Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05676 and MPMX19_05677 are separated by 130 nucleotides MPMX19_05677 and MPMX19_05678 are separated by 59 nucleotides MPMX19_05678 and MPMX19_05679 overlap by 4 nucleotides
MPMX19_05676: MPMX19_05676 - hypothetical protein, at 395,366 to 395,596
_05676
MPMX19_05677: MPMX19_05677 - hypothetical protein, at 395,727 to 396,317
_05677
MPMX19_05678: MPMX19_05678 - hypothetical protein, at 396,377 to 396,811
_05678
MPMX19_05679: MPMX19_05679 - Flagellum-specific ATP synthase, at 396,808 to 398,145
_05679
Position (kb) 396
397 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 395.399 kb on + strand, within MPMX19_05676 at 395.414 kb on + strand, within MPMX19_05676 at 395.414 kb on + strand, within MPMX19_05676 at 395.414 kb on + strand, within MPMX19_05676 at 395.414 kb on + strand, within MPMX19_05676 at 395.414 kb on + strand, within MPMX19_05676 at 395.414 kb on + strand, within MPMX19_05676 at 395.414 kb on + strand, within MPMX19_05676 at 395.414 kb on + strand, within MPMX19_05676 at 395.414 kb on + strand, within MPMX19_05676 at 395.414 kb on + strand, within MPMX19_05676 at 395.414 kb on + strand, within MPMX19_05676 at 395.414 kb on + strand, within MPMX19_05676 at 395.414 kb on + strand, within MPMX19_05676 at 395.414 kb on + strand, within MPMX19_05676 at 395.414 kb on + strand, within MPMX19_05676 at 395.414 kb on + strand, within MPMX19_05676 at 395.414 kb on + strand, within MPMX19_05676 at 395.414 kb on + strand, within MPMX19_05676 at 395.414 kb on + strand, within MPMX19_05676 at 395.414 kb on + strand, within MPMX19_05676 at 395.414 kb on + strand, within MPMX19_05676 at 395.414 kb on + strand, within MPMX19_05676 at 395.414 kb on + strand, within MPMX19_05676 at 395.414 kb on + strand, within MPMX19_05676 at 395.414 kb on + strand, within MPMX19_05676 at 395.414 kb on + strand, within MPMX19_05676 at 395.414 kb on + strand, within MPMX19_05676 at 395.414 kb on + strand, within MPMX19_05676 at 395.414 kb on + strand, within MPMX19_05676 at 395.414 kb on + strand, within MPMX19_05676 at 395.414 kb on + strand, within MPMX19_05676 at 395.414 kb on + strand, within MPMX19_05676 at 395.414 kb on + strand, within MPMX19_05676 at 395.414 kb on + strand, within MPMX19_05676 at 395.414 kb on + strand, within MPMX19_05676 at 395.414 kb on + strand, within MPMX19_05676 at 395.414 kb on + strand, within MPMX19_05676 at 395.414 kb on + strand, within MPMX19_05676 at 395.414 kb on + strand, within MPMX19_05676 at 395.415 kb on - strand, within MPMX19_05676 at 395.415 kb on - strand, within MPMX19_05676 at 395.415 kb on - strand, within MPMX19_05676 at 395.415 kb on - strand, within MPMX19_05676 at 395.415 kb on - strand, within MPMX19_05676 at 395.415 kb on - strand, within MPMX19_05676 at 395.415 kb on - strand, within MPMX19_05676 at 395.415 kb on - strand, within MPMX19_05676 at 395.415 