Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05658

Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_05657 and MPMX19_05658 are separated by 61 nucleotidesMPMX19_05658 and MPMX19_05659 are separated by 131 nucleotidesMPMX19_05659 and MPMX19_05660 are separated by 69 nucleotides MPMX19_05657: MPMX19_05657 - Succinyl-CoA:coenzyme A transferase, at 374,028 to 375,536 _05657 MPMX19_05658: MPMX19_05658 - hypothetical protein, at 375,598 to 375,783 _05658 MPMX19_05659: MPMX19_05659 - Ultraviolet N-glycosylase/AP lyase, at 375,915 to 376,634 _05659 MPMX19_05660: MPMX19_05660 - Sensor histidine kinase RcsC, at 376,704 to 378,536 _05660 Position (kb) 375 376Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 374.634 kb on + strand, within MPMX19_05657at 374.634 kb on + strand, within MPMX19_05657at 374.634 kb on + strand, within MPMX19_05657at 374.634 kb on + strand, within MPMX19_05657at 374.634 kb on + strand, within MPMX19_05657at 374.634 kb on + strand, within MPMX19_05657at 374.634 kb on + strand, within MPMX19_05657at 374.634 kb on + strand, within MPMX19_05657at 374.634 kb on + strand, within MPMX19_05657at 374.634 kb on + strand, within MPMX19_05657at 374.634 kb on + strand, within MPMX19_05657at 374.634 kb on + strand, within MPMX19_05657at 374.634 kb on + strand, within MPMX19_05657at 374.634 kb on + strand, within MPMX19_05657at 374.634 kb on + strand, within MPMX19_05657at 374.634 kb on + strand, within MPMX19_05657at 374.634 kb on + strand, within MPMX19_05657at 374.634 kb on + strand, within MPMX19_05657at 374.634 kb on + strand, within MPMX19_05657at 374.634 kb on + strand, within MPMX19_05657at 374.635 kb on - strand, within MPMX19_05657at 374.635 kb on - strand, within MPMX19_05657at 374.635 kb on - strand, within MPMX19_05657at 374.635 kb on - strand, within MPMX19_05657at 374.635 kb on - strand, within MPMX19_05657at 374.635 kb on - strand, within MPMX19_05657at 374.635 kb on - strand, within MPMX19_05657at 374.635 kb on - strand, within MPMX19_05657at 374.635 kb on - strand, within MPMX19_05657at 374.635 kb on - strand, within MPMX19_05657at 374.883 kb on + strand, within MPMX19_05657at 374.883 kb on + strand, within MPMX19_05657at 374.883 kb on + strand, within MPMX19_05657at 374.883 kb on + strand, within MPMX19_05657at 374.883 kb on + strand, within MPMX19_05657at 374.883 kb on + strand, within MPMX19_05657at 374.883 kb on + strand, within MPMX19_05657at 374.883 kb on + strand, within MPMX19_05657at 374.884 kb on - strand, within MPMX19_05657at 374.884 kb on - strand, within MPMX19_05657at 374.884 kb on - strand, within MPMX19_05657at 374.884 kb on - strand, within MPMX19_05657at 374.884 kb on - strand, within MPMX19_05657at 374.884 kb on - strand, within MPMX19_05657at 374.884 kb on - strand, within MPMX19_05657at 374.884 kb on - strand, within MPMX19_05657at 374.884 kb on - strand, within MPMX19_05657at 374.884 kb on - strand, within MPMX19_05657at 