Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05820 and MPMX19_05821 are separated by 104 nucleotides MPMX19_05821 and MPMX19_05822 are separated by 645 nucleotides MPMX19_05822 and MPMX19_05823 are separated by 34 nucleotides MPMX19_05823 and MPMX19_05824 are separated by 155 nucleotides
MPMX19_05820: MPMX19_05820 - hypothetical protein, at 547,681 to 548,106
_05820
MPMX19_05821: MPMX19_05821 - hypothetical protein, at 548,211 to 548,456
_05821
MPMX19_05822: MPMX19_05822 - Sensor histidine kinase RcsC, at 549,102 to 551,894
_05822
MPMX19_05823: MPMX19_05823 - hypothetical protein, at 551,929 to 552,234
_05823
MPMX19_05824: MPMX19_05824 - hypothetical protein, at 552,390 to 553,403
_05824
Position (kb) 549
550
551
552 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 548.476 kb on + strand at 548.476 kb on + strand at 548.742 kb on + strand at 548.742 kb on + strand at 548.743 kb on - strand at 548.743 kb on - strand at 548.743 kb on - strand at 548.743 kb on - strand at 548.743 kb on - strand at 548.743 kb on - strand at 548.743 kb on - strand at 548.752 kb on + strand at 548.752 kb on + strand at 548.752 kb on + strand at 548.752 kb on + strand at 548.752 kb on + strand at 548.753 kb on - strand at 548.753 kb on - strand at 548.753 kb on - strand at 548.753 kb on - strand at 548.782 kb on + strand at 548.782 kb on + strand at 548.782 kb on + strand at 548.782 kb on + strand at 548.783 kb on - strand at 548.783 kb on - strand at 548.783 kb on - strand at 548.783 kb on - strand at 548.783 kb on - strand at 548.858 kb on - strand at 548.858 kb on - strand at 548.889 kb on + strand at 548.889 kb on + strand at 548.891 kb on + strand at 548.892 kb on - strand at 549.013 kb on + strand at 549.014 kb on - strand at 549.041 kb on + strand at 549.041 kb on + strand at 549.115 kb on + strand at 549.115 kb on + strand at 549.180 kb on + strand at 549.180 kb on + strand at 549.180 kb on + strand at 549.180 kb on + strand at 549.180 kb on + strand at 549.180 kb on + strand at 549.180 kb on + strand at 549.180 kb on + strand at 549.180 kb on + strand at 549.181 kb on - strand at 549.181 kb on - strand at 549.181 kb on - strand at 549.181 kb on - strand at 549.181 kb on - strand at 549.181 kb on - strand at 549.183 kb on + strand at 549.183 kb on + strand at 549.183 kb on + strand at 549.183 kb on + strand at 549.183 kb on + strand at 549.183 kb on + strand at 549.183 kb on + strand at 549.183 kb on + strand at 549.183 kb on + strand at 549.184 kb on - strand at 549.184 kb on - strand at 549.184 kb on - strand at 549.184 kb on - strand at 549.184 kb on - strand at 549.184 kb on - strand at 549.184 kb on - strand at 549.184 kb on - strand at 549.184 kb on - strand at 549.184 kb on - strand at 549.184 kb on - strand at 549.184 kb on - strand at 549.184 kb on - strand at 549.189 kb on + strand at 549.189 kb on + strand at 549.190 kb on - strand at 549.283 kb on + strand at 549.283 kb on + strand at 549.283 kb on + strand at 