Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04686

Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_04685 and MPMX19_04686 are separated by 37 nucleotidesMPMX19_04686 and MPMX19_04687 are separated by 42 nucleotides MPMX19_04685: MPMX19_04685 - D-hydantoinase, at 70,766 to 72,202 _04685 MPMX19_04686: MPMX19_04686 - Maleate isomerase, at 72,240 to 72,986 _04686 MPMX19_04687: MPMX19_04687 - Atrazine chlorohydrolase, at 73,029 to 74,363 _04687 Position (kb) 72 73Strain fitness (log2 ratio) -2 -1 0 1 2at 71.400 kb on + strand, within MPMX19_04685at 71.400 kb on + strand, within MPMX19_04685at 71.400 kb on + strand, within MPMX19_04685at 71.400 kb on + strand, within MPMX19_04685at 71.400 kb on + strand, within MPMX19_04685at 71.400 kb on + strand, within MPMX19_04685at 71.400 kb on + strand, within MPMX19_04685at 71.401 kb on - strand, within MPMX19_04685at 71.401 kb on - strand, within MPMX19_04685at 71.401 kb on - strand, within MPMX19_04685at 71.421 kb on + strand, within MPMX19_04685at 71.421 kb on + strand, within MPMX19_04685at 71.422 kb on - strand, within MPMX19_04685at 71.422 kb on - strand, within MPMX19_04685at 71.422 kb on - strand, within MPMX19_04685at 71.422 kb on - strand, within MPMX19_04685at 71.422 kb on - strand, within MPMX19_04685at 71.422 kb on - strand, within MPMX19_04685at 71.422 kb on - strand, within MPMX19_04685at 71.733 kb on + strand, within MPMX19_04685at 71.733 kb on + strand, within MPMX19_04685at 71.733 kb on + strand, within MPMX19_04685at 71.733 kb on + strand, within MPMX19_04685at 71.733 kb on + strand, within MPMX19_04685at 71.733 kb on + strand, within MPMX19_04685at 71.733 kb on + strand, within MPMX19_04685at 71.733 kb on + strand, within MPMX19_04685at 71.733 kb on + strand, within MPMX19_04685at 71.733 kb on + strand, within MPMX19_04685at 71.733 kb on + strand, within MPMX19_04685at 71.733 kb on + strand, within MPMX19_04685at 71.733 kb on + strand, within MPMX19_04685at 71.733 kb on + strand, within MPMX19_04685at 71.733 kb on + strand, within MPMX19_04685at 71.733 kb on + strand, within MPMX19_04685at 71.733 kb on + strand, within MPMX19_04685at 71.733 kb on + strand, within MPMX19_04685at 71.734 kb on - strand, within MPMX19_04685at 71.734 kb on - strand, within MPMX19_04685at 71.734 kb on - strand, within MPMX19_04685at 71.734 kb on - strand, within MPMX19_04685at 71.734 kb on - strand, within MPMX19_04685at 71.734 kb on - strand, within MPMX19_04685at 71.734 kb on - strand, within MPMX19_04685at 71.742 kb on + strand, within MPMX19_04685at 71.742 kb on + strand, within MPMX19_04685at 71.742 kb on + strand, within MPMX19_04685at 71.742 kb on + strand, within MPMX19_04685at 71.742 kb on + strand, within MPMX19_04685at 71.742 kb on + strand, within MPMX19_04685at 71.742 kb on + strand, within MPMX19_04685at 71.742 kb on + strand, within MPMX19_04685at 71.743 kb on - strand, within MPMX19_04685at 71.743 kb on - strand, within MPMX19_04685at 71.743 kb on - strand, within