374.884 kb on - strand, within MPMX19_05657at 374.884 kb on - strand, within MPMX19_05657at 374.884 kb on - strand, within MPMX19_05657at 374.884 kb on - strand, within MPMX19_05657at 374.884 kb on - strand, within MPMX19_05657at 374.884 kb on - strand, within MPMX19_05657at 374.979 kb on + strand, within MPMX19_05657at 374.979 kb on + strand, within MPMX19_05657at 374.979 kb on + strand, within MPMX19_05657at 374.979 kb on + strand, within MPMX19_05657at 374.979 kb on + strand, within MPMX19_05657at 374.980 kb on - strand, within MPMX19_05657at 374.980 kb on - strand, within MPMX19_05657at 375.009 kb on + strand, within MPMX19_05657at 375.009 kb on + strand, within MPMX19_05657at 375.009 kb on + strand, within MPMX19_05657at 375.009 kb on + strand, within MPMX19_05657at 375.009 kb on + strand, within MPMX19_05657at 375.009 kb on + strand, within MPMX19_05657at 375.009 kb on + strand, within MPMX19_05657at 375.009 kb on + strand, within MPMX19_05657at 375.009 kb on + strand, within MPMX19_05657at 375.009 kb on + strand, within MPMX19_05657at 375.009 kb on + strand, within MPMX19_05657at 375.009 kb on + strand, within MPMX19_05657at 375.009 kb on + strand, within MPMX19_05657at 375.009 kb on + strand, within MPMX19_05657at 375.010 kb on - strand, within MPMX19_05657at 375.010 kb on - strand, within MPMX19_05657at 375.010 kb on - strand, within MPMX19_05657at 375.010 kb on - strand, within MPMX19_05657at 375.010 kb on - strand, within MPMX19_05657at 375.010 kb on - strand, within MPMX19_05657at 375.010 kb on - strand, within MPMX19_05657at 375.010 kb on - strand, within MPMX19_05657at 375.010 kb on - strand, within MPMX19_05657at 375.010 kb on - strand, within MPMX19_05657at 375.010 kb on - strand, within MPMX19_05657at 375.010 kb on - strand, within MPMX19_05657at 375.114 kb on + strand, within MPMX19_05657at 375.114 kb on + strand, within MPMX19_05657at 375.114 kb on + strand, within MPMX19_05657at 375.114 kb on + strand, within MPMX19_05657at 375.114 kb on + strand, within MPMX19_05657at 375.114 kb on + strand, within MPMX19_05657at 375.114 kb on + strand, within MPMX19_05657at 375.114 kb on + strand, within MPMX19_05657at 375.114 kb on + strand, within MPMX19_05657at 375.114 kb on + strand, within MPMX19_05657at 375.114 kb on + strand, within MPMX19_05657at 375.114 kb on + strand, within MPMX19_05657at 375.115 kb on - strand, within MPMX19_05657at 375.115 kb on - strand, within MPMX19_05657at 375.115 kb on - strand, within MPMX19_05657at 375.115 kb on - strand, within MPMX19_05657at 375.115 kb on - strand, within MPMX19_05657at 375.115 kb on - strand, within MPMX19_05657at 375.115 kb on - strand, within MPMX19_05657at 375.414 kb on + strandat 375.414 kb on + strandat 375.414 kb on + strandat 375.415 kb on - strandat 375.415 kb on - strandat 375.415 kb on - strandat 375.415 kb on - strandat 375.415 kb on - strandat 375.534 kb on + strandat 375.534 kb on + strandat 375.534 kb