Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05775 and MPMX19_05776 overlap by 4 nucleotides MPMX19_05776 and MPMX19_05777 overlap by 1 nucleotides MPMX19_05777 and MPMX19_05778 overlap by 8 nucleotides MPMX19_05778 and MPMX19_05779 overlap by 8 nucleotides
MPMX19_05775: MPMX19_05775 - N-succinylglutamate 5-semialdehyde dehydrogenase, at 497,282 to 498,973
_05775
MPMX19_05776: MPMX19_05776 - 1,2-epoxyphenylacetyl-CoA isomerase, at 498,970 to 499,761
_05776
MPMX19_05777: MPMX19_05777 - 3-hydroxyadipyl-CoA dehydrogenase, at 499,761 to 501,278
_05777
MPMX19_05778: MPMX19_05778 - Acyl-coenzyme A thioesterase PaaI, at 501,271 to 501,729
_05778
MPMX19_05779: MPMX19_05779 - Beta-ketoadipyl-CoA thiolase, at 501,722 to 502,930
_05779
Position (kb) 499
500
501
502 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 499.234 kb on + strand, within MPMX19_05776 at 499.234 kb on + strand, within MPMX19_05776 at 499.234 kb on + strand, within MPMX19_05776 at 499.234 kb on + strand, within MPMX19_05776 at 499.234 kb on + strand, within MPMX19_05776 at 499.234 kb on + strand, within MPMX19_05776 at 499.234 kb on + strand, within MPMX19_05776 at 499.234 kb on + strand, within MPMX19_05776 at 499.234 kb on + strand, within MPMX19_05776 at 499.234 kb on + strand, within MPMX19_05776 at 499.234 kb on + strand, within MPMX19_05776 at 499.234 kb on + strand, within MPMX19_05776 at 499.234 kb on + strand, within MPMX19_05776 at 499.235 kb on - strand, within MPMX19_05776 at 499.235 kb on - strand, within MPMX19_05776 at 499.235 kb on - strand, within MPMX19_05776 at 499.235 kb on - strand, within MPMX19_05776 at 499.235 kb on - strand, within MPMX19_05776 at 499.235 kb on - strand, within MPMX19_05776 at 499.235 kb on - strand, within MPMX19_05776 at 499.235 kb on - strand, within MPMX19_05776 at 499.235 kb on - strand, within MPMX19_05776 at 499.235 kb on - strand, within MPMX19_05776 at 499.235 kb on - strand, within MPMX19_05776 at 499.235 kb on - strand, within MPMX19_05776 at 499.235 kb on - strand, within MPMX19_05776 at 499.235 kb on - strand, within MPMX19_05776 at 499.235 kb on - strand, within MPMX19_05776 at 499.235 kb on - strand, within MPMX19_05776 at 499.605 kb on + strand, within MPMX19_05776 at 499.605 kb on + strand, within MPMX19_05776 at 499.606 kb on - strand, within MPMX19_05776 at 499.702 kb on + strand at 500.361 kb on + strand, within MPMX19_05777 at 500.361 kb on + strand, within MPMX19_05777 at 500.361 kb on + strand, within MPMX19_05777 at 500.361 kb on + strand, within MPMX19_05777 at 500.362 kb on - strand, within MPMX19_05777 at 500.362 kb on - strand, within MPMX19_05777 at 500.523 kb on + strand, within MPMX19_05777 at 500.523 kb on + strand, within MPMX19_05777 at 500.524 kb on - strand, within MPMX19_05777 at 500.524 kb on - strand, within MPMX19_05777 at 500.524 kb on - strand, within MPMX19_05777 at 500.557 kb on + strand, within MPMX19_05777 at 500.557 kb on + strand, within MPMX19_05777 at 500.557 kb on + strand, within MPMX19_05777 at 500.557 kb on + strand, within MPMX19_05777 at 500.557 kb on + strand, within MPMX19_05777 at 500.557 kb on + strand, within