Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05022 and MPMX19_05023 are separated by 67 nucleotides MPMX19_05023 and MPMX19_05024 are separated by 211 nucleotides
MPMX19_05022: MPMX19_05022 - hypothetical protein, at 507,738 to 508,430
_05022
MPMX19_05023: MPMX19_05023 - hypothetical protein, at 508,498 to 509,124
_05023
MPMX19_05024: MPMX19_05024 - Cytochrome bd-II ubiquinol oxidase subunit 1, at 509,336 to 510,733
_05024
Position (kb) 508
509
510 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 507.765 kb on + strand at 507.766 kb on - strand at 507.766 kb on - strand at 507.766 kb on - strand at 507.766 kb on - strand at 507.766 kb on - strand at 507.801 kb on + strand at 507.801 kb on + strand at 507.802 kb on - strand at 507.945 kb on + strand, within MPMX19_05022 at 507.945 kb on + strand, within MPMX19_05022 at 507.945 kb on + strand, within MPMX19_05022 at 507.945 kb on + strand, within MPMX19_05022 at 507.945 kb on + strand, within MPMX19_05022 at 507.946 kb on - strand, within MPMX19_05022 at 507.946 kb on - strand, within MPMX19_05022 at 507.946 kb on - strand, within MPMX19_05022 at 507.946 kb on - strand, within MPMX19_05022 at 507.946 kb on - strand, within MPMX19_05022 at 507.946 kb on - strand, within MPMX19_05022 at 507.946 kb on - strand, within MPMX19_05022 at 507.946 kb on - strand, within MPMX19_05022 at 507.946 kb on - strand, within MPMX19_05022 at 507.946 kb on - strand, within MPMX19_05022 at 507.946 kb on - strand, within MPMX19_05022 at 508.104 kb on + strand, within MPMX19_05022 at 508.104 kb on + strand, within MPMX19_05022 at 508.104 kb on + strand, within MPMX19_05022 at 508.104 kb on + strand, within MPMX19_05022 at 508.105 kb on - strand, within MPMX19_05022 at 508.105 kb on - strand, within MPMX19_05022 at 508.105 kb on - strand, within MPMX19_05022 at 508.105 kb on - strand, within MPMX19_05022 at 508.105 kb on - strand, within MPMX19_05022 at 508.121 kb on + strand, within MPMX19_05022 at 508.121 kb on + strand, within MPMX19_05022 at 508.121 kb on + strand, within MPMX19_05022 at 508.122 kb on - strand, within MPMX19_05022 at 508.122 kb on - strand, within MPMX19_05022 at 508.332 kb on + strand, within MPMX19_05022 at 508.332 kb on + strand, within MPMX19_05022 at 508.332 kb on + strand, within MPMX19_05022 at 508.332 kb on + strand, within MPMX19_05022 at 508.332 kb on + strand, within MPMX19_05022 at 508.332 kb on + strand, within MPMX19_05022 at 508.332 kb on + strand, within MPMX19_05022 at 508.332 kb on + strand, within MPMX19_05022 at 508.333 kb on - strand, within MPMX19_05022 at 508.333 kb on - strand, within MPMX19_05022 at 508.333 kb on - strand, within MPMX19_05022 at 508.333 kb on - strand, within MPMX19_05022 at 508.333 kb on - strand, within MPMX19_05022 at 508.333 kb on - strand, within MPMX19_05022 at 508.333 kb on - strand, within MPMX19_05022 at 508.365 kb on + strand at 508.365 kb on + strand at 508.365 kb on + strand at 508.365 kb on + strand at 508.366 kb on - strand at 508.366 kb on - strand at 508.366 kb on - strand at 508.366 kb on - strand at 508.450 kb on + strand at 