on + strandat 375.534 kb on + strandat 375.534 kb on + strandat 375.535 kb on - strandat 375.535 kb on - strandat 375.535 kb on - strandat 375.629 kb on + strand, within MPMX19_05658at 375.647 kb on + strand, within MPMX19_05658at 375.648 kb on - strand, within MPMX19_05658at 375.650 kb on + strand, within MPMX19_05658at 375.650 kb on + strand, within MPMX19_05658at 375.651 kb on - strand, within MPMX19_05658at 375.798 kb on + strandat 375.838 kb on + strandat 375.838 kb on + strandat 375.838 kb on + strandat 375.839 kb on - strandat 375.839 kb on - strandat 375.839 kb on - strandat 375.840 kb on + strandat 375.840 kb on + strandat 375.840 kb on + strandat 375.841 kb on - strandat 375.841 kb on - strandat 376.009 kb on + strand, within MPMX19_05659at 376.009 kb on + strand, within MPMX19_05659at 376.009 kb on + strand, within MPMX19_05659at 376.009 kb on + strand, within MPMX19_05659at 376.010 kb on - strand, within MPMX19_05659at 376.010 kb on - strand, within MPMX19_05659at 376.012 kb on + strand, within MPMX19_05659at 376.012 kb on + strand, within MPMX19_05659at 376.012 kb on + strand, within MPMX19_05659at 376.012 kb on + strand, within MPMX19_05659at 376.012 kb on + strand, within MPMX19_05659at 376.012 kb on + strand, within MPMX19_05659at 376.012 kb on + strand, within MPMX19_05659at 376.012 kb on + strand, within MPMX19_05659at 376.013 kb on - strand, within MPMX19_05659at 376.013 kb on - strand, within MPMX19_05659at 376.013 kb on - strand, within MPMX19_05659at 376.013 kb on - strand, within MPMX19_05659at 376.013 kb on - strand, within MPMX19_05659at 376.013 kb on - strand, within MPMX19_05659at 376.013 kb on - strand, within MPMX19_05659at 376.013 kb on - strand, within MPMX19_05659at 376.013 kb on - strand, within MPMX19_05659at 376.013 kb on - strand, within MPMX19_05659at 376.013 kb on - strand, within MPMX19_05659at 376.057 kb on + strand, within MPMX19_05659at 376.057 kb on + strand, within MPMX19_05659at 376.057 kb on + strand, within MPMX19_05659at 376.057 kb on + strand, within MPMX19_05659at 376.057 kb on + strand, within MPMX19_05659at 376.057 kb on + strand, within MPMX19_05659at 376.058 kb on - strand, within MPMX19_05659at 376.058 kb on - strand, within MPMX19_05659at 376.058 kb on - strand, within MPMX19_05659at 376.058 kb on - strand, within MPMX19_05659at 376.058 kb on - strand, within MPMX19_05659at 376.058 kb on - strand, within MPMX19_05659at 376.058 kb on - strand, within MPMX19_05659at 376.552 kb on + strand, within MPMX19_05659at 376.553 kb on - strand, within MPMX19_05659at 376.553 kb on - strand, within MPMX19_05659at 376.553 kb on - strand, within MPMX19_05659at 376.570 kb on + strandat 376.570 kb on + strandat 376.570 kb on + strandat 376.570 kb on + strandat 376.571 kb on - strandat 376.571 kb on - strandat 376.571 kb on - strandat 376.571 kb on - strandat 376.571 kb on - strandat 376.659 kb on + strandat 376.659 kb on + strandat 376.705 kb on + strandat 376.706 kb on - strandat 376.706 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
