Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04868 and MPMX19_04869 are separated by 199 nucleotides MPMX19_04869 and MPMX19_04870 are separated by 132 nucleotides
MPMX19_04868: MPMX19_04868 - Protein YdeP, at 307,987 to 310,275
_04868
MPMX19_04869: MPMX19_04869 - DNA polymerase I, at 310,475 to 313,399
_04869
MPMX19_04870: MPMX19_04870 - Transcriptional regulatory protein OmpR, at 313,532 to 314,317
_04870
Position (kb) 310
311
312
313
314 Strain fitness (log2 ratio) -2
-1
0
1 at 309.514 kb on + strand, within MPMX19_04868 at 309.514 kb on + strand, within MPMX19_04868 at 309.514 kb on + strand, within MPMX19_04868 at 309.515 kb on - strand, within MPMX19_04868 at 309.515 kb on - strand, within MPMX19_04868 at 309.515 kb on - strand, within MPMX19_04868 at 309.515 kb on - strand, within MPMX19_04868 at 309.515 kb on - strand, within MPMX19_04868 at 309.515 kb on - strand, within MPMX19_04868 at 309.766 kb on + strand, within MPMX19_04868 at 309.766 kb on + strand, within MPMX19_04868 at 309.767 kb on - strand, within MPMX19_04868 at 309.767 kb on - strand, within MPMX19_04868 at 309.820 kb on + strand, within MPMX19_04868 at 309.820 kb on + strand, within MPMX19_04868 at 309.821 kb on - strand, within MPMX19_04868 at 309.821 kb on - strand, within MPMX19_04868 at 309.821 kb on - strand, within MPMX19_04868 at 309.979 kb on + strand, within MPMX19_04868 at 309.979 kb on + strand, within MPMX19_04868 at 309.979 kb on + strand, within MPMX19_04868 at 309.979 kb on + strand, within MPMX19_04868 at 309.979 kb on + strand, within MPMX19_04868 at 309.979 kb on + strand, within MPMX19_04868 at 309.979 kb on + strand, within MPMX19_04868 at 309.980 kb on - strand, within MPMX19_04868 at 309.980 kb on - strand, within MPMX19_04868 at 309.980 kb on - strand, within MPMX19_04868 at 309.980 kb on - strand, within MPMX19_04868 at 309.980 kb on - strand, within MPMX19_04868 at 309.980 kb on - strand, within MPMX19_04868 at 309.980 kb on - strand, within MPMX19_04868 at 309.980 kb on - strand, within MPMX19_04868 at 309.980 kb on - strand, within MPMX19_04868 at 309.985 kb on + strand, within MPMX19_04868 at 309.985 kb on + strand, within MPMX19_04868 at 309.985 kb on + strand, within MPMX19_04868 at 309.986 kb on - strand, within MPMX19_04868 at 310.177 kb on + strand at 310.177 kb on + strand at 310.177 kb on + strand at 310.177 kb on + strand at 310.178 kb on - strand at 310.180 kb on + strand at 310.180 kb on + strand at 310.181 kb on - strand at 310.213 kb on + strand at 310.213 kb on + strand at 310.214 kb on - strand at 310.273 kb on + strand at 310.273 kb on + strand at 310.274 kb on - strand at 310.274 kb on - strand at 310.274 kb on - strand at 310.386 kb on - strand at 310.386 kb on - strand at 310.386 kb on - strand at 310.386 kb on - strand at 310.386 kb on - strand at 310.386 kb on - strand at 310.386 kb on - strand at 310.791 kb on + strand, within MPMX19_04869 at 310.792 kb on - strand, within MPMX19_04869 at 310.792 kb on - strand, within MPMX19_04869 at 310.792 kb on - strand, within MPMX19_04869 at 310.792 kb on - strand, within MPMX19_04869 at 310.821 kb on + strand, within MPMX19_04869 at 310.822 kb on - strand, within MPMX19_04869 at 311.146 kb on - strand, within MPMX19_04869 at 311.166 kb on + strand, within MPMX19_04869 at 311.166 kb on + strand, within MPMX19_04869 