508.450 kb on + strand at 508.450 kb on + strand at 508.451 kb on - strand at 508.451 kb on - strand at 508.451 kb on - strand at 508.451 kb on - strand at 508.451 kb on - strand at 508.451 kb on - strand at 508.507 kb on + strand at 508.507 kb on + strand at 508.507 kb on + strand at 508.507 kb on + strand at 508.507 kb on + strand at 508.507 kb on + strand at 508.507 kb on + strand at 508.508 kb on - strand at 508.508 kb on - strand at 508.508 kb on - strand at 508.508 kb on - strand at 508.508 kb on - strand at 508.508 kb on - strand at 508.508 kb on - strand at 508.508 kb on - strand at 508.508 kb on - strand at 508.663 kb on + strand, within MPMX19_05023 at 508.664 kb on - strand, within MPMX19_05023 at 508.664 kb on - strand, within MPMX19_05023 at 508.664 kb on - strand, within MPMX19_05023 at 509.110 kb on + strand at 509.110 kb on + strand at 509.110 kb on + strand at 509.111 kb on - strand at 509.111 kb on - strand at 509.111 kb on - strand at 509.199 kb on + strand at 509.199 kb on + strand at 509.199 kb on + strand at 509.199 kb on + strand at 509.199 kb on + strand at 509.200 kb on - strand at 509.200 kb on - strand at 509.254 kb on + strand at 509.254 kb on + strand at 509.254 kb on + strand at 509.254 kb on + strand at 509.254 kb on + strand at 509.254 kb on + strand at 509.254 kb on + strand at 509.254 kb on + strand at 509.254 kb on + strand at 509.254 kb on + strand at 509.254 kb on + strand at 509.254 kb on + strand at 509.254 kb on + strand at 509.254 kb on + strand at 509.254 kb on + strand at 509.254 kb on + strand at 509.254 kb on + strand at 509.254 kb on + strand at 509.254 kb on + strand at 509.254 kb on + strand at 509.254 kb on + strand at 509.254 kb on + strand at 509.254 kb on + strand at 509.255 kb on - strand at 509.255 kb on - strand at 509.255 kb on - strand at 509.255 kb on - strand at 509.255 kb on - strand at 509.255 kb on - strand at 509.255 kb on - strand at 509.255 kb on - strand at 509.255 kb on - strand at 509.255 kb on - strand at 509.255 kb on - strand at 509.255 kb on - strand at 509.255 kb on - strand at 509.255 kb on - strand at 509.255 kb on - strand at 509.255 kb on - strand at 509.255 kb on - strand at 509.255 kb on - strand at 509.255 kb on - strand at 509.255 kb on - strand at 509.255 kb on - strand at 509.255 kb on - strand at 509.255 kb on - strand at 509.255 kb on - strand at 509.255 kb on - strand at 509.303 kb on + strand at 509.303 kb on + strand at 509.303 kb on + strand at 509.480 kb on + strand, within MPMX19_05024 at 509.480 kb on + strand, within MPMX19_05024 at 509.480 kb on + strand, within MPMX19_05024 at 509.480 kb on + strand, within MPMX19_05024 at 509.480 kb on + strand, within MPMX19_05024 at 509.481 kb on - strand, within MPMX19_05024 at 509.481 kb on - strand, within MPMX19_05024 at 509.561 kb on + strand, within MPMX19_05024 at 509.562 kb on - strand, within MPMX19_05024 at 509.562 kb on - strand, within MPMX19_05024 at 509.562 kb on - strand, within MPMX19_05024 at 509.562 kb on - strand, within MPMX19_05024 at 509.562 kb on - strand, within MPMX19_05024 at 509.562 kb