549.283 kb on + strand at 549.283 kb on + strand at 549.283 kb on + strand at 549.283 kb on + strand at 549.284 kb on - strand at 549.284 kb on - strand at 549.284 kb on - strand at 549.284 kb on - strand at 549.284 kb on - strand at 549.284 kb on - strand at 549.373 kb on - strand at 549.373 kb on - strand at 549.411 kb on + strand, within MPMX19_05822 at 549.411 kb on + strand, within MPMX19_05822 at 549.412 kb on - strand, within MPMX19_05822 at 549.412 kb on - strand, within MPMX19_05822 at 549.555 kb on + strand, within MPMX19_05822 at 549.555 kb on + strand, within MPMX19_05822 at 549.555 kb on + strand, within MPMX19_05822 at 549.555 kb on + strand, within MPMX19_05822 at 549.556 kb on - strand, within MPMX19_05822 at 549.556 kb on - strand, within MPMX19_05822 at 549.657 kb on + strand, within MPMX19_05822 at 549.657 kb on + strand, within MPMX19_05822 at 549.657 kb on + strand, within MPMX19_05822 at 549.657 kb on + strand, within MPMX19_05822 at 549.657 kb on + strand, within MPMX19_05822 at 549.657 kb on + strand, within MPMX19_05822 at 549.657 kb on + strand, within MPMX19_05822 at 549.657 kb on + strand, within MPMX19_05822 at 549.657 kb on + strand, within MPMX19_05822 at 549.657 kb on + strand, within MPMX19_05822 at 549.657 kb on + strand, within MPMX19_05822 at 549.657 kb on + strand, within MPMX19_05822 at 549.657 kb on + strand, within MPMX19_05822 at 549.658 kb on - strand, within MPMX19_05822 at 549.658 kb on - strand, within MPMX19_05822 at 549.658 kb on - strand, within MPMX19_05822 at 549.658 kb on - strand, within MPMX19_05822 at 549.658 kb on - strand, within MPMX19_05822 at 549.658 kb on - strand, within MPMX19_05822 at 549.658 kb on - strand, within MPMX19_05822 at 549.658 kb on - strand, within MPMX19_05822 at 549.699 kb on + strand, within MPMX19_05822 at 549.879 kb on + strand, within MPMX19_05822 at 549.879 kb on + strand, within MPMX19_05822 at 549.879 kb on + strand, within MPMX19_05822 at 549.879 kb on + strand, within MPMX19_05822 at 549.880 kb on - strand, within MPMX19_05822 at 549.880 kb on - strand, within MPMX19_05822 at 549.880 kb on - strand, within MPMX19_05822 at 549.880 kb on - strand, within MPMX19_05822 at 549.880 kb on - strand, within MPMX19_05822 at 549.928 kb on + strand, within MPMX19_05822 at 550.014 kb on + strand, within MPMX19_05822 at 550.014 kb on + strand, within MPMX19_05822 at 550.015 kb on - strand, within MPMX19_05822 at 550.049 kb on - strand, within MPMX19_05822 at 550.305 kb on + strand, within MPMX19_05822 at 550.305 kb on + strand, within MPMX19_05822 at 550.305 kb on + strand, within MPMX19_05822 at 550.305 kb on + strand, within MPMX19_05822 at 550.305 kb on + strand, within MPMX19_05822 at 550.305 kb on + strand, within MPMX19_05822 at 550.306 kb on - strand, within MPMX19_05822 at 550.306 kb on - strand, within MPMX19_05822 at 550.306 kb on - strand, within MPMX19_05822 at 550.306 kb on - strand, within MPMX19_05822 at 550.306 kb on - strand, within