Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04708 and MPMX19_04709 are separated by 114 nucleotides MPMX19_04709 and MPMX19_04710 are separated by 191 nucleotides MPMX19_04710 and MPMX19_04711 are separated by 41 nucleotides
MPMX19_04708: MPMX19_04708 - Sarcosine oxidase subunit beta, at 95,663 to 96,916
_04708
MPMX19_04709: MPMX19_04709 - HTH-type transcriptional regulator CdhR, at 97,031 to 98,044
_04709
MPMX19_04710: MPMX19_04710 - hypothetical protein, at 98,236 to 98,766
_04710
MPMX19_04711: MPMX19_04711 - Formyltetrahydrofolate deformylase, at 98,808 to 99,671
_04711
Position (kb) 97
98
99 Strain fitness (log2 ratio) -2
-1
0
1
2 at 96.066 kb on + strand, within MPMX19_04708 at 96.066 kb on + strand, within MPMX19_04708 at 96.066 kb on + strand, within MPMX19_04708 at 96.066 kb on + strand, within MPMX19_04708 at 96.066 kb on + strand, within MPMX19_04708 at 96.066 kb on + strand, within MPMX19_04708 at 96.067 kb on - strand, within MPMX19_04708 at 96.067 kb on - strand, within MPMX19_04708 at 96.144 kb on + strand, within MPMX19_04708 at 96.345 kb on + strand, within MPMX19_04708 at 96.346 kb on - strand, within MPMX19_04708 at 96.346 kb on - strand, within MPMX19_04708 at 96.346 kb on - strand, within MPMX19_04708 at 96.450 kb on + strand, within MPMX19_04708 at 96.450 kb on + strand, within MPMX19_04708 at 96.450 kb on + strand, within MPMX19_04708 at 96.451 kb on - strand, within MPMX19_04708 at 96.451 kb on - strand, within MPMX19_04708 at 96.451 kb on - strand, within MPMX19_04708 at 96.547 kb on + strand, within MPMX19_04708 at 96.547 kb on + strand, within MPMX19_04708 at 96.547 kb on + strand, within MPMX19_04708 at 96.547 kb on + strand, within MPMX19_04708 at 96.591 kb on + strand, within MPMX19_04708 at 96.591 kb on + strand, within MPMX19_04708 at 96.591 kb on + strand, within MPMX19_04708 at 96.591 kb on + strand, within MPMX19_04708 at 96.591 kb on + strand, within MPMX19_04708 at 96.591 kb on + strand, within MPMX19_04708 at 96.591 kb on + strand, within MPMX19_04708 at 96.591 kb on + strand, within MPMX19_04708 at 96.591 kb on + strand, within MPMX19_04708 at 96.591 kb on + strand, within MPMX19_04708 at 96.592 kb on - strand, within MPMX19_04708 at 96.592 kb on - strand, within MPMX19_04708 at 96.639 kb on + strand, within MPMX19_04708 at 96.639 kb on + strand, within MPMX19_04708 at 96.639 kb on + strand, within MPMX19_04708 at 96.660 kb on + strand, within MPMX19_04708 at 96.660 kb on + strand, within MPMX19_04708 at 96.660 kb on + strand, within MPMX19_04708 at 96.661 kb on - strand, within MPMX19_04708 at 96.661 kb on - strand, within MPMX19_04708 at 96.661 kb on - strand, within MPMX19_04708 at 96.661 kb on - strand, within MPMX19_04708 at 96.661 kb on - strand, within MPMX19_04708 at 96.661 kb on - strand, within MPMX19_04708 at 96.666 kb on + strand, within MPMX19_04708 at 96.667 kb on - strand, within MPMX19_04708 at 96.667 kb on - strand, within MPMX19_04708 at 96.667 kb on - strand, within MPMX19_04708 at 96.667 kb on - strand, within MPMX19_04708 at 96.667 kb on - strand, within MPMX19_04708 at 96.667 kb on - strand, within MPMX19_04708 