Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05930 and MPMX19_05931 are separated by 238 nucleotides MPMX19_05931 and MPMX19_05932 are separated by 728 nucleotides
MPMX19_05929: MPMX19_05929 - Siroheme synthase, at 67,861 to 68,862
_05929
MPMX19_05930: MPMX19_05930 - Dipeptidyl-peptidase 6, at 68,758 to 69,546
_05930
MPMX19_05931: MPMX19_05931 - Lysine 6-dehydrogenase, at 69,785 to 70,864
_05931
MPMX19_05932: MPMX19_05932 - Bifunctional protein PutA, at 71,593 to 75,351
_05932
Position (kb) 69
70
71 Strain fitness (log2 ratio) -2
-1
0
1
2 at 69.110 kb on + strand, within MPMX19_05930 at 69.110 kb on + strand, within MPMX19_05930 at 69.110 kb on + strand, within MPMX19_05930 at 69.110 kb on + strand, within MPMX19_05930 at 69.110 kb on + strand, within MPMX19_05930 at 69.111 kb on - strand, within MPMX19_05930 at 69.111 kb on - strand, within MPMX19_05930 at 69.111 kb on - strand, within MPMX19_05930 at 69.111 kb on - strand, within MPMX19_05930 at 69.199 kb on + strand, within MPMX19_05930 at 69.199 kb on + strand, within MPMX19_05930 at 69.200 kb on - strand, within MPMX19_05930 at 69.200 kb on - strand, within MPMX19_05930 at 69.200 kb on - strand, within MPMX19_05930 at 69.200 kb on - strand, within MPMX19_05930 at 69.200 kb on - strand, within MPMX19_05930 at 69.200 kb on - strand, within MPMX19_05930 at 69.200 kb on - strand, within MPMX19_05930 at 69.584 kb on + strand at 69.584 kb on + strand at 69.585 kb on - strand at 69.613 kb on + strand at 69.905 kb on + strand, within MPMX19_05931 at 69.999 kb on + strand, within MPMX19_05931 at 69.999 kb on + strand, within MPMX19_05931 at 69.999 kb on + strand, within MPMX19_05931 at 69.999 kb on + strand, within MPMX19_05931 at 69.999 kb on + strand, within MPMX19_05931 at 70.000 kb on - strand, within MPMX19_05931 at 70.000 kb on - strand, within MPMX19_05931 at 70.000 kb on - strand, within MPMX19_05931 at 70.000 kb on - strand, within MPMX19_05931 at 70.000 kb on - strand, within MPMX19_05931 at 70.064 kb on + strand, within MPMX19_05931 at 70.064 kb on + strand, within MPMX19_05931 at 70.064 kb on + strand, within MPMX19_05931 at 70.064 kb on + strand, within MPMX19_05931 at 70.064 kb on + strand, within MPMX19_05931 at 70.064 kb on + strand, within MPMX19_05931 at 70.065 kb on - strand, within MPMX19_05931 at 70.065 kb on - strand, within MPMX19_05931 at 70.250 kb on + strand, within MPMX19_05931 at 70.271 kb on + strand, within MPMX19_05931 at 70.271 kb on + strand, within MPMX19_05931 at 70.271 kb on + strand, within MPMX19_05931 at 70.271 kb on + strand, within MPMX19_05931 at 70.271 kb on + strand, within MPMX19_05931 at 70.271 kb on + strand, within MPMX19_05931 at 70.271 kb on + strand, within MPMX19_05931 at 70.271 kb on + strand, within MPMX19_05931 at 70.271 kb on + strand, within MPMX19_05931 at 70.272 kb on - strand, within MPMX19_05931 at 70.272 kb on - strand, within MPMX19_05931 at 70.272 kb on - strand, within MPMX19_05931 at 70.272 kb on - strand, within MPMX19_05931 at 70.272 kb on - strand, within MPMX19_05931 at 70.310 kb on + strand, within MPMX19_05931 at 70.310 kb on + strand, within MPMX19_05931 at 70.310 kb on + strand, within MPMX19_05931 at 70.310 kb on + strand, within MPMX19_05931 at 70.311 kb on - strand, within MPMX19_05931 at 70.311 kb on - strand, within MPMX19_05931 at 70.311 kb on - strand, within MPMX19_05931 at 70.403 kb on + strand, within MPMX19_05931 at 70.403 kb on + strand, within MPMX19_05931 at 70.403 kb on + strand, within MPMX19_05931 at 70.403 kb on + strand, within MPMX19_05931 at 70.403 kb on + strand, within MPMX19_05931 at 70.404 kb on - strand, within MPMX19_05931 at 70.404 kb on - strand, within MPMX19_05931 at 70.478 kb on + strand, within MPMX19_05931 at 70.478 kb on + strand, within MPMX19_05931 at 70.478 kb on + strand, within MPMX19_05931 at 70.478 kb on + strand, within MPMX19_05931 at 70.478 kb on + strand, within MPMX19_05931 at 70.478 kb on + strand, within MPMX19_05931 at 70.479 kb on - strand, within MPMX19_05931 at 70.479 kb on - strand, within MPMX19_05931 at 70.479 kb on - strand, within MPMX19_05931 at 70.682 kb on + strand, within MPMX19_05931 at 70.682 kb on + strand, within MPMX19_05931 at 70.682 kb on + strand, within MPMX19_05931 at 70.682 kb on + strand, within MPMX19_05931 at 70.682 kb on + strand, within MPMX19_05931 at 70.682 kb on + strand, within MPMX19_05931 at 70.683 kb on - strand, within MPMX19_05931 at 70.683 kb on - strand, within MPMX19_05931 at 70.683 kb on - strand, within MPMX19_05931 at 70.683 kb on - strand, within MPMX19_05931 at 70.683 kb on - strand, within MPMX19_05931 at 70.683 kb on - strand, within MPMX19_05931 at 70.853 kb on + strand at 70.853 kb on + strand at 70.853 kb on + strand at 70.854 kb on - strand at 70.854 kb on - strand at 70.854 kb on - strand at 70.854 kb on - strand at 70.854 kb on - strand at 70.854 kb on - strand at 71.005 kb on + strand at 71.005 kb on + strand at 71.005 kb on + strand at 71.005 kb on + strand at 71.005 kb on + strand at 71.005 kb on + strand at 71.005 kb on + strand at 71.005 kb on + strand at 71.005 kb on + strand at 71.005 kb on + strand at 71.005 kb on + strand at 71.005 kb on + strand at 71.005 kb on + strand at 71.005 kb on + strand at 71.005 kb on + strand at 71.005 kb on + strand at 71.005 kb on + strand at 71.005 kb on + strand at 71.005 kb on + strand at 71.005 kb on + strand at 71.005 kb on + strand at 71.005 kb on + strand at 71.006 kb on - strand at 71.006 kb on - strand at 71.006 kb on - strand at 71.006 kb on - strand at 71.006 kb on - strand at 71.006 kb on - strand at 71.006 kb on - strand at 71.006 kb on - strand at 71.006 kb on - strand at 71.006 kb on - strand at 71.006 kb on - strand at 71.006 kb on - strand at 71.006 kb on - strand at 71.006 kb on - strand at 71.006 kb on - strand at 71.006 kb on - strand at 71.006 kb on - strand at 71.261 kb on + strand at 71.262 kb on - strand at 71.262 kb on - strand at 71.426 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 69,110 + MPMX19_05930 0.45 -0.7 69,110 + MPMX19_05930 0.45 -0.7 69,110 + MPMX19_05930 0.45 +1.9 69,110 + MPMX19_05930 0.45 +1.6 69,110 + MPMX19_05930 0.45 +1.6 69,111 - MPMX19_05930 0.45 -0.2 69,111 - MPMX19_05930 0.45 -1.8 69,111 - MPMX19_05930 0.45 +1.2 69,111 - MPMX19_05930 0.45 -0.2 69,199 + MPMX19_05930 0.56 -0.4 69,199 + MPMX19_05930 0.56 +0.1 69,200 - MPMX19_05930 0.56 +0.8 69,200 - MPMX19_05930 