MPMX19_05822 at 550.306 kb on - strand, within MPMX19_05822 at 550.519 kb on + strand, within MPMX19_05822 at 550.519 kb on + strand, within MPMX19_05822 at 550.520 kb on - strand, within MPMX19_05822 at 550.581 kb on + strand, within MPMX19_05822 at 550.581 kb on + strand, within MPMX19_05822 at 550.581 kb on + strand, within MPMX19_05822 at 550.581 kb on + strand, within MPMX19_05822 at 550.581 kb on + strand, within MPMX19_05822 at 550.581 kb on + strand, within MPMX19_05822 at 550.581 kb on + strand, within MPMX19_05822 at 550.581 kb on + strand, within MPMX19_05822 at 550.582 kb on - strand, within MPMX19_05822 at 550.582 kb on - strand, within MPMX19_05822 at 550.582 kb on - strand, within MPMX19_05822 at 550.582 kb on - strand, within MPMX19_05822 at 551.820 kb on + strand at 551.820 kb on + strand at 551.820 kb on + strand at 551.821 kb on - strand at 551.821 kb on - strand at 551.821 kb on - strand at 551.821 kb on - strand at 551.821 kb on - strand at 551.907 kb on + strand at 551.908 kb on - strand at 552.114 kb on - strand, within MPMX19_05823 at 552.114 kb on - strand, within MPMX19_05823 at 552.152 kb on + strand, within MPMX19_05823 at 552.197 kb on + strand, within MPMX19_05823 at 552.197 kb on + strand, within MPMX19_05823 at 552.197 kb on + strand, within MPMX19_05823 at 552.197 kb on + strand, within MPMX19_05823 at 552.197 kb on + strand, within MPMX19_05823 at 552.197 kb on + strand, within MPMX19_05823 at 552.197 kb on + strand, within MPMX19_05823 at 552.197 kb on + strand, within MPMX19_05823 at 552.197 kb on + strand, within MPMX19_05823 at 552.197 kb on + strand, within MPMX19_05823 at 552.197 kb on + strand, within MPMX19_05823 at 552.197 kb on + strand, within MPMX19_05823 at 552.197 kb on + strand, within MPMX19_05823 at 552.198 kb on - strand, within MPMX19_05823 at 552.198 kb on - strand, within MPMX19_05823 at 552.198 kb on - strand, within MPMX19_05823 at 552.198 kb on - strand, within MPMX19_05823 at 552.198 kb on - strand, within MPMX19_05823 at 552.198 kb on - strand, within MPMX19_05823 at 552.198 kb on - strand, within MPMX19_05823 at 552.198 kb on - strand, within MPMX19_05823 at 552.198 kb on - strand, within MPMX19_05823 at 552.198 kb on - strand, within MPMX19_05823 at 552.198 kb on - strand, within MPMX19_05823 at 552.198 kb on - strand, within MPMX19_05823 at 552.316 kb on - strand at 552.316 kb on - strand at 552.421 kb on + strand at 552.421 kb on + strand at 552.421 kb on + strand at 552.421 kb on + strand at 552.421 kb on + strand at 552.421 kb on + strand at 552.421 kb on + strand at 552.422 kb on - strand at 552.422 kb on - strand at 552.422 kb on - strand at 552.422 kb on - strand at 552.637 kb on + strand, within MPMX19_05824 at 552.638 kb on - strand, within MPMX19_05824 at 552.844 kb on + strand, within MPMX19_05824 at 552.844 kb on + strand, within MPMX19_05824 at 552.844 kb on + strand, within MPMX19_05824 at 552.845 kb on - strand, within MPMX19_05824 at 552.845 kb on - strand, within MPMX19_05824 at 552.845 kb on - strand, within MPMX19_05824 at 552.845 kb on - strand, within MPMX19_05824 at 552.845 kb on - strand, within MPMX19_05824 at 552.845 kb on - strand, within MPMX19_05824 at 552.845 kb on - strand, within MPMX19_05824 at 552.845 kb on - strand, within MPMX19_05824