at 96.768 kb on + strand, within MPMX19_04708 at 96.768 kb on + strand, within MPMX19_04708 at 96.768 kb on + strand, within MPMX19_04708 at 96.768 kb on + strand, within MPMX19_04708 at 96.769 kb on - strand, within MPMX19_04708 at 96.769 kb on - strand, within MPMX19_04708 at 96.769 kb on - strand, within MPMX19_04708 at 96.769 kb on - strand, within MPMX19_04708 at 96.771 kb on + strand, within MPMX19_04708 at 96.771 kb on + strand, within MPMX19_04708 at 96.771 kb on + strand, within MPMX19_04708 at 96.771 kb on + strand, within MPMX19_04708 at 96.771 kb on + strand, within MPMX19_04708 at 96.771 kb on + strand, within MPMX19_04708 at 96.771 kb on + strand, within MPMX19_04708 at 96.771 kb on + strand, within MPMX19_04708 at 96.772 kb on - strand, within MPMX19_04708 at 96.772 kb on - strand, within MPMX19_04708 at 96.772 kb on - strand, within MPMX19_04708 at 96.772 kb on - strand, within MPMX19_04708 at 96.772 kb on - strand, within MPMX19_04708 at 96.772 kb on - strand, within MPMX19_04708 at 96.772 kb on - strand, within MPMX19_04708 at 96.819 kb on + strand at 96.819 kb on + strand at 96.819 kb on + strand at 96.820 kb on - strand at 96.820 kb on - strand at 96.949 kb on - strand at 96.992 kb on + strand at 96.992 kb on + strand at 96.992 kb on + strand at 96.993 kb on - strand at 97.313 kb on + strand, within MPMX19_04709 at 97.313 kb on + strand, within MPMX19_04709 at 97.313 kb on + strand, within MPMX19_04709 at 97.313 kb on + strand, within MPMX19_04709 at 97.313 kb on + strand, within MPMX19_04709 at 97.313 kb on + strand, within MPMX19_04709 at 97.313 kb on + strand, within MPMX19_04709 at 97.313 kb on + strand, within MPMX19_04709 at 97.313 kb on + strand, within MPMX19_04709 at 97.313 kb on + strand, within MPMX19_04709 at 97.314 kb on - strand, within MPMX19_04709 at 97.314 kb on - strand, within MPMX19_04709 at 97.314 kb on - strand, within MPMX19_04709 at 97.314 kb on - strand, within MPMX19_04709 at 97.367 kb on + strand, within MPMX19_04709 at 97.367 kb on + strand, within MPMX19_04709 at 97.367 kb on + strand, within MPMX19_04709 at 97.368 kb on - strand, within MPMX19_04709 at 97.368 kb on - strand, within MPMX19_04709 at 97.368 kb on - strand, within MPMX19_04709 at 97.368 kb on - strand, within MPMX19_04709 at 97.423 kb on + strand, within MPMX19_04709 at 97.610 kb on + strand, within MPMX19_04709 at 97.610 kb on + strand, within MPMX19_04709 at 97.610 kb on + strand, within MPMX19_04709 at 97.610 kb on + strand, within MPMX19_04709 at 97.610 kb on + strand, within MPMX19_04709 at 97.611 kb on - strand, within MPMX19_04709 at 97.611 kb on - strand, within MPMX19_04709 at 97.611 kb on - strand, within MPMX19_04709 at 97.611 kb on - strand, within MPMX19_04709 at 97.611 kb on - strand, within MPMX19_04709 at 97.611 kb on - strand, within MPMX19_04709 at 97.883 kb on + strand, within MPMX19_04709 at 98.094 kb on + strand at 98.094 kb on + strand at 98.094 kb on + strand at 98.094 kb on + strand at 98.095 kb on - strand at 98.095 kb on - strand at 98.095 kb on - strand at 98.095 kb on - strand at 98.095 kb on - strand at 98.095 kb on - strand at 98.095 kb on - strand at 98.095 kb on - strand at 98.100 kb on + strand at 98.100 kb on + strand at 98.100 kb on + strand at 98.100 kb on + strand at 98.100 kb on + strand at 98.101 kb on - strand at 98.101 kb on - strand at 98.101 kb on - strand at 98.737 kb on + strand at 98.770 kb on + strand at 98.770 kb on + strand at 98.770 kb on + strand at 98.770 kb on + strand at 98.771 kb on - strand at 98.771 kb on - strand at 98.771 kb on - strand at 98.771 kb on - strand at 98.771 kb on - strand at 98.771 kb on - strand at 98.771 kb on - strand at 98.771 kb on - strand at 98.792 kb on - strand at 98.832 kb on + strand at 98.832 kb on + strand at 98.832 kb on + strand at 98.832 kb on + strand at 98.832 kb on + strand at 98.832 kb on + strand at 98.832 kb on + strand at 98.833 kb on - strand at 98.833 kb on - strand at 98.833 kb on - strand at 98.833 kb on - strand at 98.833 kb on - strand at 98.833 kb on - strand at 98.882 kb on + strand at 98.882 kb on + strand at 98.882 kb on + strand at 98.882 kb on + strand at 98.882 kb on + strand at 98.883 kb on - strand at 98.883 kb on - strand at 98.883 kb on - strand at 98.883 kb on - strand at 98.883 kb on - strand at 98.883 kb on - strand at 98.883 kb on - strand at 98.883 kb on - strand at 98.886 kb on + strand at 98.886 kb on + strand at 98.886 kb on + strand at 98.886 kb on + strand at 98.886 kb on + strand at 98.886 kb on + strand at 98.886 kb on + strand at 98.886 kb on + strand at 98.887 kb on - strand at 98.887 kb on - strand at 98.887 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 96,066 + MPMX19_04708 0.32 +0.6 96,066 + MPMX19_04708 0.32 +0.1 96,066 + MPMX19_04708 0.32 -0.6 96,066 + MPMX19_04708 0.32 +1.6 96,066 + MPMX19_04708 0.32 +0.1 96,066 + MPMX19_04708 0.32 -0.8 96,067 - MPMX19_04708 0.32 +0.1 96,067 - MPMX19_04708 0.32 +0.4 96,144 + MPMX19_04708 0.38 -1.2 96,345 + MPMX19_04708 0.54 -0.8 96,346 - MPMX19_04708 0.54 +0.5 96,346 - MPMX19_04708 0.54 +2.0 96,346 - MPMX19_04708 0.54 -0.8 96,450 + MPMX19_04708 0.63 +0.9 96,450 + MPMX19_04708 0.63 +0.2 96,450 + MPMX19_04708 0.63 -0.6 96,451 - MPMX19_04708 0.63 +0.4 96,451 - MPMX19_04708 0.63 -0.8 96,451 - MPMX19_04708 0.63 +0.3 96,547 + MPMX19_04708 0.70 +0.4 96,547 + MPMX19_04708 0.70 -0.1 96,547 + MPMX19_04708 0.70 -1.8 96,547 + MPMX19_04708 0.70 +0.1 96,591 + MPMX19_04708 0.74 -0.6 96,591 + MPMX19_04708 0.74 -1.1 96,591 + MPMX19_04708 0.74 -0.1 96,591 + MPMX19_04708 0.74 -0.3 96,591 + MPMX19_04708 0.74 -0.1 96,591 + MPMX19_04708 0.74 +0.1 96,591 + MPMX19_04708 0.74 -1.5 96,591 + MPMX19_04708 0.74 -0.3 96,591 + MPMX19_04708 0.74 -1.3 96,591 + MPMX19_04708 0.74 -1.1 96,592 - MPMX19_04708 0.74 -0.5 96,592 - MPMX19_04708 0.74 -0.2 96,639 + MPMX19_04708 0.78 +0.9 96,639 + MPMX19_04708 0.78 +0.3 96,639 + MPMX19_04708 0.78 -0.1 96,660 + MPMX19_04708 0.80 +0.8 96,660 + MPMX19_04708 0.80 -0.7 96,660 + MPMX19_04708 0.80 -0.2 96,661 - MPMX19_04708 0.80 +2.1 96,661 - MPMX19_04708 0.80 -1.1 96,661 - MPMX19_04708 0.80 +0.7 96,661 - MPMX19_04708 0.80 -0.3 96,661 - MPMX19_04708 0.80 +0.2 96,661 - MPMX19_04708 0.80 -0.1 96,666 + MPMX19_04708 0.80 -0.6 96,667 - MPMX19_04708 0.80 -0.1 96,667 - MPMX19_04708 