kb on - strand, within MPMX19_05676 at 395.415 kb on - strand, within MPMX19_05676 at 395.415 kb on - strand, within MPMX19_05676 at 395.415 kb on - strand, within MPMX19_05676 at 395.415 kb on - strand, within MPMX19_05676 at 395.415 kb on - strand, within MPMX19_05676 at 395.415 kb on - strand, within MPMX19_05676 at 395.415 kb on - strand, within MPMX19_05676 at 395.415 kb on - strand, within MPMX19_05676 at 395.415 kb on - strand, within MPMX19_05676 at 395.415 kb on - strand, within MPMX19_05676 at 395.415 kb on - strand, within MPMX19_05676 at 395.415 kb on - strand, within MPMX19_05676 at 395.415 kb on - strand, within MPMX19_05676 at 395.415 kb on - strand, within MPMX19_05676 at 395.415 kb on - strand, within MPMX19_05676 at 395.415 kb on - strand, within MPMX19_05676 at 395.415 kb on - strand, within MPMX19_05676 at 395.415 kb on - strand, within MPMX19_05676 at 395.415 kb on - strand, within MPMX19_05676 at 395.415 kb on - strand, within MPMX19_05676 at 395.415 kb on - strand, within MPMX19_05676 at 395.415 kb on - strand, within MPMX19_05676 at 395.415 kb on - strand, within MPMX19_05676 at 395.415 kb on - strand, within MPMX19_05676 at 395.415 kb on - strand, within MPMX19_05676 at 395.415 kb on - strand, within MPMX19_05676 at 395.415 kb on - strand, within MPMX19_05676 at 395.415 kb on - strand, within MPMX19_05676 at 395.601 kb on + strand at 395.630 kb on + strand at 395.630 kb on + strand at 395.631 kb on - strand at 395.631 kb on - strand at 395.896 kb on - strand, within MPMX19_05677 at 395.896 kb on - strand, within MPMX19_05677 at 395.896 kb on - strand, within MPMX19_05677 at 395.925 kb on + strand, within MPMX19_05677 at 395.925 kb on + strand, within MPMX19_05677 at 395.925 kb on + strand, within MPMX19_05677 at 395.926 kb on - strand, within MPMX19_05677 at 395.926 kb on - strand, within MPMX19_05677 at 395.926 kb on - strand, within MPMX19_05677 at 395.926 kb on - strand, within MPMX19_05677 at 395.991 kb on + strand, within MPMX19_05677 at 396.102 kb on + strand, within MPMX19_05677 at 396.103 kb on - strand, within MPMX19_05677 at 396.103 kb on - strand, within MPMX19_05677 at 396.265 kb on + strand at 396.265 kb on + strand at 396.266 kb on - strand at 396.266 kb on - strand at 396.266 kb on - strand at 396.266 kb on - strand at 396.273 kb on + strand at 396.273 kb on + strand at 396.273 kb on + strand at 396.273 kb on + strand at 396.273 kb on + strand at 396.274 kb on - strand at 396.274 kb on - strand at 396.274 kb on - strand at 396.274 kb on - strand at 396.274 kb on - strand at 396.274 kb on - strand at 396.274 kb on - strand at 396.274 kb on - strand at 396.274 kb on - strand at 396.274 kb on - strand at 396.274 kb on - strand at 396.274 kb on - strand at 396.274 kb on - strand at 396.274 kb on - strand at 396.371 kb on + strand at 396.372 kb on - strand at 396.372 kb on - strand at 396.372 kb on - strand at 