remove
374,634 + MPMX19_05657 0.40 +0.6
374,634 + MPMX19_05657 0.40 -1.4
374,634 + MPMX19_05657 0.40 -0.8
374,634 + MPMX19_05657 0.40 +0.1
374,634 + MPMX19_05657 0.40 -0.4
374,634 + MPMX19_05657 0.40 +0.3
374,634 + MPMX19_05657 0.40 -0.0
374,634 + MPMX19_05657 0.40 -1.3
374,634 + MPMX19_05657 0.40 -0.0
374,634 + MPMX19_05657 0.40 +2.1
374,634 + MPMX19_05657 0.40 -0.2
374,634 + MPMX19_05657 0.40 -0.0
374,634 + MPMX19_05657 0.40 -1.6
374,634 + MPMX19_05657 0.40 -1.3
374,634 + MPMX19_05657 0.40 -1.3
374,634 + MPMX19_05657 0.40 -0.0
374,634 + MPMX19_05657 0.40 -1.5
374,634 + MPMX19_05657 0.40 -0.5
374,634 + MPMX19_05657 0.40 -0.5
374,634 + MPMX19_05657 0.40 -0.7
374,635 - MPMX19_05657 0.40 -1.0
374,635 - MPMX19_05657 0.40 -0.4
374,635 - MPMX19_05657 0.40 -1.0
374,635 - MPMX19_05657 0.40 -1.4
374,635 - MPMX19_05657 0.40 +0.7
374,635 - MPMX19_05657 0.40 +0.1
374,635 - MPMX19_05657 0.40 +0.2
374,635 - MPMX19_05657 0.40 -1.4
374,635 - MPMX19_05657 0.40 +0.6
374,635 - MPMX19_05657 0.40 +2.0
374,883 + MPMX19_05657 0.57 +0.9
374,883 + MPMX19_05657 0.57 +0.3
374,883 + MPMX19_05657 0.57 -0.6
374,883 + MPMX19_05657 0.57 +1.0
374,883 + MPMX19_05657 0.57 -0.3
374,883 + MPMX19_05657 0.57 +0.2
374,883 + MPMX19_05657 0.57 -0.6
374,883 + MPMX19_05657 0.57 -1.3
374,884 - MPMX19_05657 0.57 +0.2
374,884 - MPMX19_05657 0.57 +0.1
374,884 - MPMX19_05657 0.57 +1.1
374,884 - MPMX19_05657 0.57 -1.1
374,884 - MPMX19_05657 0.57 -1.4
374,884 - MPMX19_05657 0.57 -2.1
374,884 - MPMX19_05657 0.57 -1.6
374,884 - MPMX19_05657 0.57 +1.2
374,884 - MPMX19_05657 0.57 +2.1
374,884 - MPMX19_05657 0.57 +0.9
374,884 - MPMX19_05657 0.57 -0.0
374,884 - MPMX19_05657 0.57 +1.0
374,884 - MPMX19_05657 0.57 -0.2
374,884 - MPMX19_05657 0.57 +0.2
374,884 - MPMX19_05657 0.57 -0.4
374,884 - MPMX19_05657 0.57 +0.4
374,979 + MPMX19_05657 0.63 +0.7
374,979 + MPMX19_05657 0.63 +0.2
374,979 + MPMX19_05657 0.63 -2.4
374,979 + MPMX19_05657 0.63 +1.2
374,979 + MPMX19_05657 0.63 +1.0
374,980 - MPMX19_05657 0.63 +1.3
374,980 - MPMX19_05657 0.63 -1.6
375,009 + MPMX19_05657 0.65 -2.3
375,009 + MPMX19_05657 0.65 -0.8
375,009 + MPMX19_05657 0.65 +0.1
375,009 + MPMX19_05657 0.65 -1.6
375,009 + MPMX19_05657 0.65 -0.8
375,009 + MPMX19_05657 0.65 -0.4
375,009 + MPMX19_05657 0.65 -0.8
375,009 + MPMX19_05657 0.65 -2.0
375,009 + MPMX19_05657 0.65 +0.1
375,009 + MPMX19_05657 0.65 -1.4
375,009 + MPMX19_05657 0.65 -1.6
375,009 + MPMX19_05657 0.65 -0.1
375,009 + MPMX19_05657 0.65 -0.9
375,009 + MPMX19_05657 0.65 -0.6
375,010 - MPMX19_05657 0.65 +1.0
375,010 - MPMX19_05657 0.65 +0.1
375,010 - MPMX19_05657 0.65 -0.0
375,010 - MPMX19_05657 0.65 -1.3
375,010 - MPMX19_05657 0.65 -2.4
375,010 - MPMX19_05657 0.65 -1.4
375,010 - MPMX19_05657 0.65 -0.2
375,010 - MPMX19_05657 0.65 -1.6
375,010 - MPMX19_05657 0.65 -1.4
375,010 - MPMX19_05657 0.65 -0.3
375,010 - MPMX19_05657 0.65 -0.3