at 311.343 kb on + strand, within MPMX19_04869 at 311.343 kb on + strand, within MPMX19_04869 at 311.343 kb on + strand, within MPMX19_04869 at 311.343 kb on + strand, within MPMX19_04869 at 311.343 kb on + strand, within MPMX19_04869 at 311.344 kb on - strand, within MPMX19_04869 at 311.344 kb on - strand, within MPMX19_04869 at 311.344 kb on - strand, within MPMX19_04869 at 311.344 kb on - strand, within MPMX19_04869 at 311.344 kb on - strand, within MPMX19_04869 at 311.344 kb on - strand, within MPMX19_04869 at 311.344 kb on - strand, within MPMX19_04869 at 311.344 kb on - strand, within MPMX19_04869 at 311.445 kb on + strand, within MPMX19_04869 at 311.446 kb on - strand, within MPMX19_04869 at 311.446 kb on - strand, within MPMX19_04869 at 311.860 kb on - strand, within MPMX19_04869 at 311.922 kb on + strand, within MPMX19_04869 at 311.922 kb on + strand, within MPMX19_04869 at 311.922 kb on + strand, within MPMX19_04869 at 311.923 kb on - strand, within MPMX19_04869 at 311.923 kb on - strand, within MPMX19_04869 at 311.923 kb on - strand, within MPMX19_04869 at 311.923 kb on - strand, within MPMX19_04869 at 312.309 kb on + strand, within MPMX19_04869 at 313.430 kb on + strand at 313.430 kb on + strand at 313.430 kb on + strand at 313.431 kb on - strand at 313.584 kb on + strand at 313.584 kb on + strand at 313.584 kb on + strand at 313.585 kb on - strand at 313.683 kb on + strand, within MPMX19_04870 at 313.683 kb on + strand, within MPMX19_04870 at 313.684 kb on - strand, within MPMX19_04870 at 313.684 kb on - strand, within MPMX19_04870 at 313.684 kb on - strand, within MPMX19_04870 at 313.684 kb on - strand, within MPMX19_04870 at 313.776 kb on + strand, within MPMX19_04870 at 313.776 kb on + strand, within MPMX19_04870 at 313.776 kb on + strand, within MPMX19_04870 at 313.776 kb on + strand, within MPMX19_04870 at 313.776 kb on + strand, within MPMX19_04870 at 313.776 kb on + strand, within MPMX19_04870 at 313.776 kb on + strand, within MPMX19_04870 at 313.776 kb on + strand, within MPMX19_04870 at 313.776 kb on + strand, within MPMX19_04870 at 313.777 kb on - strand, within MPMX19_04870 at 313.777 kb on - strand, within MPMX19_04870 at 313.777 kb on - strand, within MPMX19_04870 at 313.777 kb on - strand, within MPMX19_04870 at 313.777 kb on - strand, within MPMX19_04870 at 313.777 kb on - strand, within MPMX19_04870 at 313.777 kb on - strand, within MPMX19_04870 at 313.777 kb on - strand, within MPMX19_04870 at 313.822 kb on + strand, within MPMX19_04870 at 314.025 kb on + strand, within MPMX19_04870 at 314.025 kb on + strand, within MPMX19_04870 at 314.025 kb on + strand, within MPMX19_04870 at 314.025 kb on + strand, within MPMX19_04870 at 314.025 kb on + strand, within MPMX19_04870 at 314.025 kb on + strand, within MPMX19_04870 at 314.025 kb on + strand, within MPMX19_04870 at 314.025 kb on + strand, within MPMX19_04870 at 314.026 kb on - strand, within MPMX19_04870 at 314.026 kb on - strand, within MPMX19_04870 at 314.026 kb on - strand, within MPMX19_04870 at 314.026 kb on - strand, within MPMX19_04870 at 314.026 kb on - strand, within MPMX19_04870 at 314.026 kb on - strand, within MPMX19_04870 at 314.026 kb on - strand, within MPMX19_04870 at 314.026 kb on - strand, within MPMX19_04870 at 314.026 kb on - strand, within MPMX19_04870 at 314.026 kb on - strand, within