MPMX19_05777 at 500.557 kb on + strand, within MPMX19_05777 at 500.557 kb on + strand, within MPMX19_05777 at 500.557 kb on + strand, within MPMX19_05777 at 500.558 kb on - strand, within MPMX19_05777 at 500.558 kb on - strand, within MPMX19_05777 at 500.558 kb on - strand, within MPMX19_05777 at 500.558 kb on - strand, within MPMX19_05777 at 500.558 kb on - strand, within MPMX19_05777 at 500.558 kb on - strand, within MPMX19_05777 at 500.613 kb on + strand, within MPMX19_05777 at 500.613 kb on + strand, within MPMX19_05777 at 500.613 kb on + strand, within MPMX19_05777 at 500.613 kb on + strand, within MPMX19_05777 at 500.613 kb on + strand, within MPMX19_05777 at 500.613 kb on + strand, within MPMX19_05777 at 500.613 kb on + strand, within MPMX19_05777 at 500.613 kb on + strand, within MPMX19_05777 at 500.614 kb on - strand, within MPMX19_05777 at 500.614 kb on - strand, within MPMX19_05777 at 500.614 kb on - strand, within MPMX19_05777 at 500.614 kb on - strand, within MPMX19_05777 at 500.614 kb on - strand, within MPMX19_05777 at 500.795 kb on + strand, within MPMX19_05777 at 500.886 kb on + strand, within MPMX19_05777 at 500.886 kb on + strand, within MPMX19_05777 at 500.887 kb on - strand, within MPMX19_05777 at 500.887 kb on - strand, within MPMX19_05777 at 500.887 kb on - strand, within MPMX19_05777 at 501.123 kb on + strand, within MPMX19_05777 at 501.124 kb on - strand, within MPMX19_05777 at 501.124 kb on - strand, within MPMX19_05777 at 501.204 kb on + strand at 501.204 kb on + strand at 501.204 kb on + strand at 501.204 kb on + strand at 501.204 kb on + strand at 501.205 kb on - strand at 501.205 kb on - strand at 501.205 kb on - strand at 501.205 kb on - strand at 501.328 kb on + strand, within MPMX19_05778 at 501.328 kb on + strand, within MPMX19_05778 at 501.328 kb on + strand, within MPMX19_05778 at 501.328 kb on + strand, within MPMX19_05778 at 501.328 kb on + strand, within MPMX19_05778 at 501.328 kb on + strand, within MPMX19_05778 at 501.328 kb on + strand, within MPMX19_05778 at 501.328 kb on + strand, within MPMX19_05778 at 501.328 kb on + strand, within MPMX19_05778 at 501.329 kb on - strand, within MPMX19_05778 at 501.329 kb on - strand, within MPMX19_05778 at 501.329 kb on - strand, within MPMX19_05778 at 501.329 kb on - strand, within MPMX19_05778 at 501.329 kb on - strand, within MPMX19_05778 at 501.329 kb on - strand, within MPMX19_05778 at 501.329 kb on - strand, within MPMX19_05778 at 501.329 kb on - strand, within MPMX19_05778 at 501.329 kb on - strand, within MPMX19_05778 at 501.329 kb on - strand, within MPMX19_05778 at 501.329 kb on - strand, within MPMX19_05778 at 501.329 kb on - strand, within MPMX19_05778 at 501.329 kb on - strand, within MPMX19_05778 at 501.329 kb on - strand, within MPMX19_05778 at 501.329 kb on - strand, within MPMX19_05778 at 501.329 kb on - strand, within MPMX19_05778 at 501.329 kb on - strand, within MPMX19_05778 at 501.329 kb on - strand, within MPMX19_05778 at 501.329 kb on - strand, within MPMX19_05778 at 501.329 kb on - strand, within MPMX19_05778 at 501.329 kb on - strand, within MPMX19_05778 at 501.329 