375,010 - MPMX19_05657 0.65 -1.4
375,114 + MPMX19_05657 0.72 +0.4
375,114 + MPMX19_05657 0.72 -0.3
375,114 + MPMX19_05657 0.72 +0.3
375,114 + MPMX19_05657 0.72 -0.4
375,114 + MPMX19_05657 0.72 +1.9
375,114 + MPMX19_05657 0.72 -0.2
375,114 + MPMX19_05657 0.72 -1.2
375,114 + MPMX19_05657 0.72 +0.4
375,114 + MPMX19_05657 0.72 -0.8
375,114 + MPMX19_05657 0.72 -2.0
375,114 + MPMX19_05657 0.72 -0.4
375,114 + MPMX19_05657 0.72 -0.0
375,115 - MPMX19_05657 0.72 -1.0
375,115 - MPMX19_05657 0.72 -1.5
375,115 - MPMX19_05657 0.72 -0.3
375,115 - MPMX19_05657 0.72 -0.1
375,115 - MPMX19_05657 0.72 -2.1
375,115 - MPMX19_05657 0.72 +0.2
375,115 - MPMX19_05657 0.72 -0.1
375,414 + -2.0
375,414 + -1.0
375,414 + -1.8
375,415 - +1.3
375,415 - -0.2
375,415 - +0.3
375,415 - +0.7
375,415 - -1.7
375,534 + +0.1
375,534 + -1.0
375,534 + +0.8
375,534 + -0.8
375,534 + +0.6
375,535 - -0.3
375,535 - -1.8
375,535 - +0.3
375,629 + MPMX19_05658 0.17 -1.9
375,647 + MPMX19_05658 0.26 -0.1
375,648 - MPMX19_05658 0.27 -0.6
375,650 + MPMX19_05658 0.28 -2.0
375,650 + MPMX19_05658 0.28 -0.4
375,651 - MPMX19_05658 0.28 -0.8
375,798 + -1.0
375,838 + -0.7
375,838 + -0.6
375,838 + +0.6
375,839 - +2.1
375,839 - +1.2
375,839 - +0.2
375,840 + +0.6
375,840 + -0.3
375,840 + -0.5
375,841 - -0.1
375,841 - -1.3
376,009 + MPMX19_05659 0.13 +1.1
376,009 + MPMX19_05659 0.13 -1.0
376,009 + MPMX19_05659 0.13 +0.2
376,009 + MPMX19_05659 0.13 +0.8
376,010 - MPMX19_05659 0.13 -0.0
376,010 - MPMX19_05659 0.13 -0.8
376,012 + MPMX19_05659 0.13 -1.1
376,012 + MPMX19_05659 0.13 -0.6
376,012 + MPMX19_05659 0.13 +0.1
376,012 + MPMX19_05659 0.13 -2.7
376,012 + MPMX19_05659 0.13 +1.2
376,012 + MPMX19_05659 0.13 -1.4
376,012 + MPMX19_05659 0.13 -0.1
376,012 + MPMX19_05659 0.13 -0.6
376,013 - MPMX19_05659 0.14 +0.7
376,013 - MPMX19_05659 0.14 +0.1
376,013 - MPMX19_05659 0.14 -0.2
376,013 - MPMX19_05659 0.14 -1.9
376,013 - MPMX19_05659 0.14 +0.3
376,013 - MPMX19_05659 0.14 -1.3
376,013 - MPMX19_05659 0.14 -2.0
376,013 - MPMX19_05659 0.14 -0.0
376,013 - MPMX19_05659 0.14 -0.3
376,013 - MPMX19_05659 0.14 +0.1
376,013 - MPMX19_05659 0.14 -1.0
376,057 + MPMX19_05659 0.20 +0.6
376,057 + MPMX19_05659 0.20 -0.8
376,057 + MPMX19_05659 0.20 -1.7
376,057 + MPMX19_05659 0.20 +1.2
376,057 + MPMX19_05659 0.20 +0.9
376,057 + MPMX19_05659 0.20 -0.8
376,058 - MPMX19_05659 0.20 +0.6
376,058 - MPMX19_05659 0.20 +0.1
376,058 - MPMX19_05659 0.20 +1.6
376,058 - MPMX19_05659 0.20 -0.2
376,058 - MPMX19_05659 0.20 -2.4
376,058 - MPMX19_05659 0.20 -1.6
376,058 - MPMX19_05659 0.20 -0.7
376,552 + MPMX19_05659 0.88 -1.0
376,553 - MPMX19_05659 0.89 +0.6
376,553 - MPMX19_05659 0.89 -0.2
376,553 - MPMX19_05659 0.89 -0.6
376,570 + -2.8
376,570 + -1.0
376,570 + -1.6
376,570 + -0.5
376,571 - -1.7
376,571 - +1.8
376,571 - -0.2
376,571 - +0.7
376,571 - -2.1
376,659 + +0.8
376,659 + -1.4
376,705 + -0.0
376,706 - +1.0
376,706 - -1.4

Or see this region's nucleotide sequence