MPMX19_04870 at 314.026 kb on - strand, within MPMX19_04870 at 314.026 kb on - strand, within MPMX19_04870 at 314.259 kb on + strand at 314.259 kb on + strand at 314.259 kb on + strand at 314.260 kb on - strand at 314.260 kb on - strand at 314.260 kb on - strand at 314.345 kb on + strand at 314.345 kb on + strand at 314.345 kb on + strand at 314.345 kb on + strand at 314.345 kb on + strand at 314.346 kb on - strand at 314.346 kb on - strand at 314.346 kb on - strand at 314.346 kb on - strand at 314.346 kb on - strand at 314.346 kb on - strand at 314.353 kb on + strand at 314.353 kb on + strand at 314.353 kb on + strand at 314.353 kb on + strand at 314.353 kb on + strand at 314.353 kb on + strand at 314.353 kb on + strand at 314.353 kb on + strand at 314.353 kb on + strand at 314.354 kb on - strand at 314.354 kb on - strand at 314.354 kb on - strand at 314.354 kb on - strand at 314.354 kb on - strand at 314.355 kb on + strand at 314.355 kb on + strand at 314.355 kb on + strand at 314.355 kb on + strand at 314.355 kb on + strand at 314.355 kb on + strand at 314.355 kb on + strand at 314.355 kb on + strand at 314.355 kb on + strand at 314.356 kb on - strand at 314.356 kb on - strand at 314.356 kb on - strand at 314.356 kb on - strand at 314.356 kb on - strand at 314.356 kb on - strand at 314.358 kb on + strand at 314.358 kb on + strand at 314.358 kb on + strand at 314.358 kb on + strand at 314.358 kb on + strand at 314.359 kb on - strand at 314.386 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 309,514 + MPMX19_04868 0.67 -0.9 309,514 + MPMX19_04868 0.67 +0.2 309,514 + MPMX19_04868 0.67 -0.5 309,515 - MPMX19_04868 0.67 -1.0 309,515 - MPMX19_04868 0.67 +1.2 309,515 - MPMX19_04868 0.67 -0.6 309,515 - MPMX19_04868 0.67 +0.9 309,515 - MPMX19_04868 0.67 -0.0 309,515 - MPMX19_04868 0.67 +0.9 309,766 + MPMX19_04868 0.78 -1.6 309,766 + MPMX19_04868 0.78 -0.9 309,767 - MPMX19_04868 0.78 +0.5 309,767 - MPMX19_04868 0.78 +0.9 309,820 + MPMX19_04868 0.80 -0.8 309,820 + MPMX19_04868 0.80 +1.0 309,821 - MPMX19_04868 0.80 -0.0 309,821 - MPMX19_04868 0.80 -0.9 309,821 - MPMX19_04868 0.80 -1.8 309,979 + MPMX19_04868 0.87 -1.2 309,979 + MPMX19_04868 0.87 -0.2 309,979 + MPMX19_04868 0.87 +1.1 309,979 + MPMX19_04868 0.87 -0.0 309,979 + MPMX19_04868 0.87 -2.0 309,979 + MPMX19_04868 0.87 -0.6 309,979 + MPMX19_04868 0.87 -0.1 309,980 - MPMX19_04868 0.87 +0.2 309,980 - MPMX19_04868 0.87 -0.1 309,980 - MPMX19_04868 0.87 +1.3 309,980 - MPMX19_04868 0.87 +0.6 309,980 - MPMX19_04868 0.87 +0.3 309,980 - MPMX19_04868 0.87 +0.3 309,980 - MPMX19_04868 0.87 +0.3 309,980 - MPMX19_04868 0.87 -0.0 309,980 - MPMX19_04868 0.87 -1.1 309,985 + MPMX19_04868 0.87 -1.2 309,985 + MPMX19_04868 0.87 -0.7 309,985 + MPMX19_04868 0.87 -1.0 309,986 - MPMX19_04868 0.87 -0.0 310,177 + -1.8 310,177 + +0.3 310,177 + +0.1 310,177 + +0.3 310,178 - -2.0 310,180 + -0.4 310,180 + -0.8 310,181 - -1.1 310,213 + +0.7 310,213 + +0.6 310,214 - -0.3 310,273 + +1.2 310,273 + -0.4 310,274 - +0.1 310,274 - +0.4 310,274 - +0.5 310,386 - -0.2 310,386 - +0.0 310,386 - +0.3 310,386 - +0.1 310,386 - +0.6 310,386 - +0.3 310,386 - -0.8 310,791 + MPMX19_04869 0.11 -0.4 310,792 - MPMX19_04869 0.11 -1.4 310,792 - MPMX19_04869 0.11 -0.8 310,792 - MPMX19_04869 0.11 -1.9 310,792 - MPMX19_04869 0.11 -0.8 310,821 + MPMX19_04869 0.12 -1.4 310,822 - MPMX19_04869 