kb on - strand, within MPMX19_05778 at 501.329 kb on - strand, within MPMX19_05778 at 501.329 kb on - strand, within MPMX19_05778 at 501.487 kb on + strand, within MPMX19_05778 at 501.487 kb on + strand, within MPMX19_05778 at 501.487 kb on + strand, within MPMX19_05778 at 501.487 kb on + strand, within MPMX19_05778 at 501.487 kb on + strand, within MPMX19_05778 at 501.488 kb on - strand, within MPMX19_05778 at 501.488 kb on - strand, within MPMX19_05778 at 501.488 kb on - strand, within MPMX19_05778 at 501.488 kb on - strand, within MPMX19_05778 at 501.556 kb on - strand, within MPMX19_05778 at 501.619 kb on + strand, within MPMX19_05778 at 501.619 kb on + strand, within MPMX19_05778 at 501.619 kb on + strand, within MPMX19_05778 at 501.619 kb on + strand, within MPMX19_05778 at 501.620 kb on - strand, within MPMX19_05778 at 501.620 kb on - strand, within MPMX19_05778 at 501.620 kb on - strand, within MPMX19_05778 at 501.620 kb on - strand, within MPMX19_05778 at 501.620 kb on - strand, within MPMX19_05778 at 501.734 kb on + strand at 501.734 kb on + strand at 501.734 kb on + strand at 501.734 kb on + strand at 501.734 kb on + strand at 501.735 kb on - strand at 501.735 kb on - strand at 501.735 kb on - strand at 501.735 kb on - strand at 501.735 kb on - strand at 501.735 kb on - strand at 501.735 kb on - strand at 501.735 kb on - strand at 501.735 kb on - strand at 501.735 kb on - strand at 501.735 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 499,234 + MPMX19_05776 0.33 -1.5 499,234 + MPMX19_05776 0.33 -0.4 499,234 + MPMX19_05776 0.33 -0.2 499,234 + MPMX19_05776 0.33 -0.8 499,234 + MPMX19_05776 0.33 -0.8 499,234 + MPMX19_05776 0.33 -0.4 499,234 + MPMX19_05776 0.33 -0.5 499,234 + MPMX19_05776 0.33 +0.5 499,234 + MPMX19_05776 0.33 -0.1 499,234 + MPMX19_05776 0.33 +0.4 499,234 + MPMX19_05776 0.33 +1.0 499,234 + MPMX19_05776 0.33 -0.9 499,234 + MPMX19_05776 0.33 -0.9 499,235 - MPMX19_05776 0.33 -2.0 499,235 - MPMX19_05776 0.33 +0.3 499,235 - MPMX19_05776 0.33 -1.5 499,235 - MPMX19_05776 0.33 -0.3 499,235 - MPMX19_05776 0.33 +0.4 499,235 - MPMX19_05776 0.33 +0.5 499,235 - MPMX19_05776 0.33 -1.0 499,235 - MPMX19_05776 0.33 +0.4 499,235 - MPMX19_05776 0.33 -0.8 499,235 - MPMX19_05776 0.33 -0.1 499,235 - MPMX19_05776 0.33 +0.7 499,235 - MPMX19_05776 0.33 +0.5 499,235 - MPMX19_05776 0.33 -2.9 499,235 - MPMX19_05776 0.33 -1.0 499,235 - MPMX19_05776 0.33 -0.2 499,235 - MPMX19_05776 0.33 -1.0 499,605 + MPMX19_05776 0.80 -1.5 499,605 + MPMX19_05776 0.80 -0.3 499,606 - MPMX19_05776 0.80 +0.2 499,702 + -0.9 500,361 + MPMX19_05777 0.40 -0.1 500,361 + MPMX19_05777 0.40 +0.7 500,361 + MPMX19_05777 0.40 +0.0 500,361 + MPMX19_05777 0.40 -2.3 500,362 - MPMX19_05777 0.40 +0.3 500,362 - MPMX19_05777 0.40 -1.4 500,523 + MPMX19_05777 0.50 -0.5 500,523 + MPMX19_05777 0.50 -0.2 500,524 - MPMX19_05777 0.50 -0.8 500,524 - MPMX19_05777 0.50 -2.4 500,524 - MPMX19_05777 0.50 +0.5 500,557 + MPMX19_05777 0.52 -0.5 500,557 + MPMX19_05777 0.52 -0.9 500,557 + MPMX19_05777 0.52 -0.6 500,557 + MPMX19_05777 0.52 +0.1 500,557 + MPMX19_05777 0.52 -0.5 500,557 + MPMX19_05777 0.52 -2.6 500,557 + MPMX19_05777 