396.372 kb on - strand at 396.372 kb on - strand at 396.510 kb on + strand, within MPMX19_05678 at 396.510 kb on + strand, within MPMX19_05678 at 396.511 kb on - strand, within MPMX19_05678 at 396.636 kb on + strand, within MPMX19_05678 at 396.636 kb on + strand, within MPMX19_05678 at 396.636 kb on + strand, within MPMX19_05678 at 396.636 kb on + strand, within MPMX19_05678 at 396.636 kb on + strand, within MPMX19_05678 at 396.636 kb on + strand, within MPMX19_05678 at 396.636 kb on + strand, within MPMX19_05678 at 396.637 kb on - strand, within MPMX19_05678 at 396.637 kb on - strand, within MPMX19_05678 at 396.637 kb on - strand, within MPMX19_05678 at 396.637 kb on - strand, within MPMX19_05678 at 396.637 kb on - strand, within MPMX19_05678 at 396.637 kb on - strand, within MPMX19_05678 at 396.637 kb on - strand, within MPMX19_05678 at 396.736 kb on + strand, within MPMX19_05678 at 396.736 kb on + strand, within MPMX19_05678 at 396.736 kb on + strand, within MPMX19_05678 at 396.736 kb on + strand, within MPMX19_05678 at 396.736 kb on + strand, within MPMX19_05678 at 396.737 kb on - strand, within MPMX19_05678 at 396.737 kb on - strand, within MPMX19_05678 at 396.737 kb on - strand, within MPMX19_05678 at 396.737 kb on - strand, within MPMX19_05678 at 396.737 kb on - strand, within MPMX19_05678 at 396.737 kb on - strand, within MPMX19_05678 at 396.737 kb on - strand, within MPMX19_05678 at 396.737 kb on - strand, within MPMX19_05678 at 396.851 kb on + strand at 396.851 kb on + strand at 396.851 kb on + strand at 396.851 kb on + strand at 396.851 kb on + strand at 396.851 kb on + strand at 396.851 kb on + strand at 396.851 kb on + strand at 396.851 kb on + strand at 396.851 kb on + strand at 396.851 kb on + strand at 396.851 kb on + strand at 396.851 kb on + strand at 396.851 kb on + strand at 396.851 kb on + strand at 396.851 kb on + strand at 396.852 kb on - strand at 396.852 kb on - strand at 396.852 kb on - strand at 396.852 kb on - strand at 396.852 kb on - strand at 396.852 kb on - strand at 396.852 kb on - strand at 396.852 kb on - strand at 396.852 kb on - strand at 396.852 kb on - strand at 396.852 kb on - strand at 396.852 kb on - strand at 396.852 kb on - strand at 396.852 kb on - strand at 396.852 kb on - strand at 396.959 kb on + strand, within MPMX19_05679 at 396.960 kb on - strand, within MPMX19_05679 at 396.960 kb on - strand, within MPMX19_05679 at 396.995 kb on + strand, within MPMX19_05679 at 396.995 kb on + strand, within MPMX19_05679 at 396.995 kb on + strand, within MPMX19_05679 at 396.995 kb on + strand, within MPMX19_05679 at 396.996 kb on - strand, within MPMX19_05679 at 396.996 kb on - strand, within MPMX19_05679 at 396.996 kb on - strand, within MPMX19_05679 at 396.996 kb on - strand, within MPMX19_05679 at 396.996 kb on - strand, within MPMX19_05679 at 396.996 kb on - strand, within MPMX19_05679 at 397.298 kb on + strand, within MPMX19_05679 at 397.298 kb on + strand, within MPMX19_05679 at 397.436 kb on + strand, within MPMX19_05679 at 397.436 kb on + strand, within MPMX19_05679 at 397.436 kb on + strand, within MPMX19_05679 at 397.436 kb on + strand, within MPMX19_05679 at 397.436 kb on + strand, within MPMX19_05679 at 397.436 kb on + strand, within MPMX19_05679 at 397.436 kb on + strand, within MPMX19_05679 at 397.436 kb on + strand, within MPMX19_05679 at 397.436 kb on + strand, within MPMX19_05679 at 397.436 kb on + strand, within MPMX19_05679 at 397.436 kb on + strand, within MPMX19_05679 at 397.436 kb on + strand, within MPMX19_05679 at 397.436 kb on + strand, within MPMX19_05679 at 397.436 kb on + strand, within MPMX19_05679 at 397.436 kb on + strand, within MPMX19_05679 at 397.436 kb on + strand, within MPMX19_05679 at 397.436 kb on + strand, within MPMX19_05679 at 397.436 kb on + strand, within MPMX19_05679 at 397.436 kb on + strand, within MPMX19_05679 at 397.436 kb on + strand, within MPMX19_05679 at 397.436 kb on + strand, within MPMX19_05679 at 397.436 kb on + strand, within MPMX19_05679 at 397.436 kb on + strand, within MPMX19_05679 at 397.437 kb on - strand, within MPMX19_05679 at 397.437 kb on - strand, within MPMX19_05679 at 397.437 kb on - strand, within MPMX19_05679 at 397.437 kb on - strand, within MPMX19_05679 at 397.437 kb on - strand, within MPMX19_05679 at 397.437 kb on - strand, within MPMX19_05679 at 397.437 kb on - strand, within MPMX19_05679 at 397.437 kb on - strand, within MPMX19_05679 at 397.437 kb on - strand, within MPMX19_05679 at 397.437 kb on - strand, within MPMX19_05679 at 397.437 kb on - strand, within MPMX19_05679 at 397.437 kb on - strand, within MPMX19_05679 at 397.437 kb on - strand, within MPMX19_05679 at 397.437 kb on - strand, within MPMX19_05679 at 397.437 kb on - strand, within MPMX19_05679
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 395,399 + MPMX19_05676 0.14 -0.3 395,414 + MPMX19_05676 0.21 -0.7 395,414 + MPMX19_05676 0.21 -0.9 395,414 + MPMX19_05676 0.21 +0.2 395,414 + MPMX19_05676 0.21 -0.3 395,414 + MPMX19_05676 0.21 +0.1 395,414 + MPMX19_05676 0.21 +1.7 395,414 + MPMX19_05676 0.21 -2.7 395,414 + MPMX19_05676 0.21 -1.0 395,414 + MPMX19_05676 0.21 -1.6 395,414 + MPMX19_05676 0.21 -1.3 395,414 + MPMX19_05676 0.21 -1.0 395,414 + MPMX19_05676 0.21 -0.3 395,414 + MPMX19_05676 0.21 -0.6 395,414 + MPMX19_05676 0.21 +0.4 395,414 + MPMX19_05676 0.21 -2.0 395,414 + MPMX19_05676 0.21 -0.1 395,414 + MPMX19_05676 0.21 +0.4 395,414 + MPMX19_05676 0.21 +1.7 395,414 + MPMX19_05676 0.21 -1.5 395,414 + MPMX19_05676 0.21 -1.7 395,414 + MPMX19_05676 0.21 +0.3 395,414 + MPMX19_05676 0.21 +0.3 395,414 + MPMX19_05676 0.21 +0.2 395,414 + MPMX19_05676 0.21 -0.5 395,414 + MPMX19_05676 0.21 +0.3 395,414 + MPMX19_05676 0.21 -1.2 395,414 + MPMX19_05676 0.21 -0.7 395,414 + MPMX19_05676 0.21 -1.2 395,414 + MPMX19_05676 0.21 -1.0 