0.80 -0.2 96,667 - MPMX19_04708 0.80 +0.1 96,667 - MPMX19_04708 0.80 +0.1 96,667 - MPMX19_04708 0.80 +0.0 96,667 - MPMX19_04708 0.80 -0.5 96,768 + MPMX19_04708 0.88 -2.5 96,768 + MPMX19_04708 0.88 -0.2 96,768 + MPMX19_04708 0.88 +0.8 96,768 + MPMX19_04708 0.88 -0.2 96,769 - MPMX19_04708 0.88 -0.2 96,769 - MPMX19_04708 0.88 -0.2 96,769 - MPMX19_04708 0.88 -1.1 96,769 - MPMX19_04708 0.88 -0.6 96,771 + MPMX19_04708 0.88 -0.4 96,771 + MPMX19_04708 0.88 -1.3 96,771 + MPMX19_04708 0.88 -2.3 96,771 + MPMX19_04708 0.88 -0.6 96,771 + MPMX19_04708 0.88 -0.8 96,771 + MPMX19_04708 0.88 -0.3 96,771 + MPMX19_04708 0.88 +1.8 96,771 + MPMX19_04708 0.88 +0.5 96,772 - MPMX19_04708 0.88 -1.9 96,772 - MPMX19_04708 0.88 -0.6 96,772 - MPMX19_04708 0.88 -0.2 96,772 - MPMX19_04708 0.88 +1.2 96,772 - MPMX19_04708 0.88 +0.1 96,772 - MPMX19_04708 0.88 -0.9 96,772 - MPMX19_04708 0.88 +0.1 96,819 + +0.6 96,819 + +0.2 96,819 + +1.2 96,820 - +0.5 96,820 - -1.1 96,949 - +0.7 96,992 + -0.8 96,992 + -0.5 96,992 + +0.3 96,993 - +0.8 97,313 + MPMX19_04709 0.28 -0.5 97,313 + MPMX19_04709 0.28 -0.3 97,313 + MPMX19_04709 0.28 -0.2 97,313 + MPMX19_04709 0.28 -1.3 97,313 + MPMX19_04709 0.28 +0.2 97,313 + MPMX19_04709 0.28 -0.6 97,313 + MPMX19_04709 0.28 -1.1 97,313 + MPMX19_04709 0.28 -1.4 97,313 + MPMX19_04709 0.28 -0.1 97,313 + MPMX19_04709 0.28 +0.7 97,314 - MPMX19_04709 0.28 -1.6 97,314 - MPMX19_04709 0.28 +0.2 97,314 - MPMX19_04709 0.28 -0.2 97,314 - MPMX19_04709 0.28 +0.5 97,367 + MPMX19_04709 0.33 -0.8 97,367 + MPMX19_04709 0.33 +0.0 97,367 + MPMX19_04709 0.33 -1.3 97,368 - MPMX19_04709 0.33 -1.5 97,368 - MPMX19_04709 0.33 -1.4 97,368 - MPMX19_04709 0.33 -0.3 97,368 - MPMX19_04709 0.33 +0.0 97,423 + MPMX19_04709 0.39 -1.6 97,610 + MPMX19_04709 0.57 +1.1 97,610 + MPMX19_04709 0.57 +0.4 97,610 + MPMX19_04709 0.57 -1.1 97,610 + MPMX19_04709 0.57 +1.3 97,610 + MPMX19_04709 0.57 -0.2 97,611 - MPMX19_04709 0.57 -0.5 97,611 - MPMX19_04709 0.57 -0.4 97,611 - MPMX19_04709 0.57 -1.9 97,611 - MPMX19_04709 0.57 -1.6 97,611 - MPMX19_04709 0.57 -0.5 97,611 - MPMX19_04709 0.57 -1.8 97,883 + MPMX19_04709 0.84 +0.1 98,094 + -1.1 98,094 + +0.5 98,094 + -0.6 98,094 + -1.2 98,095 - +0.1 98,095 - -1.3 98,095 - +1.0 98,095 - -0.5 98,095 - +0.5 98,095 - -1.3 98,095 - -0.5 98,095 - +0.4 98,100 + -0.6 98,100 + -1.2 98,100 + +0.4 98,100 + -1.3 98,100 + -1.5 98,101 - -1.3 98,101 - -0.1 98,101 - -1.0 98,737 + -1.3 98,770 + +0.8 98,770 + -0.3 98,770 + +0.7 98,770 + -0.7 98,771 - +0.4 98,771 - -0.7 98,771 - -0.3 98,771 - -1.8 98,771 - -1.1 98,771 - -0.6 98,771 - +1.9 98,771 - -0.9 98,792 - -1.0 98,832 + +1.1 98,832 + +0.4 98,832 + -0.1 98,832 + +0.4 98,832 + +0.3 98,832 + -0.2 98,832 + +1.0 98,833 - +0.3 98,833 - +1.2 98,833 - +0.0 98,833 - -0.4 98,833 - -0.5 98,833 - +0.7 98,882 + -0.3 98,882 + -0.1 98,882 + -0.6 98,882 + +0.2 98,882 + +0.5 98,883 - +0.5 98,883 - -1.6 98,883 - +0.8 98,883 - +0.2 98,883 - -1.1 98,883 - -0.8 98,883 - +0.8 98,883 - +0.6 98,886 + +0.2 98,886 + -0.3 98,886 + +0.7 98,886 + -0.2 98,886 + +0.2 98,886 + +1.1 98,886 + -1.1 98,886 + +0.7 98,887 - -0.1 98,887 - -1.5 98,887 - +0.0
Or see this region's nucleotide sequence