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 548,476 + +0.7 548,476 + +1.4 548,742 + -0.0 548,742 + -1.0 548,743 - -1.9 548,743 - -0.0 548,743 - -1.2 548,743 - +0.5 548,743 - +0.1 548,743 - -0.4 548,743 - -1.3 548,752 + -1.8 548,752 + -1.8 548,752 + +0.3 548,752 + -0.0 548,752 + -1.0 548,753 - -0.1 548,753 - -0.3 548,753 - -2.5 548,753 - -1.0 548,782 + +1.4 548,782 + -0.8 548,782 + +0.1 548,782 + +0.5 548,783 - +0.7 548,783 - -0.0 548,783 - -0.0 548,783 - -0.3 548,783 - -1.6 548,858 - +1.1 548,858 - -0.4 548,889 + -0.7 548,889 + +0.3 548,891 + +0.4 548,892 - +0.2 549,013 + -1.4 549,014 - -0.7 549,041 + -1.1 549,041 + -0.3 549,115 + +0.4 549,115 + -1.0 549,180 + -2.4 549,180 + +0.2 549,180 + -1.6 549,180 + -1.3 549,180 + -0.5 549,180 + -0.3 549,180 + -0.1 549,180 + -0.2 549,180 + -0.4 549,181 - -0.8 549,181 - -0.8 549,181 - -0.6 549,181 - -0.2 549,181 - +0.1 549,181 - -0.5 549,183 + -0.7 549,183 + -0.3 549,183 + -0.5 549,183 + -0.7 549,183 + +0.4 549,183 + -1.8 549,183 + -0.4 549,183 + +0.1 549,183 + -1.2 549,184 - -0.6 549,184 - -2.3 549,184 - -2.3 549,184 - +1.5 549,184 - -1.1 549,184 - +0.1 549,184 - +0.1 549,184 - +1.1 549,184 - -0.1 549,184 - -0.7 549,184 - -0.4 549,184 - +1.4 549,184 - +0.1 549,189 + -0.9 549,189 + -1.8 549,190 - -0.6 549,283 + +0.1 549,283 + +0.7 549,283 + +1.2 549,283 + -1.0 549,283 + -0.8 549,283 + +0.0 549,283 + -0.3 549,284 - -2.5 549,284 - +0.4 549,284 - +0.5 549,284 - -0.3 549,284 - +0.2 549,284 - -1.3 549,373 - -0.4 549,373 - +0.4 549,411 + MPMX19_05822 0.11 +0.3 549,411 + MPMX19_05822 0.11 -2.8 549,412 - MPMX19_05822 0.11 -0.7 549,412 - MPMX19_05822 0.11 -0.4 549,555 + MPMX19_05822 0.16 +0.1 549,555 + MPMX19_05822 0.16 -0.3 549,555 + MPMX19_05822 0.16 -0.8 549,555 + MPMX19_05822 0.16 +0.5 549,556 - MPMX19_05822 0.16 +0.3 549,556 - MPMX19_05822 0.16 -0.7 549,657 + MPMX19_05822 0.20 +0.4 549,657 + MPMX19_05822 0.20 -1.0 549,657 + MPMX19_05822 0.20 -0.2 549,657 + MPMX19_05822 0.20 +0.5 549,657 + MPMX19_05822 0.20 -0.0 549,657 + MPMX19_05822 0.20 +0.1 549,657 + MPMX19_05822 0.20 -0.3 549,657 + MPMX19_05822 0.20 -1.6 549,657 + MPMX19_05822 0.20 -1.3 549,657 + MPMX19_05822 0.20 -0.4 549,657 + MPMX19_05822 0.20 -0.8 549,657 + MPMX19_05822 0.20 -0.6 549,657 + MPMX19_05822 0.20 -1.0 549,658 - MPMX19_05822 0.20 -2.7 549,658 - MPMX19_05822 0.20 -1.5 549,658 - MPMX19_05822 0.20 -0.3 549,658 - MPMX19_05822 0.20 +0.0 549,658 - MPMX19_05822 0.20 -1.3 549,658 - MPMX19_05822 0.20 -0.5 549,658 - MPMX19_05822 0.20 +0.4 549,658 - MPMX19_05822 0.20 -0.9 549,699 + MPMX19_05822 0.21 -0.6 549,879 + MPMX19_05822 0.28 -1.8 549,879 + MPMX19_05822 0.28 -0.4 549,879 + MPMX19_05822 0.28 +0.7 549,879 + MPMX19_05822 