MPMX19_04685at 71.743 kb on - strand, within MPMX19_04685at 71.743 kb on - strand, within MPMX19_04685at 71.743 kb on - strand, within MPMX19_04685at 71.743 kb on - strand, within MPMX19_04685at 71.743 kb on - strand, within MPMX19_04685at 71.743 kb on - strand, within MPMX19_04685at 71.760 kb on + strand, within MPMX19_04685at 71.760 kb on + strand, within MPMX19_04685at 71.761 kb on - strand, within MPMX19_04685at 71.761 kb on - strand, within MPMX19_04685at 71.838 kb on + strand, within MPMX19_04685at 71.838 kb on + strand, within MPMX19_04685at 71.838 kb on + strand, within MPMX19_04685at 71.838 kb on + strand, within MPMX19_04685at 71.839 kb on - strand, within MPMX19_04685at 71.839 kb on - strand, within MPMX19_04685at 71.839 kb on - strand, within MPMX19_04685at 71.839 kb on - strand, within MPMX19_04685at 71.874 kb on + strand, within MPMX19_04685at 71.875 kb on - strand, within MPMX19_04685at 72.343 kb on + strand, within MPMX19_04686at 72.550 kb on + strand, within MPMX19_04686at 72.550 kb on + strand, within MPMX19_04686at 72.550 kb on + strand, within MPMX19_04686at 72.550 kb on + strand, within MPMX19_04686at 72.550 kb on + strand, within MPMX19_04686at 72.550 kb on + strand, within MPMX19_04686at 72.550 kb on + strand, within MPMX19_04686at 72.550 kb on + strand, within MPMX19_04686at 72.551 kb on - strand, within MPMX19_04686at 72.551 kb on - strand, within MPMX19_04686at 72.551 kb on - strand, within MPMX19_04686at 72.551 kb on - strand, within MPMX19_04686at 72.551 kb on - strand, within MPMX19_04686at 72.551 kb on - strand, within MPMX19_04686at 72.551 kb on - strand, within MPMX19_04686at 72.551 kb on - strand, within MPMX19_04686at 72.551 kb on - strand, within MPMX19_04686at 72.586 kb on + strand, within MPMX19_04686at 72.586 kb on + strand, within MPMX19_04686at 72.586 kb on + strand, within MPMX19_04686at 72.586 kb on + strand, within MPMX19_04686at 72.587 kb on - strand, within MPMX19_04686at 72.997 kb on + strandat 72.997 kb on + strandat 72.998 kb on - strandat 73.030 kb on + strandat 73.030 kb on + strandat 73.030 kb on + strandat 73.030 kb on + strandat 73.031 kb on - strandat 73.031 kb on - strandat 73.031 kb on - strandat 73.564 kb on + strand, within MPMX19_04687at 73.565 kb on - strand, within MPMX19_04687at 73.565 kb on - strand, within MPMX19_04687at 73.565 kb on - strand, within MPMX19_04687at 73.565 kb on - strand, within MPMX19_04687

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
remove
71,400 + MPMX19_04685 0.44 -0.3
71,400 + MPMX19_04685 0.44 -2.1
71,400 + MPMX19_04685 0.44 -2.1
71,400 + MPMX19_04685 0.44 -0.7
71,400 + MPMX19_04685 0.44 -0.3
71,400 + MPMX19_04685 0.44 +0.8
71,400 + MPMX19_04685 0.44 +0.5
71,401 - MPMX19_04685 0.44 -0.6
71,401 - MPMX19_04685 0.44 -0.3
71,401 - MPMX19_04685 0.44 -0.1
71,421 + MPMX19_04685 0.46 -0.4
71,421 + MPMX19_04685 0.46 -0.1
71,422 - MPMX19_04685 0.46 +1.0
71,422 - MPMX19_04685 0.46 +0.2
71,422 - MPMX19_04685 0.46 +0.3
71,422 - MPMX19_04685 0.46 +0.3
