Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04970 and MPMX19_04971 overlap by 4 nucleotides MPMX19_04971 and MPMX19_04972 are separated by 136 nucleotides
MPMX19_04970: MPMX19_04970 - Protein-glutamate methylesterase/protein-glutamine glutaminase, at 436,644 to 439,628
_04970
MPMX19_04971: MPMX19_04971 - Sensor histidine kinase RcsC, at 439,625 to 442,258
_04971
MPMX19_04972: MPMX19_04972 - hypothetical protein, at 442,395 to 443,723
_04972
Position (kb) 439
440
441
442
443 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 438.795 kb on + strand, within MPMX19_04970 at 438.795 kb on + strand, within MPMX19_04970 at 438.795 kb on + strand, within MPMX19_04970 at 438.795 kb on + strand, within MPMX19_04970 at 438.796 kb on - strand, within MPMX19_04970 at 438.796 kb on - strand, within MPMX19_04970 at 438.796 kb on - strand, within MPMX19_04970 at 438.796 kb on - strand, within MPMX19_04970 at 438.796 kb on - strand, within MPMX19_04970 at 438.796 kb on - strand, within MPMX19_04970 at 438.813 kb on + strand, within MPMX19_04970 at 438.814 kb on - strand, within MPMX19_04970 at 439.009 kb on - strand, within MPMX19_04970 at 439.009 kb on - strand, within MPMX19_04970 at 439.116 kb on + strand, within MPMX19_04970 at 439.116 kb on + strand, within MPMX19_04970 at 439.116 kb on + strand, within MPMX19_04970 at 439.117 kb on - strand, within MPMX19_04970 at 439.341 kb on + strand at 439.341 kb on + strand at 439.341 kb on + strand at 439.341 kb on + strand at 439.341 kb on + strand at 439.342 kb on - strand at 439.342 kb on - strand at 439.342 kb on - strand at 439.342 kb on - strand at 439.342 kb on - strand at 439.342 kb on - strand at 439.342 kb on - strand at 439.455 kb on + strand at 439.455 kb on + strand at 439.456 kb on - strand at 439.456 kb on - strand at 439.456 kb on - strand at 439.552 kb on + strand at 439.552 kb on + strand at 439.552 kb on + strand at 439.553 kb on - strand at 439.553 kb on - strand at 439.553 kb on - strand at 439.553 kb on - strand at 439.553 kb on - strand at 439.553 kb on - strand at 439.553 kb on - strand at 439.553 kb on - strand at 439.742 kb on + strand at 439.742 kb on + strand at 439.742 kb on + strand at 439.742 kb on + strand at 439.742 kb on + strand at 439.742 kb on + strand at 439.742 kb on + strand at 439.742 kb on + strand at 439.742 kb on + strand at 439.742 kb on + strand at 439.742 kb on + strand at 439.742 kb on + strand at 439.742 kb on + strand at 439.742 kb on + strand at 439.742 kb on + strand at 439.742 kb on + strand at 439.742 kb on + strand at 439.742 kb on + strand at 439.743 kb on - strand at 439.743 kb on - strand at 439.743 kb on - strand at 439.743 kb on - strand at 439.743 kb on - strand at 439.743 kb on - strand at 439.743 kb on - strand at 439.743 kb on - strand at 439.743 kb on - strand at 439.743 kb on - strand at 439.743 kb on - strand at 439.743 kb on - strand at 439.743 kb on - strand at 439.743 kb on - strand at 439.743 kb on - strand at 439.743 kb on - strand at 439.743 kb on - strand at 439.743 kb on - strand at 439.743 kb on - strand at 439.743 kb on - strand