395,414 + MPMX19_05676 0.21 -0.2 395,414 + MPMX19_05676 0.21 -0.3 395,414 + MPMX19_05676 0.21 +0.2 395,414 + MPMX19_05676 0.21 -0.3 395,414 + MPMX19_05676 0.21 -0.2 395,414 + MPMX19_05676 0.21 -1.0 395,414 + MPMX19_05676 0.21 -1.6 395,414 + MPMX19_05676 0.21 -3.0 395,414 + MPMX19_05676 0.21 -1.9 395,414 + MPMX19_05676 0.21 -3.1 395,415 - MPMX19_05676 0.21 -0.0 395,415 - MPMX19_05676 0.21 -2.3 395,415 - MPMX19_05676 0.21 -0.3 395,415 - MPMX19_05676 0.21 +1.5 395,415 - MPMX19_05676 0.21 -0.7 395,415 - MPMX19_05676 0.21 -0.0 395,415 - MPMX19_05676 0.21 -1.3 395,415 - MPMX19_05676 0.21 -1.6 395,415 - MPMX19_05676 0.21 -0.8 395,415 - MPMX19_05676 0.21 -0.6 395,415 - MPMX19_05676 0.21 +0.5 395,415 - MPMX19_05676 0.21 +0.3 395,415 - MPMX19_05676 0.21 -0.9 395,415 - MPMX19_05676 0.21 -1.0 395,415 - MPMX19_05676 0.21 +1.5 395,415 - MPMX19_05676 0.21 +0.2 395,415 - MPMX19_05676 0.21 +0.0 395,415 - MPMX19_05676 0.21 -1.6 395,415 - MPMX19_05676 0.21 +0.3 395,415 - MPMX19_05676 0.21 -0.5 395,415 - MPMX19_05676 0.21 -1.0 395,415 - MPMX19_05676 0.21 +0.7 395,415 - MPMX19_05676 0.21 -0.6 395,415 - MPMX19_05676 0.21 +0.1 395,415 - MPMX19_05676 0.21 -0.4 395,415 - MPMX19_05676 0.21 -1.1 395,415 - MPMX19_05676 0.21 -1.3 395,415 - MPMX19_05676 0.21 -1.0 395,415 - MPMX19_05676 0.21 -0.0 395,415 - MPMX19_05676 0.21 -0.5 395,415 - MPMX19_05676 0.21 -0.3 395,415 - MPMX19_05676 0.21 +0.1 395,415 - MPMX19_05676 0.21 -1.0 395,415 - MPMX19_05676 0.21 -0.5 395,415 - MPMX19_05676 0.21 -1.3 395,415 - MPMX19_05676 0.21 -0.3 395,415 - MPMX19_05676 0.21 -3.5 395,601 + +0.9 395,630 + -1.1 395,630 + +0.5 395,631 - -0.7 395,631 - -1.7 395,896 - MPMX19_05677 0.29 -1.0 395,896 - MPMX19_05677 0.29 +0.9 395,896 - MPMX19_05677 0.29 +0.4 395,925 + MPMX19_05677 0.34 -2.0 395,925 + MPMX19_05677 0.34 -0.6 395,925 + MPMX19_05677 0.34 -0.7 395,926 - MPMX19_05677 0.34 -0.2 395,926 - MPMX19_05677 0.34 -0.5 395,926 - MPMX19_05677 0.34 -0.8 395,926 - MPMX19_05677 0.34 -0.9 395,991 + MPMX19_05677 0.45 -1.6 396,102 + MPMX19_05677 0.63 -0.3 396,103 - MPMX19_05677 0.64 -0.5 396,103 - MPMX19_05677 0.64 -0.6 396,265 + +0.5 396,265 + -0.6 396,266 - -0.2 396,266 - +1.3 396,266 - -0.0 396,266 - -2.7 396,273 + +0.5 396,273 + -0.7 396,273 + -0.8 396,273 + -1.7 396,273 + -2.3 396,274 - -1.0 396,274 - -1.2 396,274 - -0.9 396,274 - +1.0 396,274 - -0.2 396,274 - +1.0 396,274 - -0.0 396,274 - +0.8 396,274 - -0.6 396,274 - -0.7 396,274 - +0.8 396,274 - -1.2 396,274 - +0.1 396,274 - -1.2 396,371 + -0.2 396,372 - +0.4 396,372 - -0.1 396,372 - -0.1 396,372 - -1.7 396,372 - -1.4 396,510 + MPMX19_05678 0.31 +0.1 396,510 + MPMX19_05678 0.31 -0.2 396,511 - MPMX19_05678 0.31 -1.3 396,636 + MPMX19_05678 0.60 -1.9 396,636 + MPMX19_05678 0.60 -2.1 396,636 + MPMX19_05678 0.60 -1.6 396,636 + MPMX19_05678 0.60 -0.3 396,636 + MPMX19_05678 0.60 -1.5 396,636 + MPMX19_05678 0.60 -1.1 396,636 + MPMX19_05678 0.60 -2.7 396,637 - MPMX19_05678 0.60 -0.1 396,637 - MPMX19_05678 0.60 -3.6 396,637 - MPMX19_05678 0.60 -0.6 396,637 - MPMX19_05678 0.60 -3.2 396,637 - MPMX19_05678 0.60 -2.5 396,637 - MPMX19_05678 0.60 -1.1 396,637 - MPMX19_05678 0.60 +0.2 396,736 + MPMX19_05678 0.83 -0.4 396,736 + MPMX19_05678 0.83 -1.9 396,736 + MPMX19_05678 0.83 -1.9 396,736 + MPMX19_05678 0.83 -2.2 396,736 + MPMX19_05678 0.83 -1.7 396,737 - MPMX19_05678 0.83 -1.6 396,737 - MPMX19_05678 0.83 -1.0 396,737 - MPMX19_05678 0.83 -1.6 396,737 - MPMX19_05678 0.83 -1.1 396,737 - MPMX19_05678 0.83 -1.0 396,737 - MPMX19_05678 0.83 -1.3 396,737 - MPMX19_05678 0.83 -1.4 396,737 - MPMX19_05678 0.83 -1.6 396,851 + -0.7 396,851 + -2.3 396,851 + -1.9 396,851 + -0.5 396,851 + -1.3 396,851 + -3.0 396,851 + -0.3 396,851 + -3.3 396,851 + -3.2 396,851 + -0.7 396,851 + -1.7 396,851 + -2.1 396,851 + -1.5 396,851 + -2.1 396,851 + -3.4 396,851 + -0.8 396,852 - -1.3 396,852 - -2.0 396,852 - -4.0 396,852 - -2.8 396,852 - -0.0 396,852 - -3.2 396,852 - -1.8 396,852 - -1.7 396,852 - -1.3 396,852 - -3.2 396,852 - -1.5 396,852 - -2.3 396,852 - -1.6 396,852 - -2.0 396,852 - -1.7 396,959 + MPMX19_05679 0.11 -2.3 396,960 - MPMX19_05679 0.11 -1.6 396,960 - MPMX19_05679 0.11 -0.8 396,995 + MPMX19_05679 0.14 -2.4 396,995 + MPMX19_05679 0.14 -3.1 396,995 + MPMX19_05679 0.14 -1.2 396,995 + MPMX19_05679 0.14 -1.9 396,996 - MPMX19_05679 0.14 -2.5 396,996 - MPMX19_05679 0.14 -1.5 396,996 - MPMX19_05679 0.14 -1.9 396,996 - MPMX19_05679 0.14 -3.4 396,996 - MPMX19_05679 0.14 -1.1 396,996 - MPMX19_05679 0.14 -3.3 397,298 + MPMX19_05679 0.37 -1.5 397,298 + MPMX19_05679 0.37 -2.6 397,436 + MPMX19_05679 0.47 -2.0 397,436 + MPMX19_05679 0.47 -0.9 397,436 + MPMX19_05679 0.47 -1.9 397,436 + MPMX19_05679 0.47 -2.6 397,436 + MPMX19_05679 0.47 -2.9 397,436 + MPMX19_05679 0.47 -2.0 397,436 + MPMX19_05679 0.47 +0.9 397,436 + MPMX19_05679 0.47 -1.0 397,436 + MPMX19_05679 0.47 -2.6 397,436 + MPMX19_05679 0.47 -0.0 397,436 + MPMX19_05679 0.47 -1.4 397,436 + MPMX19_05679 0.47 -2.8 397,436 + MPMX19_05679 0.47 -2.2 397,436 + MPMX19_05679 0.47 -0.6 397,436 + MPMX19_05679 0.47 -0.9 397,436 + MPMX19_05679 0.47 -1.8 397,436 + MPMX19_05679 0.47 -0.4 397,436 + MPMX19_05679 0.47 +0.3 397,436 + MPMX19_05679 0.47 -1.3 397,436 + MPMX19_05679 0.47 -0.6 397,436 + MPMX19_05679 0.47 -0.8 397,436 + MPMX19_05679 0.47 -0.7 397,436 + MPMX19_05679 0.47 -1.6 397,437 - MPMX19_05679 0.47 +0.4 397,437 - MPMX19_05679 0.47 -1.9 397,437 - MPMX19_05679 0.47 -3.1 397,437 - MPMX19_05679 0.47 -1.6 397,437 - MPMX19_05679 0.47 -1.5 397,437 - MPMX19_05679 0.47 -2.1 397,437 - MPMX19_05679 0.47 -3.9 397,437 - MPMX19_05679 0.47 -0.0 397,437 - MPMX19_05679 0.47 -1.6 397,437 - MPMX19_05679 0.47 -0.5 397,437 - MPMX19_05679 0.47 -0.8 397,437 - MPMX19_05679 0.47 -0.6 397,437 - MPMX19_05679 0.47 -2.5 397,437 - MPMX19_05679 0.47 -1.8 397,437 - MPMX19_05679 0.47 -0.2
Or see this region's nucleotide sequence