71,422 - MPMX19_04685 0.46 -1.8
71,422 - MPMX19_04685 0.46 -1.5
71,422 - MPMX19_04685 0.46 +0.3
71,733 + MPMX19_04685 0.67 -0.8
71,733 + MPMX19_04685 0.67 -1.3
71,733 + MPMX19_04685 0.67 +0.1
71,733 + MPMX19_04685 0.67 -1.4
71,733 + MPMX19_04685 0.67 -0.2
71,733 + MPMX19_04685 0.67 -2.1
71,733 + MPMX19_04685 0.67 -0.5
71,733 + MPMX19_04685 0.67 -0.8
71,733 + MPMX19_04685 0.67 -2.3
71,733 + MPMX19_04685 0.67 +0.3
71,733 + MPMX19_04685 0.67 -1.6
71,733 + MPMX19_04685 0.67 +0.1
71,733 + MPMX19_04685 0.67 -1.6
71,733 + MPMX19_04685 0.67 -1.3
71,733 + MPMX19_04685 0.67 -0.5
71,733 + MPMX19_04685 0.67 -0.2
71,733 + MPMX19_04685 0.67 -1.1
71,733 + MPMX19_04685 0.67 +0.9
71,734 - MPMX19_04685 0.67 +0.5
71,734 - MPMX19_04685 0.67 -1.5
71,734 - MPMX19_04685 0.67 -0.5
71,734 - MPMX19_04685 0.67 -0.6
71,734 - MPMX19_04685 0.67 -1.9
71,734 - MPMX19_04685 0.67 -1.6
71,734 - MPMX19_04685 0.67 +0.2
71,742 + MPMX19_04685 0.68 +1.0
71,742 + MPMX19_04685 0.68 -0.6
71,742 + MPMX19_04685 0.68 -1.1
71,742 + MPMX19_04685 0.68 -0.8
71,742 + MPMX19_04685 0.68 -1.1
71,742 + MPMX19_04685 0.68 -0.5
71,742 + MPMX19_04685 0.68 +0.5
71,742 + MPMX19_04685 0.68 -0.3
71,743 - MPMX19_04685 0.68 +0.6
71,743 - MPMX19_04685 0.68 +0.4
71,743 - MPMX19_04685 0.68 -0.3
71,743 - MPMX19_04685 0.68 -0.1
71,743 - MPMX19_04685 0.68 -1.1
71,743 - MPMX19_04685 0.68 -0.9
71,743 - MPMX19_04685 0.68 -1.1
71,743 - MPMX19_04685 0.68 -1.5
71,743 - MPMX19_04685 0.68 -1.8
71,760 + MPMX19_04685 0.69 -0.7
71,760 + MPMX19_04685 0.69 +0.1
71,761 - MPMX19_04685 0.69 -1.2
71,761 - MPMX19_04685 0.69 -0.1
71,838 + MPMX19_04685 0.75 +0.3
71,838 + MPMX19_04685 0.75 -0.1
71,838 + MPMX19_04685 0.75 -0.5
71,838 + MPMX19_04685 0.75 +0.4
71,839 - MPMX19_04685 0.75 +0.5
71,839 - MPMX19_04685 0.75 -1.4
71,839 - MPMX19_04685 0.75 +1.4
71,839 - MPMX19_04685 0.75 +1.3
71,874 + MPMX19_04685 0.77 +0.9
71,875 - MPMX19_04685 0.77 -1.5
72,343 + MPMX19_04686 0.14 -1.0
72,550 + MPMX19_04686 0.41 -1.0
72,550 + MPMX19_04686 0.41 -0.5
72,550 + MPMX19_04686 0.41 -0.8
72,550 + MPMX19_04686 0.41 +0.8
72,550 + MPMX19_04686 0.41 -0.4
72,550 + MPMX19_04686 0.41 -0.1
72,550 + MPMX19_04686 0.41 -1.1
72,550 + MPMX19_04686 0.41 -1.2
72,551 - MPMX19_04686 0.42 +0.7
72,551 - MPMX19_04686 0.42 +1.1
72,551 - MPMX19_04686 0.42 +0.9
72,551 - MPMX19_04686 0.42 -0.3
72,551 - MPMX19_04686 0.42 -0.4
72,551 - MPMX19_04686 0.42 -1.3
72,551 - MPMX19_04686 0.42 -0.8
72,551 - MPMX19_04686 0.42 -0.1
72,551 - MPMX19_04686 0.42 +0.8
72,586 + MPMX19_04686 0.46 +1.9
72,586 + MPMX19_04686 0.46 +0.4
72,586 + MPMX19_04686 0.46 +1.1
72,586 + MPMX19_04686 0.46 -0.3
72,587 - MPMX19_04686 0.46 +0.3
72,997 + -1.1
72,997 + +0.1
72,998 - -1.1
73,030 + +0.0
73,030 + -0.9
73,030 + -0.5
73,030 + -0.5
73,031 - -0.6
73,031 - -1.8
73,031 - +0.5
73,564 + MPMX19_04687 0.40 +0.2
73,565 - MPMX19_04687 0.40 -0.9
73,565 - MPMX19_04687 0.40 +1.5
73,565 - MPMX19_04687 0.40 +0.8
73,565 - MPMX19_04687 0.40 -0.3

Or see this region's nucleotide sequence