Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04539 and MPMX19_04540 overlap by 8 nucleotides MPMX19_04540 and MPMX19_04541 overlap by 17 nucleotides MPMX19_04541 and MPMX19_04542 overlap by 4 nucleotides MPMX19_04542 and MPMX19_04543 are separated by 177 nucleotides
MPMX19_04539: MPMX19_04539 - High-affinity branched-chain amino acid transport system permease protein LivH, at 912,567 to 913,466
_04539
MPMX19_04540: MPMX19_04540 - hypothetical protein, at 913,459 to 914,358
_04540
MPMX19_04541: MPMX19_04541 - Lipopolysaccharide export system ATP-binding protein LptB, at 914,342 to 915,175
_04541
MPMX19_04542: MPMX19_04542 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 915,172 to 915,897
_04542
MPMX19_04543: MPMX19_04543 - hypothetical protein, at 916,075 to 916,809
_04543
Position (kb) 914
915
916 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 913.362 kb on + strand, within MPMX19_04539 at 913.362 kb on + strand, within MPMX19_04539 at 913.363 kb on - strand, within MPMX19_04539 at 913.423 kb on - strand at 913.555 kb on - strand, within MPMX19_04540 at 913.714 kb on + strand, within MPMX19_04540 at 913.714 kb on + strand, within MPMX19_04540 at 913.715 kb on - strand, within MPMX19_04540 at 914.056 kb on + strand, within MPMX19_04540 at 914.056 kb on + strand, within MPMX19_04540 at 914.056 kb on + strand, within MPMX19_04540 at 914.056 kb on + strand, within MPMX19_04540 at 914.056 kb on + strand, within MPMX19_04540 at 914.056 kb on + strand, within MPMX19_04540 at 914.056 kb on + strand, within MPMX19_04540 at 914.056 kb on + strand, within MPMX19_04540 at 914.057 kb on - strand, within MPMX19_04540 at 914.057 kb on - strand, within MPMX19_04540 at 914.057 kb on - strand, within MPMX19_04540 at 914.057 kb on - strand, within MPMX19_04540 at 914.057 kb on - strand, within MPMX19_04540 at 914.057 kb on - strand, within MPMX19_04540 at 914.057 kb on - strand, within MPMX19_04540 at 914.057 kb on - strand, within MPMX19_04540 at 914.065 kb on + strand, within MPMX19_04540 at 914.065 kb on + strand, within MPMX19_04540 at 914.065 kb on + strand, within MPMX19_04540 at 914.065 kb on + strand, within MPMX19_04540 at 914.065 kb on + strand, within MPMX19_04540 at 914.066 kb on - strand, within MPMX19_04540 at 914.066 kb on - strand, within MPMX19_04540 at 914.066 kb on - strand, within MPMX19_04540 at 914.194 kb on + strand, within MPMX19_04540 at 914.194 kb on + strand, within MPMX19_04540 at 914.195 kb on - strand, within MPMX19_04540 at 915.077 kb on + strand, within MPMX19_04541 at 915.077 kb on + strand, within MPMX19_04541 at 915.078 kb on - strand, within MPMX19_04541 at 915.205 kb on + strand at 915.205 kb on + strand at 915.205 kb on + strand at 915.206 kb on - strand at 915.206 kb on - strand at 915.418 kb on + strand, within MPMX19_04542 at 915.418 kb on + strand, within MPMX19_04542 at 915.418 kb