on - strand, within MPMX19_05024 at 509.630 kb on + strand, within MPMX19_05024 at 509.630 kb on + strand, within MPMX19_05024 at 509.631 kb on - strand, within MPMX19_05024 at 509.631 kb on - strand, within MPMX19_05024 at 509.829 kb on - strand, within MPMX19_05024 at 509.829 kb on - strand, within MPMX19_05024 at 509.876 kb on + strand, within MPMX19_05024 at 509.948 kb on + strand, within MPMX19_05024 at 509.948 kb on + strand, within MPMX19_05024 at 509.948 kb on + strand, within MPMX19_05024 at 509.948 kb on + strand, within MPMX19_05024 at 509.948 kb on + strand, within MPMX19_05024 at 509.948 kb on + strand, within MPMX19_05024 at 509.948 kb on + strand, within MPMX19_05024 at 509.948 kb on + strand, within MPMX19_05024 at 509.948 kb on + strand, within MPMX19_05024 at 509.948 kb on + strand, within MPMX19_05024 at 509.948 kb on + strand, within MPMX19_05024 at 509.948 kb on + strand, within MPMX19_05024 at 509.948 kb on + strand, within MPMX19_05024 at 509.948 kb on + strand, within MPMX19_05024 at 509.948 kb on + strand, within MPMX19_05024 at 509.949 kb on - strand, within MPMX19_05024 at 509.949 kb on - strand, within MPMX19_05024 at 509.949 kb on - strand, within MPMX19_05024 at 509.949 kb on - strand, within MPMX19_05024 at 509.949 kb on - strand, within MPMX19_05024 at 509.949 kb on - strand, within MPMX19_05024 at 509.949 kb on - strand, within MPMX19_05024 at 509.949 kb on - strand, within MPMX19_05024
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 507,765 + +0.2 507,766 - +0.8 507,766 - -1.9 507,766 - -0.1 507,766 - -0.2 507,766 - -0.0 507,801 + +0.4 507,801 + -1.0 507,802 - -1.1 507,945 + MPMX19_05022 0.30 +1.2 507,945 + MPMX19_05022 0.30 -0.7 507,945 + MPMX19_05022 0.30 -1.0 507,945 + MPMX19_05022 0.30 -0.7 507,945 + MPMX19_05022 0.30 -1.4 507,946 - MPMX19_05022 0.30 +1.8 507,946 - MPMX19_05022 0.30 -1.9 507,946 - MPMX19_05022 0.30 -0.7 507,946 - MPMX19_05022 0.30 -0.0 507,946 - MPMX19_05022 0.30 +0.4 507,946 - MPMX19_05022 0.30 +0.4 507,946 - MPMX19_05022 0.30 -0.7 507,946 - MPMX19_05022 0.30 -0.6 507,946 - MPMX19_05022 0.30 +0.6 507,946 - MPMX19_05022 0.30 -0.2 507,946 - MPMX19_05022 0.30 -1.0 508,104 + MPMX19_05022 0.53 -0.6 508,104 + MPMX19_05022 0.53 -0.7 508,104 + MPMX19_05022 0.53 +0.6 508,104 + MPMX19_05022 0.53 -0.5 508,105 - MPMX19_05022 0.53 -0.7 508,105 - MPMX19_05022 0.53 +1.2 508,105 - MPMX19_05022 0.53 +0.4 508,105 - MPMX19_05022 0.53 -0.8 508,105 - MPMX19_05022 0.53 +1.1 508,121 + MPMX19_05022 0.55 -0.5 508,121 + MPMX19_05022 0.55 -1.9 508,121 + MPMX19_05022 0.55 +0.8 508,122 - MPMX19_05022 0.55 -0.2 508,122 - MPMX19_05022 0.55 -0.1 508,332 + MPMX19_05022 0.86 -1.2 508,332 + MPMX19_05022 0.86 -2.0 508,332 + MPMX19_05022 0.86 +0.1 508,332 + MPMX19_05022 0.86 +0.6 508,332 + MPMX19_05022 0.86 +1.7 508,332 + MPMX19_05022 0.86 +1.7 508,332 + MPMX19_05022 0.86 +0.1 508,332 + MPMX19_05022 0.86 -0.1 508,333 - MPMX19_05022 0.86 -1.2 508,333 - MPMX19_05022 0.86 +2.2 508,333 - MPMX19_05022 0.86 -0.1 508,333 - MPMX19_05022 0.86 -0.6 508,333 - MPMX19_05022 0.86 -2.3 508,333 - MPMX19_05022 0.86 -0.6 508,333 - MPMX19_05022 0.86 +0.8 508,365 + -0.4 508,365 + -0.8 508,365 + -0.2 508,365 + +0.4 508,366 - +1.1 508,366 - -0.4 508,366 - -1.0 508,366 - -1.4 508,450 + +0.8 508,450 + -2.5 508,450 + -1.2 508,451 - +0.7 508,451 - +0.4 508,451 - +0.5 508,451 - -0.0 508,451 - -2.3 508,451 - -0.3 508,507 + +0.4 508,507 + +0.5 508,507 + +0.8 508,507 + -0.4 508,507 + +0.1 508,507 + -1.7 508,507 + -0.9 508,508 - -0.9 508,508 - -1.4 508,508 - +0.1 508,508 - +0.2 508,508 - -0.5 508,508 - -1.9 508,508 - -0.1 508,508 - -1.2 508,508 - -0.3 508,663 + MPMX19_05023 0.26 -0.9 508,664 - MPMX19_05023 0.26 -0.4 508,664 - MPMX19_05023 0.26 -2.0 508,664 - MPMX19_05023 0.26 +0.4 509,110 + -0.9 509,110 + -0.7 509,110 + -0.4 509,111 - +1.2 509,111 - -1.2 509,111 - +0.0 509,199 + +0.3 509,199 + -0.7 509,199 + +1.1 509,199 + -0.7 509,199 + +0.1 509,200 - -0.2 509,200 - -0.6 509,254 + -0.1 509,254 + -0.1 509,254 + -0.6 509,254 + -0.5 509,254 + +0.2 509,254 + -0.7 509,254 + -1.0 509,254 + -1.0 509,254 + -0.3 509,254 + -1.1 509,254 + +0.6 509,254 + +0.8 509,254 + +0.6 509,254 + -1.2 509,254 + +0.4 509,254 + -0.4 509,254 + -1.1 509,254 + -1.1 509,254 + +0.4 509,254 + +0.6 509,254 + -1.1 509,254 + -1.6 509,254 + -1.4 509,255 - -1.0 509,255 - +2.0 509,255 - -0.8 509,255 - +1.2 509,255 - -0.2 509,255 - -1.0 509,255 - +1.4 509,255 - +1.4 509,255 - +0.4 509,255 - -0.5 509,255 - -0.8 509,255 - -0.7 509,255 - -0.6 509,255 - +0.8 509,255 - -0.6 509,255 - +0.1 509,255 - -0.5 509,255 - -0.9 509,255 - -0.4 509,255 - -1.9 509,255 - -1.5 509,255 - -1.2 509,255 - -0.3 509,255 - -0.8 509,255 - -0.4 509,303 + -0.0 509,303 + -0.4 509,303 + -1.4 509,480 + MPMX19_05024 0.10 -1.2 509,480 + MPMX19_05024 0.10 +1.6 509,480 + MPMX19_05024 0.10 -1.8 509,480 + MPMX19_05024 0.10 -0.8 509,480 + MPMX19_05024 0.10 +2.1 509,481 - MPMX19_05024 0.10 -0.3 509,481 - MPMX19_05024 0.10 -0.2 509,561 + MPMX19_05024 0.16 +0.6 509,562 - MPMX19_05024 0.16 -0.5 509,562 - MPMX19_05024 0.16 -0.2 509,562 - MPMX19_05024 0.16 -0.4 509,562 - MPMX19_05024 0.16 -0.1 509,562 - MPMX19_05024 0.16 +0.6 509,562 - MPMX19_05024 0.16 -0.9 509,630 + MPMX19_05024 0.21 -1.0 509,630 + MPMX19_05024 0.21 +2.0 509,631 - MPMX19_05024 0.21 -0.9 509,631 - MPMX19_05024 0.21 -0.5 509,829 - MPMX19_05024 0.35 +1.2 509,829 - MPMX19_05024 0.35 +0.7 509,876 + MPMX19_05024 0.39 -0.6 509,948 + MPMX19_05024 0.44 -0.3 509,948 + MPMX19_05024 0.44 -0.7 509,948 + MPMX19_05024 0.44 -0.1 509,948 + MPMX19_05024 0.44 +0.5 509,948 + MPMX19_05024 0.44 +1.6 509,948 + MPMX19_05024 0.44 +0.5 509,948 + MPMX19_05024 0.44 -0.3 509,948 + MPMX19_05024 0.44 -1.0 509,948 + MPMX19_05024 0.44 -0.7 509,948 + MPMX19_05024 0.44 +0.2 509,948 + MPMX19_05024 0.44 -0.0 509,948 + MPMX19_05024 0.44 -0.1 509,948 + MPMX19_05024 0.44 -0.7 509,948 + MPMX19_05024 0.44 +0.3 509,948 + MPMX19_05024 0.44 -2.3 509,949 - MPMX19_05024 0.44 +0.6 509,949 - MPMX19_05024 0.44 -0.7 509,949 - MPMX19_05024 0.44 +0.6 509,949 - MPMX19_05024 0.44 -3.0 509,949 - MPMX19_05024 0.44 +0.2 509,949 - MPMX19_05024 0.44 -0.2 509,949 - MPMX19_05024 0.44 -1.1 509,949 - MPMX19_05024 0.44 -0.4
Or see this region's nucleotide sequence