Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04608 and MPMX19_04609 are separated by 17 nucleotides MPMX19_04609 and MPMX19_04610 overlap by 4 nucleotides MPMX19_04610 and MPMX19_04611 are separated by 274 nucleotides MPMX19_04611 and MPMX19_04612 are separated by 73 nucleotides
MPMX19_04608: MPMX19_04608 - 3-ketoacyl-CoA thiolase, at 993,645 to 994,847
_04608
MPMX19_04609: MPMX19_04609 - Putative short-chain type dehydrogenase/reductase, at 994,865 to 995,800
_04609
MPMX19_04610: MPMX19_04610 - putative enoyl-CoA hydratase 1, at 995,797 to 996,279
_04610
MPMX19_04611: MPMX19_04611 - hypothetical protein, at 996,554 to 997,195
_04611
MPMX19_04612: MPMX19_04612 - Crotonobetaine/carnitine--CoA ligase, at 997,269 to 998,903
_04612
Position (kb) 995
996
997 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 994.828 kb on - strand at 995.043 kb on + strand, within MPMX19_04609 at 995.043 kb on + strand, within MPMX19_04609 at 995.043 kb on + strand, within MPMX19_04609 at 995.043 kb on + strand, within MPMX19_04609 at 995.043 kb on + strand, within MPMX19_04609 at 995.043 kb on + strand, within MPMX19_04609 at 995.043 kb on + strand, within MPMX19_04609 at 995.043 kb on + strand, within MPMX19_04609 at 995.043 kb on + strand, within MPMX19_04609 at 995.043 kb on + strand, within MPMX19_04609 at 995.043 kb on + strand, within MPMX19_04609 at 995.043 kb on + strand, within MPMX19_04609 at 995.043 kb on + strand, within MPMX19_04609 at 995.043 kb on + strand, within MPMX19_04609 at 995.044 kb on - strand, within MPMX19_04609 at 995.044 kb on - strand, within MPMX19_04609 at 995.044 kb on - strand, within MPMX19_04609 at 995.280 kb on + strand, within MPMX19_04609 at 995.280 kb on + strand, within MPMX19_04609 at 995.343 kb on + strand, within MPMX19_04609 at 995.344 kb on - strand, within MPMX19_04609 at 995.344 kb on - strand, within MPMX19_04609 at 995.703 kb on + strand, within MPMX19_04609 at 995.894 kb on + strand, within MPMX19_04610 at 995.894 kb on + strand, within MPMX19_04610 at 995.895 kb on - strand, within MPMX19_04610 at 995.895 kb on - strand, within MPMX19_04610 at 996.008 kb on + strand, within MPMX19_04610 at 996.008 kb on + strand, within MPMX19_04610 at 996.009 kb on - strand, within MPMX19_04610 at 996.458 kb on - strand at 996.458 kb on - strand at 996.533 kb on + strand at 996.534 kb on - strand at 996.534 kb on - strand at 996.610 kb on + strand at 996.611 kb on - strand at 996.616 kb on - strand at 996.710 kb on + strand, within MPMX19_04611 at 996.710 kb on + strand, within MPMX19_04611
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 994,828 - -1.9 995,043 + MPMX19_04609 0.19 -1.7 995,043 + MPMX19_04609 0.19 -1.5 995,043 + MPMX19_04609 0.19 +0.2 995,043 + MPMX19_04609 0.19 -0.1 995,043 + MPMX19_04609 0.19 -2.8 995,043 + MPMX19_04609 0.19 +2.2 995,043 + MPMX19_04609 0.19 -1.1 995,043 + MPMX19_04609 0.19 +1.1 995,043 + MPMX19_04609 0.19 -0.4 995,043 + MPMX19_04609 0.19 +0.3 995,043 + MPMX19_04609 0.19 -1.5 995,043 + MPMX19_04609 0.19 +0.2 995,043 + MPMX19_04609 0.19 +0.6 995,043 + MPMX19_04609 0.19 +0.1 995,044 - MPMX19_04609 0.19 -0.2 995,044 - MPMX19_04609 0.19 -0.0 995,044 - MPMX19_04609 0.19 -1.5 995,280 + MPMX19_04609 0.44 -0.8 995,280 + MPMX19_04609 0.44 -0.5 995,343 + MPMX19_04609 0.51 -0.9 995,344 - MPMX19_04609 0.51 +1.1 995,344 - MPMX19_04609 0.51 +0.9 995,703 + MPMX19_04609 0.90 -1.4 995,894 + MPMX19_04610 0.20 +0.5 995,894 + MPMX19_04610 0.20 -1.6 995,895 - MPMX19_04610 0.20 -1.6 995,895 - MPMX19_04610 0.20 -1.7 996,008 + MPMX19_04610 0.44 +0.3 996,008 + MPMX19_04610 0.44 -2.2 996,009 - MPMX19_04610 0.44 -0.0 996,458 - -0.6 996,458 - +1.1 996,533 + -0.7 996,534 - -0.9 996,534 - -1.2 996,610 + -1.5 996,611 - -1.3 996,616 - -0.3 996,710 + MPMX19_04611 0.24 -0.9 996,710 + MPMX19_04611 0.24 -0.5
Or see this region's nucleotide sequence