0.12 -2.2 311,146 - MPMX19_04869 0.23 +1.6 311,166 + MPMX19_04869 0.24 -0.8 311,166 + MPMX19_04869 0.24 -1.4 311,343 + MPMX19_04869 0.30 -0.0 311,343 + MPMX19_04869 0.30 -0.4 311,343 + MPMX19_04869 0.30 +0.8 311,343 + MPMX19_04869 0.30 +1.2 311,343 + MPMX19_04869 0.30 -2.0 311,344 - MPMX19_04869 0.30 -1.0 311,344 - MPMX19_04869 0.30 -0.0 311,344 - MPMX19_04869 0.30 -2.3 311,344 - MPMX19_04869 0.30 -1.0 311,344 - MPMX19_04869 0.30 -2.5 311,344 - MPMX19_04869 0.30 -1.0 311,344 - MPMX19_04869 0.30 -0.6 311,344 - MPMX19_04869 0.30 -0.0 311,445 + MPMX19_04869 0.33 -0.8 311,446 - MPMX19_04869 0.33 +0.6 311,446 - MPMX19_04869 0.33 +0.4 311,860 - MPMX19_04869 0.47 +1.3 311,922 + MPMX19_04869 0.49 -2.2 311,922 + MPMX19_04869 0.49 -0.2 311,922 + MPMX19_04869 0.49 -0.0 311,923 - MPMX19_04869 0.50 -0.4 311,923 - MPMX19_04869 0.50 -0.4 311,923 - MPMX19_04869 0.50 -0.4 311,923 - MPMX19_04869 0.50 +0.6 312,309 + MPMX19_04869 0.63 +0.7 313,430 + -0.7 313,430 + -0.5 313,430 + +0.9 313,431 - -0.9 313,584 + -1.4 313,584 + -0.6 313,584 + -0.3 313,585 - -1.4 313,683 + MPMX19_04870 0.19 +1.2 313,683 + MPMX19_04870 0.19 +0.1 313,684 - MPMX19_04870 0.19 -1.0 313,684 - MPMX19_04870 0.19 +0.8 313,684 - MPMX19_04870 0.19 +0.1 313,684 - MPMX19_04870 0.19 -0.2 313,776 + MPMX19_04870 0.31 -0.8 313,776 + MPMX19_04870 0.31 +0.3 313,776 + MPMX19_04870 0.31 +0.6 313,776 + MPMX19_04870 0.31 -1.6 313,776 + MPMX19_04870 0.31 -1.9 313,776 + MPMX19_04870 0.31 +0.5 313,776 + MPMX19_04870 0.31 +0.6 313,776 + MPMX19_04870 0.31 -0.4 313,776 + MPMX19_04870 0.31 +0.3 313,777 - MPMX19_04870 0.31 +1.6 313,777 - MPMX19_04870 0.31 -0.3 313,777 - MPMX19_04870 0.31 +0.7 313,777 - MPMX19_04870 0.31 -0.2 313,777 - MPMX19_04870 0.31 +1.1 313,777 - MPMX19_04870 0.31 +0.2 313,777 - MPMX19_04870 0.31 -0.2 313,777 - MPMX19_04870 0.31 -0.6 313,822 + MPMX19_04870 0.37 -0.2 314,025 + MPMX19_04870 0.63 -0.8 314,025 + MPMX19_04870 0.63 -0.7 314,025 + MPMX19_04870 0.63 -0.6 314,025 + MPMX19_04870 0.63 -0.7 314,025 + MPMX19_04870 0.63 -0.8 314,025 + MPMX19_04870 0.63 -1.7 314,025 + MPMX19_04870 0.63 +0.7 314,025 + MPMX19_04870 0.63 -0.0 314,026 - MPMX19_04870 0.63 +0.6 314,026 - MPMX19_04870 0.63 +0.1 314,026 - MPMX19_04870 0.63 -0.4 314,026 - MPMX19_04870 0.63 -1.1 314,026 - MPMX19_04870 0.63 +0.6 314,026 - MPMX19_04870 0.63 -1.8 314,026 - MPMX19_04870 0.63 -0.0 314,026 - MPMX19_04870 0.63 +0.3 314,026 - MPMX19_04870 0.63 +0.4 314,026 - MPMX19_04870 0.63 -1.0 314,026 - MPMX19_04870 0.63 +1.3 314,026 - MPMX19_04870 0.63 -0.4 314,259 + +0.6 314,259 + -0.0 314,259 + +0.3 314,260 - +1.6 314,260 - -0.8 314,260 - -0.0 314,345 + -0.2 314,345 + -0.1 314,345 + -0.4 314,345 + +0.2 314,345 + -0.2 314,346 - -1.9 314,346 - +0.1 314,346 - +0.5 314,346 - -0.5 314,346 - +0.2 314,346 - -0.0 314,353 + +0.6 314,353 + +0.2 314,353 + -0.7 314,353 + +0.8 314,353 + -0.1 314,353 + -0.4 314,353 + -0.9 314,353 + -0.7 314,353 + -0.3 314,354 - -0.2 314,354 - -1.0 314,354 - -0.7 314,354 - +1.1 314,354 - -0.6 314,355 + -1.0 314,355 + -0.2 314,355 + -0.2 314,355 + -0.0 314,355 + -0.7 314,355 + +0.6 314,355 + -0.2 314,355 + -1.6 314,355 + +0.5 314,356 - -0.3 314,356 - -1.1 314,356 - -1.4 314,356 - +0.3 314,356 - -0.5 314,356 - +0.8 314,358 + -0.5 314,358 + -1.1 314,358 + -0.5 314,358 + -0.4 314,358 + -1.2 314,359 - -2.6 314,386 + +1.3
Or see this region's nucleotide sequence