Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04675 and MPMX19_04676 are separated by 36 nucleotides MPMX19_04676 and MPMX19_04677 are separated by 204 nucleotides
MPMX19_04675: MPMX19_04675 - HTH-type transcriptional regulator PgrR, at 60,514 to 61,407
_04675
MPMX19_04676: MPMX19_04676 - Acylamidase, at 61,444 to 62,850
_04676
MPMX19_04677: MPMX19_04677 - Sulfate/thiosulfate import ATP-binding protein CysA, at 63,055 to 64,173
_04677
Position (kb) 61
62
63 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 60.444 kb on - strand at 60.444 kb on - strand at 60.472 kb on + strand at 60.480 kb on - strand at 60.496 kb on + strand at 60.496 kb on + strand at 60.496 kb on + strand at 60.496 kb on + strand at 60.804 kb on + strand, within MPMX19_04675 at 60.804 kb on + strand, within MPMX19_04675 at 60.805 kb on - strand, within MPMX19_04675 at 60.871 kb on + strand, within MPMX19_04675 at 60.872 kb on - strand, within MPMX19_04675 at 61.033 kb on + strand, within MPMX19_04675 at 61.033 kb on + strand, within MPMX19_04675 at 61.033 kb on + strand, within MPMX19_04675 at 61.033 kb on + strand, within MPMX19_04675 at 61.034 kb on - strand, within MPMX19_04675 at 61.034 kb on - strand, within MPMX19_04675 at 61.034 kb on - strand, within MPMX19_04675 at 61.111 kb on + strand, within MPMX19_04675 at 61.111 kb on + strand, within MPMX19_04675 at 61.112 kb on - strand, within MPMX19_04675 at 61.112 kb on - strand, within MPMX19_04675 at 61.112 kb on - strand, within MPMX19_04675 at 61.112 kb on - strand, within MPMX19_04675 at 61.121 kb on + strand, within MPMX19_04675 at 61.122 kb on - strand, within MPMX19_04675 at 61.122 kb on - strand, within MPMX19_04675 at 61.122 kb on - strand, within MPMX19_04675 at 61.240 kb on + strand, within MPMX19_04675 at 61.240 kb on + strand, within MPMX19_04675 at 61.240 kb on + strand, within MPMX19_04675 at 61.240 kb on + strand, within MPMX19_04675 at 61.240 kb on + strand, within MPMX19_04675 at 61.240 kb on + strand, within MPMX19_04675 at 61.240 kb on + strand, within MPMX19_04675 at 61.240 kb on + strand, within MPMX19_04675 at 61.240 kb on + strand, within MPMX19_04675 at 61.241 kb on - strand, within MPMX19_04675 at 61.241 kb on - strand, within MPMX19_04675 at 61.241 kb on - strand, within MPMX19_04675 at 61.241 kb on - strand, within MPMX19_04675 at 61.315 kb on + strand, within MPMX19_04675 at 61.316 kb on - strand, within MPMX19_04675 at 61.327 kb on + strand at 61.327 kb on + strand at 61.327 kb on + strand at 61.327 kb on + strand at 61.327 kb on + strand at 61.328 kb on - strand at 61.328 kb on - strand at 61.328 kb on - strand at 61.336 kb on + strand at 61.336 kb on + strand at 61.336 kb on + strand at 61.336 kb on + strand at 61.336 kb on + strand at 61.337 kb on - strand at 61.337 kb on - strand at 61.337 kb on - strand at 61.337 kb on - strand at 61.337 kb on - strand at 61.337 kb on - strand at 61.339 kb on + strand at 61.339 kb on + strand at 61.339 kb on + strand at 61.728 kb on + strand, within MPMX19_04676 at 61.763 kb on + strand, within MPMX19_04676 at 61.764 kb on - strand, within MPMX19_04676 