0.52 -0.0 500,557 + MPMX19_05777 0.52 +0.5 500,557 + MPMX19_05777 0.52 -0.3 500,558 - MPMX19_05777 0.53 +0.1 500,558 - MPMX19_05777 0.53 -1.2 500,558 - MPMX19_05777 0.53 -0.8 500,558 - MPMX19_05777 0.53 -0.0 500,558 - MPMX19_05777 0.53 -0.8 500,558 - MPMX19_05777 0.53 -0.7 500,613 + MPMX19_05777 0.56 +1.5 500,613 + MPMX19_05777 0.56 -1.5 500,613 + MPMX19_05777 0.56 -1.4 500,613 + MPMX19_05777 0.56 +0.5 500,613 + MPMX19_05777 0.56 -1.4 500,613 + MPMX19_05777 0.56 -1.7 500,613 + MPMX19_05777 0.56 -0.5 500,613 + MPMX19_05777 0.56 +1.1 500,614 - MPMX19_05777 0.56 -0.8 500,614 - MPMX19_05777 0.56 +1.4 500,614 - MPMX19_05777 0.56 -1.0 500,614 - MPMX19_05777 0.56 -0.1 500,614 - MPMX19_05777 0.56 -0.0 500,795 + MPMX19_05777 0.68 -1.7 500,886 + MPMX19_05777 0.74 +0.5 500,886 + MPMX19_05777 0.74 -0.1 500,887 - MPMX19_05777 0.74 -1.0 500,887 - MPMX19_05777 0.74 -1.5 500,887 - MPMX19_05777 0.74 +0.2 501,123 + MPMX19_05777 0.90 -1.8 501,124 - MPMX19_05777 0.90 -0.9 501,124 - MPMX19_05777 0.90 -1.3 501,204 + -0.2 501,204 + -1.3 501,204 + +0.3 501,204 + +0.4 501,204 + +0.6 501,205 - -0.8 501,205 - +0.3 501,205 - +0.1 501,205 - -1.1 501,328 + MPMX19_05778 0.12 +0.9 501,328 + MPMX19_05778 0.12 +0.3 501,328 + MPMX19_05778 0.12 -1.5 501,328 + MPMX19_05778 0.12 +0.5 501,328 + MPMX19_05778 0.12 +2.3 501,328 + MPMX19_05778 0.12 +0.2 501,328 + MPMX19_05778 0.12 +1.5 501,328 + MPMX19_05778 0.12 +1.7 501,328 + MPMX19_05778 0.12 -0.0 501,329 - MPMX19_05778 0.13 +0.3 501,329 - MPMX19_05778 0.13 +0.4 501,329 - MPMX19_05778 0.13 -1.8 501,329 - MPMX19_05778 0.13 -1.8 501,329 - MPMX19_05778 0.13 -0.5 501,329 - MPMX19_05778 0.13 -1.1 501,329 - MPMX19_05778 0.13 -1.5 501,329 - MPMX19_05778 0.13 -0.5 501,329 - MPMX19_05778 0.13 -0.2 501,329 - MPMX19_05778 0.13 +1.0 501,329 - MPMX19_05778 0.13 -1.4 501,329 - MPMX19_05778 0.13 -0.5 501,329 - MPMX19_05778 0.13 -0.7 501,329 - MPMX19_05778 0.13 -1.2 501,329 - MPMX19_05778 0.13 +0.5 501,329 - MPMX19_05778 0.13 +1.5 501,329 - MPMX19_05778 0.13 -2.5 501,329 - MPMX19_05778 0.13 -1.2 501,329 - MPMX19_05778 0.13 -0.3 501,329 - MPMX19_05778 0.13 +1.2 501,329 - MPMX19_05778 0.13 -1.3 501,329 - MPMX19_05778 0.13 +0.3 501,329 - MPMX19_05778 0.13 +0.1 501,329 - MPMX19_05778 0.13 -0.8 501,487 + MPMX19_05778 0.47 +1.3 501,487 + MPMX19_05778 0.47 -1.6 501,487 + MPMX19_05778 0.47 -0.2 501,487 + MPMX19_05778 0.47 -1.0 501,487 + MPMX19_05778 0.47 -0.3 501,488 - MPMX19_05778 0.47 -0.2 501,488 - MPMX19_05778 0.47 -0.9 501,488 - MPMX19_05778 0.47 +0.3 501,488 - MPMX19_05778 0.47 -0.7 501,556 - MPMX19_05778 0.62 -2.3 501,619 + MPMX19_05778 0.76 -1.7 501,619 + MPMX19_05778 0.76 +0.5 501,619 + MPMX19_05778 0.76 -0.6 501,619 + MPMX19_05778 0.76 +0.5 501,620 - MPMX19_05778 0.76 -0.8 501,620 - MPMX19_05778 0.76 +0.2 501,620 - MPMX19_05778 0.76 +0.2 501,620 - MPMX19_05778 0.76 +0.5 501,620 - MPMX19_05778 0.76 -2.2 501,734 + -1.2 501,734 + +0.3 501,734 + -0.6 501,734 + +0.1 501,734 + +0.5 501,735 - -1.7 501,735 - +0.6 501,735 - +0.1 501,735 - -0.8 501,735 - +1.0 501,735 - +0.5 501,735 - +0.9 501,735 - +0.1 501,735 - +0.3 501,735 - +0.5 501,735 - +0.1
Or see this region's nucleotide sequence