at 439.743 kb on - strand at 439.743 kb on - strand at 439.743 kb on - strand at 439.743 kb on - strand at 439.743 kb on - strand at 439.743 kb on - strand at 439.743 kb on - strand at 439.743 kb on - strand at 439.823 kb on + strand at 439.823 kb on + strand at 439.823 kb on + strand at 439.823 kb on + strand at 439.824 kb on - strand at 439.824 kb on - strand at 439.824 kb on - strand at 440.048 kb on + strand, within MPMX19_04971 at 440.049 kb on - strand, within MPMX19_04971 at 440.049 kb on - strand, within MPMX19_04971 at 440.222 kb on + strand, within MPMX19_04971 at 440.223 kb on - strand, within MPMX19_04971 at 440.223 kb on - strand, within MPMX19_04971 at 441.662 kb on + strand, within MPMX19_04971 at 441.662 kb on + strand, within MPMX19_04971 at 441.662 kb on + strand, within MPMX19_04971 at 441.662 kb on + strand, within MPMX19_04971 at 441.662 kb on + strand, within MPMX19_04971 at 441.662 kb on + strand, within MPMX19_04971 at 441.662 kb on + strand, within MPMX19_04971 at 441.663 kb on - strand, within MPMX19_04971 at 441.663 kb on - strand, within MPMX19_04971 at 441.663 kb on - strand, within MPMX19_04971 at 441.663 kb on - strand, within MPMX19_04971 at 441.663 kb on - strand, within MPMX19_04971 at 441.663 kb on - strand, within MPMX19_04971 at 441.663 kb on - strand, within MPMX19_04971 at 441.663 kb on - strand, within MPMX19_04971 at 441.663 kb on - strand, within MPMX19_04971 at 441.956 kb on + strand, within MPMX19_04971 at 441.956 kb on + strand, within MPMX19_04971 at 441.956 kb on + strand, within MPMX19_04971 at 441.956 kb on + strand, within MPMX19_04971 at 441.956 kb on + strand, within MPMX19_04971 at 442.052 kb on + strand at 442.053 kb on - strand at 442.358 kb on + strand at 442.358 kb on + strand at 442.358 kb on + strand at 442.359 kb on - strand at 442.359 kb on - strand at 442.378 kb on + strand at 442.378 kb on + strand at 442.378 kb on + strand at 442.378 kb on + strand at 442.379 kb on - strand at 442.379 kb on - strand at 442.456 kb on + strand at 442.471 kb on + strand at 442.471 kb on + strand at 442.471 kb on + strand at 442.472 kb on - strand at 442.472 kb on - strand at 442.594 kb on + strand, within MPMX19_04972 at 442.594 kb on + strand, within MPMX19_04972 at 442.624 kb on - strand, within MPMX19_04972 at 442.624 kb on - strand, within MPMX19_04972 at 442.659 kb on + strand, within MPMX19_04972 at 442.660 kb on - strand, within MPMX19_04972 at 442.981 kb on - strand, within MPMX19_04972 at 443.049 kb on + strand, within MPMX19_04972 at 443.049 kb on + strand, within MPMX19_04972 at 443.049 kb on + strand, within MPMX19_04972 at 443.049 kb on + strand, within MPMX19_04972 at 443.050 kb on - strand, within MPMX19_04972