0.28 -1.0 549,880 - MPMX19_05822 0.28 -0.8 549,880 - MPMX19_05822 0.28 -1.0 549,880 - MPMX19_05822 0.28 +0.2 549,880 - MPMX19_05822 0.28 -0.5 549,880 - MPMX19_05822 0.28 -1.0 549,928 + MPMX19_05822 0.30 +0.5 550,014 + MPMX19_05822 0.33 +0.8 550,014 + MPMX19_05822 0.33 -2.5 550,015 - MPMX19_05822 0.33 +0.7 550,049 - MPMX19_05822 0.34 -1.8 550,305 + MPMX19_05822 0.43 -1.3 550,305 + MPMX19_05822 0.43 -0.8 550,305 + MPMX19_05822 0.43 -0.4 550,305 + MPMX19_05822 0.43 -0.8 550,305 + MPMX19_05822 0.43 -1.1 550,305 + MPMX19_05822 0.43 -1.0 550,306 - MPMX19_05822 0.43 -1.0 550,306 - MPMX19_05822 0.43 +0.8 550,306 - MPMX19_05822 0.43 -0.8 550,306 - MPMX19_05822 0.43 -0.8 550,306 - MPMX19_05822 0.43 -0.5 550,306 - MPMX19_05822 0.43 +0.3 550,519 + MPMX19_05822 0.51 +0.2 550,519 + MPMX19_05822 0.51 -1.3 550,520 - MPMX19_05822 0.51 -0.5 550,581 + MPMX19_05822 0.53 -0.6 550,581 + MPMX19_05822 0.53 -0.0 550,581 + MPMX19_05822 0.53 -0.0 550,581 + MPMX19_05822 0.53 +1.2 550,581 + MPMX19_05822 0.53 +0.8 550,581 + MPMX19_05822 0.53 -1.6 550,581 + MPMX19_05822 0.53 -0.9 550,581 + MPMX19_05822 0.53 -0.9 550,582 - MPMX19_05822 0.53 -1.0 550,582 - MPMX19_05822 0.53 -0.6 550,582 - MPMX19_05822 0.53 +2.0 550,582 - MPMX19_05822 0.53 -0.1 551,820 + -0.3 551,820 + -0.6 551,820 + -2.0 551,821 - -0.2 551,821 - -1.1 551,821 - -0.5 551,821 - -0.3 551,821 - -0.2 551,907 + +0.1 551,908 - +1.0 552,114 - MPMX19_05823 0.60 -0.6 552,114 - MPMX19_05823 0.60 -1.6 552,152 + MPMX19_05823 0.73 -1.9 552,197 + MPMX19_05823 0.88 -0.8 552,197 + MPMX19_05823 0.88 +0.6 552,197 + MPMX19_05823 0.88 +0.8 552,197 + MPMX19_05823 0.88 +0.4 552,197 + MPMX19_05823 0.88 -0.6 552,197 + MPMX19_05823 0.88 +0.8 552,197 + MPMX19_05823 0.88 +0.1 552,197 + MPMX19_05823 0.88 -0.0 552,197 + MPMX19_05823 0.88 +0.3 552,197 + MPMX19_05823 0.88 +0.1 552,197 + MPMX19_05823 0.88 -0.2 552,197 + MPMX19_05823 0.88 +0.3 552,197 + MPMX19_05823 0.88 -0.0 552,198 - MPMX19_05823 0.88 -1.7 552,198 - MPMX19_05823 0.88 -1.0 552,198 - MPMX19_05823 0.88 -0.5 552,198 - MPMX19_05823 0.88 -0.6 552,198 - MPMX19_05823 0.88 -0.2 552,198 - MPMX19_05823 0.88 +0.3 552,198 - MPMX19_05823 0.88 -0.0 552,198 - MPMX19_05823 0.88 -0.8 552,198 - MPMX19_05823 0.88 -0.0 552,198 - MPMX19_05823 0.88 +0.6 552,198 - MPMX19_05823 0.88 -0.5 552,198 - MPMX19_05823 0.88 -0.2 552,316 - +1.2 552,316 - -1.6 552,421 + -1.3 552,421 + -2.2 552,421 + -1.3 552,421 + -0.3 552,421 + -1.6 552,421 + +0.2 552,421 + -1.6 552,422 - -3.1 552,422 - -1.5 552,422 - -0.0 552,422 - -0.8 552,637 + MPMX19_05824 0.24 +0.7 552,638 - MPMX19_05824 0.24 +0.2 552,844 + MPMX19_05824 0.45 +0.4 552,844 + MPMX19_05824 0.45 -1.3 552,844 + MPMX19_05824 0.45 -1.0 552,845 - MPMX19_05824 0.45 -0.3 552,845 - MPMX19_05824 0.45 -0.5 552,845 - MPMX19_05824 0.45 +0.5 552,845 - MPMX19_05824 0.45 +0.8 552,845 - MPMX19_05824 0.45 -0.9 552,845 - MPMX19_05824 0.45 +1.3 552,845 - MPMX19_05824 0.45 +0.5 552,845 - MPMX19_05824 0.45 -1.3
Or see this region's nucleotide sequence