX19_05997 0.49 -2.5 151,729 - MPMX19_05997 0.59 -2.3 151,738 - MPMX19_05997 0.62 -0.9 151,788 + MPMX19_05997 0.77 +1.2 151,789 - MPMX19_05997 0.77 -0.5 151,803 + MPMX19_05997 0.81 -1.2 151,804 - MPMX19_05997 0.82 +0.3 151,804 - MPMX19_05997 0.82 -2.1 151,804 - MPMX19_05997 0.82 +0.6 151,922 + +0.4 151,922 + +0.8 151,922 + -1.1 151,922 + +1.6 151,922 + -0.2 151,922 + +0.3 151,922 + +2.5 151,923 - +1.4 152,045 + MPMX19_05998 0.11 +1.4 152,045 + MPMX19_05998 0.11 -2.7 152,045 + MPMX19_05998 0.11 -0.9 152,045 + MPMX19_05998 0.11 -1.2 152,045 + MPMX19_05998 0.11 +0.6 152,045 + MPMX19_05998 0.11 +0.2 152,045 + MPMX19_05998 0.11 +0.6 152,045 + MPMX19_05998 0.11 +0.1 152,045 + MPMX19_05998 0.11 +1.1 152,045 + MPMX19_05998 0.11 -0.6 152,045 + MPMX19_05998 0.11 -1.5 152,045 + MPMX19_05998 0.11 -0.5 152,045 + MPMX19_05998 0.11 -0.7 152,046 - MPMX19_05998 0.11 -1.2 152,046 - MPMX19_05998 0.11 +0.4 152,046 - MPMX19_05998 0.11 -0.8 152,046 - MPMX19_05998 0.11 -0.7 152,046 - MPMX19_05998 0.11 -0.4 152,046 - MPMX19_05998 0.11 -0.7 152,046 - MPMX19_05998 0.11 +0.6 152,046 - MPMX19_05998 0.11 -0.2 152,046 - MPMX19_05998 0.11 -0.4 152,046 - MPMX19_05998 0.11 -0.5 152,046 - MPMX19_05998 0.11 -1.2 152,046 - MPMX19_05998 0.11 -0.1 152,099 + MPMX19_05998 0.14 -0.4 152,100 - MPMX19_05998 0.14 -0.9 152,100 - MPMX19_05998 0.14 -0.9 152,387 + MPMX19_05998 0.31 -1.5 152,388 - MPMX19_05998 0.31 +1.1 152,388 - MPMX19_05998 0.31 -0.7 152,729 + MPMX19_05998 0.51 +0.3 152,729 + MPMX19_05998 0.51 +0.1 152,730 - MPMX19_05998 0.51 -0.5 152,737 + MPMX19_05998 0.51 -1.9 152,738 - MPMX19_05998 0.51 +0.5
Or see this region's nucleotide sequence