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 438,795 + MPMX19_04970 0.72 +1.6 438,795 + MPMX19_04970 0.72 -0.4 438,795 + MPMX19_04970 0.72 +1.3 438,795 + MPMX19_04970 0.72 -1.6 438,796 - MPMX19_04970 0.72 -1.4 438,796 - MPMX19_04970 0.72 -0.2 438,796 - MPMX19_04970 0.72 +0.4 438,796 - MPMX19_04970 0.72 -0.1 438,796 - MPMX19_04970 0.72 +0.6 438,796 - MPMX19_04970 0.72 -0.2 438,813 + MPMX19_04970 0.73 -0.6 438,814 - MPMX19_04970 0.73 -0.2 439,009 - MPMX19_04970 0.79 -0.4 439,009 - MPMX19_04970 0.79 -0.9 439,116 + MPMX19_04970 0.83 +0.4 439,116 + MPMX19_04970 0.83 -0.5 439,116 + MPMX19_04970 0.83 -0.9 439,117 - MPMX19_04970 0.83 -2.1 439,341 + -0.3 439,341 + +0.3 439,341 + -1.9 439,341 + -0.3 439,341 + +0.6 439,342 - -0.9 439,342 - -0.8 439,342 - +1.6 439,342 - -0.4 439,342 - -0.3 439,342 - +0.0 439,342 - -0.9 439,455 + +0.0 439,455 + +0.9 439,456 - -0.5 439,456 - -1.8 439,456 - -0.4 439,552 + -0.4 439,552 + -1.0 439,552 + +0.4 439,553 - +0.4 439,553 - -0.7 439,553 - -0.9 439,553 - +0.0 439,553 - +1.0 439,553 - +0.4 439,553 - +0.3 439,553 - +0.1 439,742 + -0.6 439,742 + -1.9 439,742 + -1.0 439,742 + -0.8 439,742 + -0.7 439,742 + +1.6 439,742 + +0.2 439,742 + +1.2 439,742 + -1.0 439,742 + +0.3 439,742 + -0.6 439,742 + +0.0 439,742 + -1.2 439,742 + +0.3 439,742 + -0.4 439,742 + -1.0 439,742 + -1.0 439,742 + +0.2 439,743 - +0.6 439,743 - -0.8 439,743 - -0.7 439,743 - -0.4 439,743 - -0.3 439,743 - +0.5 439,743 - +1.6 439,743 - -0.0 439,743 - -0.7 439,743 - -0.8 439,743 - +0.8 439,743 - -0.2 439,743 - -0.3 439,743 - +0.0 439,743 - -0.2 439,743 - -0.8 439,743 - -1.4 439,743 - -0.9 439,743 - -0.5 439,743 - +0.3 439,743 - -0.8 439,743 - +0.2 439,743 - +0.0 439,743 - -0.6 439,743 - -0.3 439,743 - -2.0 439,743 - -1.0 439,743 - +0.3 439,823 + -0.6 439,823 + +0.2 439,823 + +0.6 439,823 + -0.3 439,824 - +0.2 439,824 - -1.9 439,824 - -0.7 440,048 + MPMX19_04971 0.16 -1.0 440,049 - MPMX19_04971 0.16 -1.2 440,049 - MPMX19_04971 0.16 -0.4 440,222 + MPMX19_04971 0.23 -0.2 440,223 - MPMX19_04971 0.23 -1.9 440,223 - MPMX19_04971 0.23 -0.1 441,662 + MPMX19_04971 0.77 +0.9 441,662 + MPMX19_04971 0.77 +0.9 441,662 + MPMX19_04971 0.77 -0.1 441,662 + MPMX19_04971 0.77 +0.4 441,662 + MPMX19_04971 0.77 +0.5 441,662 + MPMX19_04971 0.77 -0.6 441,662 + MPMX19_04971 0.77 -2.4 441,663 - MPMX19_04971 0.77 +1.6 441,663 - MPMX19_04971 0.77 -0.4 441,663 - MPMX19_04971 0.77 -2.5 441,663 - MPMX19_04971 0.77 +0.9 441,663 - MPMX19_04971 0.77 -0.4 441,663 - MPMX19_04971 0.77 -0.5 441,663 - MPMX19_04971 0.77 -1.0 441,663 - MPMX19_04971 0.77 -1.5 441,663 - MPMX19_04971 0.77 +0.1 441,956 + MPMX19_04971 0.88 -0.6 441,956 + MPMX19_04971 0.88 -0.8 441,956 + MPMX19_04971 0.88 +0.8 441,956 + MPMX19_04971 0.88 -0.4 441,956 + MPMX19_04971 0.88 +0.3 442,052 + +0.2 442,053 - -0.6 442,358 + +1.0 442,358 + +0.0 442,358 + +0.8 442,359 - -1.1 442,359 - +1.7 442,378 + +1.7 442,378 + -2.8 442,378 + -1.2 442,378 + -1.7 442,379 - -3.2 442,379 - +1.5 442,456 + +0.0 442,471 + -1.2 442,471 + -0.4 442,471 + +0.0 442,472 - -0.4 442,472 - -1.2 442,594 + MPMX19_04972 0.15 -1.0 442,594 + MPMX19_04972 0.15 -0.7 442,624 - MPMX19_04972 0.17 -0.6 442,624 - MPMX19_04972 0.17 -1.6 442,659 + MPMX19_04972 0.20 -0.2 442,660 - MPMX19_04972 0.20 -0.6 442,981 - MPMX19_04972 0.44 -0.6 443,049 + MPMX19_04972 0.49 +0.1 443,049 + MPMX19_04972 0.49 -0.0 443,049 + MPMX19_04972 0.49 +0.8 443,049 + MPMX19_04972 0.49 -1.9 443,050 - MPMX19_04972 0.49 +0.3
Or see this region's nucleotide sequence