at 61.764 kb on - strand, within MPMX19_04676 at 61.764 kb on - strand, within MPMX19_04676 at 61.764 kb on - strand, within MPMX19_04676 at 61.764 kb on - strand, within MPMX19_04676 at 61.796 kb on + strand, within MPMX19_04676 at 61.796 kb on + strand, within MPMX19_04676 at 61.796 kb on + strand, within MPMX19_04676 at 61.796 kb on + strand, within MPMX19_04676 at 61.796 kb on + strand, within MPMX19_04676 at 61.797 kb on - strand, within MPMX19_04676 at 61.797 kb on - strand, within MPMX19_04676 at 61.797 kb on - strand, within MPMX19_04676 at 61.797 kb on - strand, within MPMX19_04676 at 61.797 kb on - strand, within MPMX19_04676 at 61.797 kb on - strand, within MPMX19_04676 at 61.797 kb on - strand, within MPMX19_04676 at 61.797 kb on - strand, within MPMX19_04676 at 62.208 kb on + strand, within MPMX19_04676 at 62.208 kb on + strand, within MPMX19_04676 at 62.209 kb on - strand, within MPMX19_04676 at 62.209 kb on - strand, within MPMX19_04676 at 62.547 kb on - strand, within MPMX19_04676 at 62.561 kb on + strand, within MPMX19_04676 at 62.561 kb on + strand, within MPMX19_04676 at 62.561 kb on + strand, within MPMX19_04676 at 62.561 kb on + strand, within MPMX19_04676 at 62.561 kb on + strand, within MPMX19_04676 at 62.561 kb on + strand, within MPMX19_04676 at 62.562 kb on - strand, within MPMX19_04676 at 62.562 kb on - strand, within MPMX19_04676 at 62.562 kb on - strand, within MPMX19_04676 at 62.562 kb on - strand, within MPMX19_04676 at 62.562 kb on - strand, within MPMX19_04676 at 62.562 kb on - strand, within MPMX19_04676 at 62.562 kb on - strand, within MPMX19_04676 at 62.562 kb on - strand, within MPMX19_04676 at 62.562 kb on - strand, within MPMX19_04676 at 62.886 kb on + strand at 62.886 kb on + strand at 62.886 kb on + strand at 62.887 kb on - strand at 62.960 kb on + strand at 63.130 kb on + strand at 63.130 kb on + strand at 63.159 kb on + strand at 63.159 kb on + strand at 63.343 kb on + strand, within MPMX19_04677 at 63.343 kb on + strand, within MPMX19_04677 at 63.343 kb on + strand, within MPMX19_04677 at 63.343 kb on + strand, within MPMX19_04677 at 63.343 kb on + strand, within MPMX19_04677 at 63.343 kb on + strand, within MPMX19_04677 at 63.343 kb on + strand, within MPMX19_04677 at 63.343 kb on + strand, within MPMX19_04677 at 63.344 kb on - strand, within MPMX19_04677 at 63.344 kb on - strand, within MPMX19_04677 at 63.344 kb on - strand, within MPMX19_04677 at 63.385 kb on + strand, within MPMX19_04677 at 63.386 kb on - strand, within MPMX19_04677 at 63.386 kb on - strand, within MPMX19_04677 at 63.386 kb on - strand, within MPMX19_04677
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 60,444 - -0.2 60,444 - -1.8 60,472 + -1.6 60,480 - -1.6 60,496 + -0.5 60,496 + +0.2 60,496 + +0.2 60,496 + -1.6 60,804 + MPMX19_04675 0.32 -1.6 60,804 + MPMX19_04675 0.32 +0.9 60,805 - MPMX19_04675 0.33 -0.5 60,871 + MPMX19_04675 0.40 -0.5 60,872 - MPMX19_04675 0.40 +0.9 61,033 + MPMX19_04675 0.58 -0.5 61,033 + MPMX19_04675 0.58 -0.7 61,033 + MPMX19_04675 0.58 -0.3 61,033 + MPMX19_04675 0.58 +0.0 61,034 - MPMX19_04675 0.58 -0.2 61,034 - MPMX19_04675 0.58 +1.5 61,034 - MPMX19_04675 0.58 -1.6 61,111 + MPMX19_04675 0.67 -0.5 61,111 + MPMX19_04675 0.67 -0.6 61,112 - MPMX19_04675 0.67 -0.2 61,112 - MPMX19_04675 0.67 -0.9 61,112 - MPMX19_04675 0.67 -0.6 61,112 - MPMX19_04675 0.67 +0.7 61,121 + MPMX19_04675 0.68 +0.9 61,122 - MPMX19_04675 0.68 +0.2 61,122 - MPMX19_04675 0.68 +1.1 61,122 - MPMX19_04675 0.68 -2.7 61,240 + MPMX19_04675 0.81 -1.8 61,240 + MPMX19_04675 0.81 -0.7 61,240 + MPMX19_04675 0.81 +0.2 61,240 + MPMX19_04675 0.81 +0.9 61,240 + MPMX19_04675 0.81 +0.2 61,240 + MPMX19_04675 0.81 -1.2 61,240 + MPMX19_04675 0.81 +0.4 61,240 + MPMX19_04675 0.81 -0.5 61,240 + MPMX19_04675 0.81 -1.9 61,241 - MPMX19_04675 0.81 +0.3 61,241 - MPMX19_04675 0.81 -0.5 61,241 - MPMX19_04675 0.81 -0.8 61,241 - MPMX19_04675 0.81 -1.3 61,315 + MPMX19_04675 0.90 -1.1 61,316 - MPMX19_04675 0.90 +0.2 61,327 + -0.5 61,327 + -0.2 61,327 + +0.5 61,327 + -0.7 61,327 + -0.5 61,328 - +0.2 61,328 - +1.3 61,328 - -1.1 61,336 + +0.5 61,336 + -0.1 61,336 + -0.5 61,336 + -0.8 61,336 + -0.3 61,337 - +0.1 61,337 - -0.5 61,337 - -0.1 61,337 - -0.3 61,337 - +0.3 61,337 - +0.2 61,339 + +0.8 61,339 + -0.5 61,339 + -1.8 61,728 + MPMX19_04676 0.20 -0.7 61,763 + MPMX19_04676 0.23 -0.1 61,764 - MPMX19_04676 0.23 -1.9 61,764 - MPMX19_04676 0.23 -2.8 61,764 - MPMX19_04676 0.23 -0.4 61,764 - MPMX19_04676 0.23 -1.1 61,764 - MPMX19_04676 0.23 -1.1 61,796 + MPMX19_04676 0.25 -0.6 61,796 + MPMX19_04676 0.25 -0.1 61,796 + MPMX19_04676 0.25 -0.9 61,796 + MPMX19_04676 0.25 -0.1 61,796 + MPMX19_04676 0.25 -0.0 61,797 - MPMX19_04676 0.25 -0.3 61,797 - MPMX19_04676 0.25 +0.7 61,797 - MPMX19_04676 0.25 -1.0 61,797 - MPMX19_04676 0.25 -2.2 61,797 - MPMX19_04676 0.25 -0.6 61,797 - MPMX19_04676 0.25 -0.1 61,797 - MPMX19_04676 0.25 -0.1 61,797 - MPMX19_04676 0.25 -2.7 62,208 + MPMX19_04676 0.54 -0.1 62,208 + MPMX19_04676 0.54 -0.9 62,209 - MPMX19_04676 0.54 -0.7 62,209 - MPMX19_04676 0.54 +0.7 62,547 - MPMX19_04676 0.78 -0.1 62,561 + MPMX19_04676 0.79 -0.6 62,561 + MPMX19_04676 0.79 -0.1 62,561 + MPMX19_04676 0.79 -0.9 62,561 + MPMX19_04676 0.79 -0.1 62,561 + MPMX19_04676 0.79 +0.2 62,561 + MPMX19_04676 0.79 -0.4 62,562 - MPMX19_04676 0.79 +0.3 62,562 - MPMX19_04676 0.79 -1.8 62,562 - MPMX19_04676 0.79 -1.6 62,562 - MPMX19_04676 0.79 -0.2 62,562 - MPMX19_04676 0.79 +1.2 62,562 - MPMX19_04676 0.79 -2.3 62,562 - MPMX19_04676 0.79 -0.3 62,562 - MPMX19_04676 0.79 -0.6 62,562 - MPMX19_04676 0.79 -1.5 62,886 + -0.8 62,886 + -0.3 62,886 + +0.2 62,887 - +0.4 62,960 + -0.7 63,130 + +1.0 63,130 + +0.8 63,159 + +0.3 63,159 + -0.2 63,343 + MPMX19_04677 0.26 -0.3 63,343 + MPMX19_04677 0.26 +0.1 63,343 + MPMX19_04677 0.26 -1.3 63,343 + MPMX19_04677 0.26 -0.1 63,343 + MPMX19_04677 0.26 -1.1 63,343 + MPMX19_04677 0.26 -0.5 63,343 + MPMX19_04677 0.26 -2.1 63,343 + MPMX19_04677 0.26 -0.5 63,344 - MPMX19_04677 0.26 -1.3 63,344 - MPMX19_04677 0.26 -0.5 63,344 - MPMX19_04677 0.26 -1.3 63,385 + MPMX19_04677 0.29 +0.9 63,386 - MPMX19_04677 0.30 -0.5 63,386 - MPMX19_04677 0.30 +0.2 63,386 - MPMX19_04677 0.30 -1.6
Or see this region's nucleotide sequence