0.56 -0.4 69,200 - MPMX19_05930 0.56 -1.2 69,200 - MPMX19_05930 0.56 -0.1 69,200 - MPMX19_05930 0.56 +1.2 69,200 - MPMX19_05930 0.56 +1.1 69,200 - MPMX19_05930 0.56 -0.1 69,584 + -0.7 69,584 + +0.4 69,585 - -0.6 69,613 + -1.2 69,905 + MPMX19_05931 0.11 -0.7 69,999 + MPMX19_05931 0.20 -0.3 69,999 + MPMX19_05931 0.20 -1.2 69,999 + MPMX19_05931 0.20 +0.1 69,999 + MPMX19_05931 0.20 -0.1 69,999 + MPMX19_05931 0.20 +0.3 70,000 - MPMX19_05931 0.20 +2.6 70,000 - MPMX19_05931 0.20 +0.6 70,000 - MPMX19_05931 0.20 -1.5 70,000 - MPMX19_05931 0.20 +2.6 70,000 - MPMX19_05931 0.20 -0.1 70,064 + MPMX19_05931 0.26 -1.2 70,064 + MPMX19_05931 0.26 -0.7 70,064 + MPMX19_05931 0.26 -0.4 70,064 + MPMX19_05931 0.26 +0.1 70,064 + MPMX19_05931 0.26 -0.2 70,064 + MPMX19_05931 0.26 +2.6 70,065 - MPMX19_05931 0.26 +0.3 70,065 - MPMX19_05931 0.26 +0.2 70,250 + MPMX19_05931 0.43 -0.1 70,271 + MPMX19_05931 0.45 -2.2 70,271 + MPMX19_05931 0.45 -0.9 70,271 + MPMX19_05931 0.45 -0.9 70,271 + MPMX19_05931 0.45 -0.4 70,271 + MPMX19_05931 0.45 +1.6 70,271 + MPMX19_05931 0.45 +0.6 70,271 + MPMX19_05931 0.45 +1.2 70,271 + MPMX19_05931 0.45 +0.4 70,271 + MPMX19_05931 0.45 -0.5 70,272 - MPMX19_05931 0.45 +0.1 70,272 - MPMX19_05931 0.45 -0.7 70,272 - MPMX19_05931 0.45 +0.3 70,272 - MPMX19_05931 0.45 +0.6 70,272 - MPMX19_05931 0.45 +0.8 70,310 + MPMX19_05931 0.49 -1.2 70,310 + MPMX19_05931 0.49 -2.6 70,310 + MPMX19_05931 0.49 -1.3 70,310 + MPMX19_05931 0.49 -1.7 70,311 - MPMX19_05931 0.49 -0.5 70,311 - MPMX19_05931 0.49 -0.9 70,311 - MPMX19_05931 0.49 -0.9 70,403 + MPMX19_05931 0.57 -0.8 70,403 + MPMX19_05931 0.57 +0.1 70,403 + MPMX19_05931 0.57 -0.9 70,403 + MPMX19_05931 0.57 -1.2 70,403 + MPMX19_05931 0.57 -0.4 70,404 - MPMX19_05931 0.57 +0.9 70,404 - MPMX19_05931 0.57 -1.2 70,478 + MPMX19_05931 0.64 -0.8 70,478 + MPMX19_05931 0.64 -0.9 70,478 + MPMX19_05931 0.64 +1.4 70,478 + MPMX19_05931 0.64 +0.1 70,478 + MPMX19_05931 0.64 -0.1 70,478 + MPMX19_05931 0.64 -0.8 70,479 - MPMX19_05931 0.64 -0.9 70,479 - MPMX19_05931 0.64 -0.1 70,479 - MPMX19_05931 0.64 +1.6 70,682 + MPMX19_05931 0.83 +0.4 70,682 + MPMX19_05931 0.83 -1.7 70,682 + MPMX19_05931 0.83 -1.9 70,682 + MPMX19_05931 0.83 -0.9 70,682 + MPMX19_05931 0.83 +2.2 70,682 + MPMX19_05931 0.83 -0.2 70,683 - MPMX19_05931 0.83 +1.3 70,683 - MPMX19_05931 0.83 -0.4 70,683 - MPMX19_05931 0.83 -2.7 70,683 - MPMX19_05931 0.83 -0.4 70,683 - MPMX19_05931 0.83 +1.4 70,683 - MPMX19_05931 0.83 -1.2 70,853 + +0.6 70,853 + -0.4 70,853 + -1.5 70,854 - +0.1 70,854 - -0.4 70,854 - +0.1 70,854 - +0.8 70,854 - -1.0 70,854 - +1.1 71,005 + -0.4 71,005 + +0.1 71,005 + -0.5 71,005 + -1.4 71,005 + +0.8 71,005 + -1.4 71,005 + -0.0 71,005 + -1.8 71,005 + -0.6 71,005 + -0.8 71,005 + +0.5 71,005 + +1.6 71,005 + +1.2 71,005 + -1.5 71,005 + +2.0 71,005 + -1.1 71,005 + -0.9 71,005 + -0.2 71,005 + +0.9 71,005 + +0.8 71,005 + +0.5 71,005 + -0.9 71,006 - -0.5 71,006 - -0.1 71,006 - -1.4 71,006 - +0.1 71,006 - +1.4 71,006 - +2.0 71,006 - -0.5 71,006 - -1.4 71,006 - +0.8 71,006 - -1.9 71,006 - +0.3 71,006 - -0.7 71,006 - -0.7 71,006 - +0.9 71,006 - +0.1 71,006 - +0.5 71,006 - +0.4 71,261 + +1.6 71,262 - -1.8 71,262 - -0.0 71,426 - +0.4
Or see this region's nucleotide sequence