Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04791

Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04789 and MPMX19_04790 overlap by 4 nucleotidesMPMX19_04790 and MPMX19_04791 overlap by 8 nucleotidesMPMX19_04791 and MPMX19_04792 overlap by 4 nucleotidesMPMX19_04792 and MPMX19_04793 overlap by 4 nucleotides MPMX19_04789: MPMX19_04789 - hypothetical protein, at 187,237 to 188,124 _04789 MPMX19_04790: MPMX19_04790 - hypothetical protein, at 188,121 to 188,927 _04790 MPMX19_04791: MPMX19_04791 - 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial, at 188,920 to 189,663 _04791 MPMX19_04792: MPMX19_04792 - hypothetical protein, at 189,660 to 190,547 _04792 MPMX19_04793: MPMX19_04793 - D-inositol-3-phosphate glycosyltransferase, at 190,544 to 192,574 _04793 Position (kb) 188 189 190Strain fitness (log2 ratio) -2 -1 0 1 2at 187.966 kb on + strand, within MPMX19_04789at 187.966 kb on + strand, within MPMX19_04789at 187.967 kb on - strand, within MPMX19_04789at 187.967 kb on - strand, within MPMX19_04789at 187.967 kb on - strand, within MPMX19_04789at 187.967 kb on - strand, within MPMX19_04789at 187.976 kb on + strand, within MPMX19_04789at 187.976 kb on + strand, within MPMX19_04789at 187.977 kb on - strand, within MPMX19_04789at 187.977 kb on - strand, within MPMX19_04789at 188.470 kb on + strand, within MPMX19_04790at 188.470 kb on + strand, within MPMX19_04790at 188.470 kb on + strand, within MPMX19_04790at 188.470 kb on + strand, within MPMX19_04790at 188.470 kb on + strand, within MPMX19_04790at 188.470 kb on + strand, within MPMX19_04790at 188.471 kb on - strand, within MPMX19_04790at 188.471 kb on - strand, within MPMX19_04790at 188.471 kb on - strand, within MPMX19_04790at 188.471 kb on - strand, within MPMX19_04790at 188.812 kb on + strand, within MPMX19_04790at 188.812 kb on + strand, within MPMX19_04790at 188.812 kb on + strand, within MPMX19_04790at 188.812 kb on + strand, within MPMX19_04790at 188.812 kb on + strand, within MPMX19_04790at 188.812 kb on + strand, within MPMX19_04790at 188.812 kb on + strand, within MPMX19_04790at 188.812 kb on + strand, within MPMX19_04790at 188.812 kb on + strand, within MPMX19_04790at 188.812 kb on + strand, within MPMX19_04790at 188.812 kb on + strand, within MPMX19_04790at 188.812 kb on + strand, within MPMX19_04790at 188.812 kb on + strand, within MPMX19_04790at 188.812 kb on + strand, within MPMX19_04790at 188.812 kb on + strand, within MPMX19_04790at 188.812 kb on + strand, within MPMX19_04790at 188.812 kb on + strand, within MPMX19_04790at 188.812 kb on + strand, within MPMX19_04790at 188.812 kb on + strand, within MPMX19_04790at 188.812 kb on + strand, within MPMX19_04790at 188.812 kb on + strand, within MPMX19_04790at 188.812 kb on + strand, within MPMX19_04790at 188.812 kb on + strand, within MPMX19_04790at 188.812 kb on + strand, within MPMX19_04790at 188.812 kb on + strand, within MPMX19_04790at 188.813 kb on - strand, within MPMX19_04790at 188.813 kb on - strand, within MPMX19_04790at 188.813 kb on - strand, within MPMX19_04790at 188.813 kb on - strand, within MPMX19_04790at 188.813 kb on - strand, within MPMX19_04790at 188.813 kb on - strand, within MPMX19_04790at 188.813 kb on - strand, within MPMX19_04790at 188.813 kb on - strand, within MPMX19_04790at 188.813 kb on - strand, within MPMX19_04790at 188.813 kb on - strand, within MPMX19_04790at 188.813 kb on - strand, within MPMX19_04790at 188.813 kb on - strand, within MPMX19_04790at 188.813 kb on - strand, within MPMX19_04790at 189.155 kb on + strand, within MPMX19_04791at 189.156 kb on - strand, within MPMX19_04791at 189.512 kb on + strand, within MPMX19_04791at 189.512 kb on + strand, within MPMX19_04791at 189.512 kb on + strand, within MPMX19_04791at 189.512 kb on + strand, within MPMX19_04791at 189.513 kb on - strand, within MPMX19_04791at 189.513 kb on - strand, within MPMX19_04791at 189.638 kb on + strandat 189.722 kb on - strandat 189.916 kb on + strand, within MPMX19_04792at 189.916 kb on + strand, within MPMX19_04792at 189.917 kb on - strand, within MPMX19_04792at 189.917 kb on - strand, within MPMX19_04792at 189.917 kb on - strand, within MPMX19_04792at 189.955 kb on + strand, within MPMX19_04792at 189.955 kb on + strand, within MPMX19_04792at 189.955 kb on + strand, within MPMX19_04792at 190.333 kb on + strand, within MPMX19_04792at 190.333 kb on + strand, within MPMX19_04792at 190.334 kb on - strand, within MPMX19_04792at 190.334 kb on - strand, within MPMX19_04792at 190.529 kb on + strandat 190.530 kb on - strandat 190.530 kb on - strandat 190.530 kb on - strandat 190.530 kb on - strandat 190.594 kb on - strandat 190.594 kb on - strandat 190.594 kb on - strandat 190.594 kb on - strandat 190.594 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
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187,966 + MPMX19_04789 0.82 -0.2
187,966 + MPMX19_04789 0.82 +0.2
187,967 - MPMX19_04789 0.82 -1.0
187,967 - MPMX19_04789 0.82 -0.1
187,967 - MPMX19_04789 0.82 -1.0
187,967 - MPMX19_04789 0.82 +0.1
187,976 + MPMX19_04789 0.83 +0.2
187,976 + MPMX19_04789 0.83 +0.1
187,977 - MPMX19_04789 0.83 -1.9
187,977 - MPMX19_04789 0.83 -1.9
188,470 + MPMX19_04790 0.43 +1.9
188,470 + MPMX19_04790 0.43 -0.4
188,470 + MPMX19_04790 0.43 -1.4
188,470 + MPMX19_04790 0.43 -0.4
188,470 + MPMX19_04790 0.43 -0.4
188,470 + MPMX19_04790 0.43 -1.5
188,471 - MPMX19_04790 0.43 -0.2
188,471 - MPMX19_04790 0.43 +0.8
188,471 - MPMX19_04790 0.43 +0.0
188,471 - MPMX19_04790 0.43 +0.3
188,812 + MPMX19_04790 0.86 -0.6
188,812 + MPMX19_04790 0.86 +0.5
188,812 + MPMX19_04790 0.86 -0.8
188,812 + MPMX19_04790 0.86 -1.0
188,812 + MPMX19_04790 0.86 +0.7
188,812 + MPMX19_04790 0.86 -0.4
188,812 + MPMX19_04790 0.86 -1.3
188,812 + MPMX19_04790 0.86 -0.3
188,812 + MPMX19_04790 0.86 +0.2
188,812 + MPMX19_04790 0.86 +0.6
188,812 + MPMX19_04790 0.86 -0.8
188,812 + MPMX19_04790 0.86 -0.3
188,812 + MPMX19_04790 0.86 -1.1
188,812 + MPMX19_04790 0.86 +0.7
188,812 + MPMX19_04790 0.86 -1.7
188,812 + MPMX19_04790 0.86 -0.4
188,812 + MPMX19_04790 0.86 -1.6
188,812 + MPMX19_04790 0.86 -0.4
188,812 + MPMX19_04790 0.86 -0.6
188,812 + MPMX19_04790 0.86 -0.4
188,812 + MPMX19_04790 0.86 -0.6
188,812 + MPMX19_04790 0.86 +0.1
188,812 + MPMX19_04790 0.86 -0.4
188,812 + MPMX19_04790 0.86 -0.1
188,812 + MPMX19_04790 0.86 -1.0
188,813 - MPMX19_04790 0.86 +0.8
188,813 - MPMX19_04790 0.86 -2.0
188,813 - MPMX19_04790 0.86 -0.7
188,813 - MPMX19_04790 0.86 -0.4
188,813 - MPMX19_04790 0.86 -0.0
188,813 - MPMX19_04790 0.86 -0.9
188,813 - MPMX19_04790 0.86 -1.0
188,813 - MPMX19_04790 0.86 -0.3
188,813 - MPMX19_04790 0.86 +0.8
188,813 - MPMX19_04790 0.86 -0.0
188,813 - MPMX19_04790 0.86 +1.1
188,813 - MPMX19_04790 0.86 -1.4
188,813 - MPMX19_04790 0.86 +0.2
189,155 + MPMX19_04791 0.32 +0.4
189,156 - MPMX19_04791 0.32 -1.1
189,512 + MPMX19_04791 0.80 +0.3
189,512 + MPMX19_04791 0.80 -0.0
189,512 + MPMX19_04791 0.80 +0.8
189,512 + MPMX19_04791 0.80 -1.0
189,513 - MPMX19_04791 0.80 -0.4
189,513 - MPMX19_04791 0.80 -0.7
189,638 + -1.4
189,722 - +1.1
189,916 + MPMX19_04792 0.29 +0.8
189,916 + MPMX19_04792 0.29 +0.6
189,917 - MPMX19_04792 0.29 -1.0
189,917 - MPMX19_04792 0.29 -1.1
189,917 - MPMX19_04792 0.29 +1.3
189,955 + MPMX19_04792 0.33 -1.0
189,955 + MPMX19_04792 0.33 -0.8
189,955 + MPMX19_04792 0.33 +0.2
190,333 + MPMX19_04792 0.76 +1.6
190,333 + MPMX19_04792 0.76 -0.3
190,334 - MPMX19_04792 0.76 -0.4
190,334 - MPMX19_04792 0.76 -0.7
190,529 + -1.6
190,530 - -0.7
190,530 - +0.8
190,530 - -1.3
190,530 - -2.1
190,594 - -0.1
190,594 - +1.0
190,594 - -1.3
190,594 - -0.0
190,594 - +0.9

Or see this region's nucleotide sequence