on + strand, within MPMX19_04542 at 915.418 kb on + strand, within MPMX19_04542 at 915.418 kb on + strand, within MPMX19_04542 at 915.418 kb on + strand, within MPMX19_04542 at 915.418 kb on + strand, within MPMX19_04542 at 915.418 kb on + strand, within MPMX19_04542 at 915.418 kb on + strand, within MPMX19_04542 at 915.418 kb on + strand, within MPMX19_04542 at 915.418 kb on + strand, within MPMX19_04542 at 915.418 kb on + strand, within MPMX19_04542 at 915.418 kb on + strand, within MPMX19_04542 at 915.418 kb on + strand, within MPMX19_04542 at 915.418 kb on + strand, within MPMX19_04542 at 915.419 kb on - strand, within MPMX19_04542 at 915.419 kb on - strand, within MPMX19_04542 at 915.419 kb on - strand, within MPMX19_04542 at 915.419 kb on - strand, within MPMX19_04542 at 915.419 kb on - strand, within MPMX19_04542 at 915.419 kb on - strand, within MPMX19_04542 at 915.419 kb on - strand, within MPMX19_04542 at 915.419 kb on - strand, within MPMX19_04542 at 915.419 kb on - strand, within MPMX19_04542 at 915.419 kb on - strand, within MPMX19_04542 at 915.419 kb on - strand, within MPMX19_04542 at 915.419 kb on - strand, within MPMX19_04542 at 915.419 kb on - strand, within MPMX19_04542 at 915.538 kb on + strand, within MPMX19_04542 at 915.539 kb on - strand, within MPMX19_04542 at 915.793 kb on + strand, within MPMX19_04542 at 915.793 kb on + strand, within MPMX19_04542 at 915.794 kb on - strand, within MPMX19_04542 at 915.794 kb on - strand, within MPMX19_04542 at 915.794 kb on - strand, within MPMX19_04542 at 915.794 kb on - strand, within MPMX19_04542 at 915.794 kb on - strand, within MPMX19_04542 at 915.794 kb on - strand, within MPMX19_04542 at 915.871 kb on + strand at 915.871 kb on + strand at 915.871 kb on + strand at 915.872 kb on - strand at 915.872 kb on - strand at 915.872 kb on - strand at 915.872 kb on - strand at 915.872 kb on - strand at 915.932 kb on + strand at 915.932 kb on + strand at 915.933 kb on - strand at 915.933 kb on - strand at 915.933 kb on - strand at 915.933 kb on - strand at 915.933 kb on - strand at 915.933 kb on - strand at 915.934 kb on + strand at 915.935 kb on - strand at 915.935 kb on - strand at 915.946 kb on + strand at 915.961 kb on - strand at 915.961 kb on - strand at 916.065 kb on + strand at 916.065 kb on + strand at 916.065 kb on + strand at 916.065 kb on + strand at 916.065 kb on + strand at 916.065 kb on + strand at 916.065 kb on + strand at 916.065 kb on + strand at 916.066 kb on - strand at 916.066 kb on - strand at 916.066 kb on - strand at 916.066 kb on - strand at 916.066 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 913,362 + MPMX19_04539 0.88 -0.5 913,362 + MPMX19_04539 0.88 +0.1 913,363 - MPMX19_04539 0.88 -1.2 913,423 - -1.4 913,555 - MPMX19_04540 0.11 -0.2 913,714 + MPMX19_04540 0.28 -0.3 913,714 + MPMX19_04540 0.28 +0.1 913,715 - MPMX19_04540 0.28 -1.4 914,056 + MPMX19_04540 0.66 +1.3 914,056 + MPMX19_04540 0.66 -0.2 914,056 + MPMX19_04540 0.66 -0.1 914,056 + MPMX19_04540 0.66 -0.2 914,056 + MPMX19_04540 0.66 +0.4 914,056 + MPMX19_04540 0.66 -0.8 914,056 + MPMX19_04540 0.66 +0.6 914,056 + MPMX19_04540 0.66 -0.2 914,057 - MPMX19_04540 0.66 +1.3 914,057 - MPMX19_04540 0.66 +0.1 914,057 - MPMX19_04540 0.66 +0.2 914,057 - MPMX19_04540 0.66 +0.4 914,057 - MPMX19_04540 0.66 +0.8 914,057 - MPMX19_04540 0.66 -0.4 914,057 - MPMX19_04540 0.66 -1.9 914,057 - MPMX19_04540 0.66 -0.5 914,065 + MPMX19_04540 0.67 -0.9 914,065 + MPMX19_04540 0.67 -1.1 914,065 + MPMX19_04540 0.67 -1.0 914,065 + MPMX19_04540 0.67 -1.6 914,065 + MPMX19_04540 0.67 -0.4 914,066 - MPMX19_04540 0.67 -0.9 914,066 - MPMX19_04540 0.67 -0.2 914,066 - MPMX19_04540 0.67 -0.9 914,194 + MPMX19_04540 0.82 +1.1 914,194 + MPMX19_04540 0.82 -0.5 914,195 - MPMX19_04540 0.82 -0.2 915,077 + MPMX19_04541 0.88 -0.2 915,077 + MPMX19_04541 0.88 -0.3 915,078 - MPMX19_04541 0.88 -0.5 915,205 + -2.4 915,205 + -2.9 915,205 + +0.9 915,206 - -0.9 915,206 - -0.9 915,418 + MPMX19_04542 0.34 -0.2 915,418 + MPMX19_04542 0.34 -2.5 915,418 + MPMX19_04542 0.34 -0.5 915,418 + MPMX19_04542 0.34 +0.6 915,418 + MPMX19_04542 0.34 +0.5 915,418 + MPMX19_04542 0.34 -0.2 915,418 + MPMX19_04542 0.34 -0.5 915,418 + MPMX19_04542 0.34 +0.6 915,418 + MPMX19_04542 0.34 -0.8 915,418 + MPMX19_04542 0.34 -1.7 915,418 + MPMX19_04542 0.34 +0.2 915,418 + MPMX19_04542 0.34 -1.2 915,418 + MPMX19_04542 0.34 +0.4 915,418 + MPMX19_04542 0.34 -1.2 915,418 + MPMX19_04542 0.34 +2.4 915,419 - MPMX19_04542 0.34 -1.2 915,419 - MPMX19_04542 0.34 -1.2 915,419 - MPMX19_04542 0.34 +1.8 915,419 - MPMX19_04542 0.34 -0.8 915,419 - MPMX19_04542 0.34 -1.2 915,419 - MPMX19_04542 0.34 -0.9 915,419 - MPMX19_04542 0.34 -0.6 915,419 - MPMX19_04542 0.34 -0.1 915,419 - MPMX19_04542 0.34 -0.1 915,419 - MPMX19_04542 0.34 -0.4 915,419 - MPMX19_04542 0.34 -0.2 915,419 - MPMX19_04542 0.34 +0.6 915,419 - MPMX19_04542 0.34 -1.5 915,538 + MPMX19_04542 0.50 +0.2 915,539 - MPMX19_04542 0.51 -1.4 915,793 + MPMX19_04542 0.86 +0.1 915,793 + MPMX19_04542 0.86 -0.1 915,794 - MPMX19_04542 0.86 +1.0 915,794 - MPMX19_04542 0.86 -0.9 915,794 - MPMX19_04542 0.86 +1.4 915,794 - MPMX19_04542 0.86 +0.3 915,794 - MPMX19_04542 0.86 -0.6 915,794 - MPMX19_04542 0.86 -1.7 915,871 + +0.6 915,871 + +0.3 915,871 + -1.2 915,872 - -0.9 915,872 - +0.2 915,872 - +0.3 915,872 - -0.5 915,872 - -0.8 915,932 + -1.5 915,932 + -1.1 915,933 - -0.4 915,933 - +0.6 915,933 - -0.9 915,933 - -0.5 915,933 - +2.6 915,933 - -1.7 915,934 + -0.2 915,935 - +1.0 915,935 - -1.8 915,946 + -0.9 915,961 - -0.5 915,961 - -1.1 916,065 + -0.9 916,065 + +0.5 916,065 + +0.1 916,065 + -0.2 916,065 + +0.5 916,065 + +1.3 916,065 + -0.9 916,065 + -0.5 916,066 - -0.8 916,066 - -0.7 916,066 - +1.6 916,066 - +0.1 916,066 - -0.4
Or see this region's nucleotide sequence